RNF133 (ring finger protein 133) - Rat Genome Database

Name: RNF133
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: RNF133 (ring finger protein 133) Chlorocebus sabaeus

Analyze

Symbol:

RNF133

Name:

ring finger protein 133

RGD ID:

18539495

Description:

INVOLVED IN protein autoubiquitination (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

E3 ubiquitin-protein ligase RNF133

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	91,490,388 - 91,492,206 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	91,490,582 - 91,491,712 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666042	11,999,067 - 12,002,516 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

pleomorphic xanthoastrocytoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

protein autoubiquitination (ISO)

Cellular Component

endoplasmic reticulum membrane (ISO)

membrane (IEA)

References

Genomics

Comparative Map Data

RNF133
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	91,490,388 - 91,492,206 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	91,490,582 - 91,491,712 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666042	11,999,067 - 12,002,516 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

RNF133
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	122,697,735 - 122,699,117 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	122,697,735 - 122,699,117 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	122,337,789 - 122,339,171 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	122,125,002 - 122,126,444 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	7	121,931,716 - 121,933,159	NCBI
Celera	7	117,142,067 - 117,143,509 (-)	NCBI		Celera
Cytogenetic Map	7	q31.32	NCBI
HuRef	7	116,700,656 - 116,702,098 (-)	NCBI		HuRef
CHM1_1	7	122,271,067 - 122,272,509 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	124,013,735 - 124,015,117 (-)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	121,732,467 - 121,733,909 (-)	NCBI

Rnf133
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	23,648,868 - 23,650,304 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	23,648,868 - 23,650,304 (-)	Ensembl		GRCm39 Ensembl
GRCm38	6	23,648,869 - 23,650,305 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	23,648,869 - 23,650,305 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	23,598,869 - 23,600,305 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	23,598,871 - 23,600,307 (-)	NCBI		MGSCv36	mm8
Celera	6	23,671,958 - 23,673,394 (-)	NCBI		Celera
Cytogenetic Map	6	A3.1	NCBI
cM Map	6	11.01	NCBI

Rnf133
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	53,106,097 - 53,109,032 (-)	NCBI		GRCr8
mRatBN7.2	4	52,140,584 - 52,143,357 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	52,140,247 - 52,143,379 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	57,120,650 - 57,122,005 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	53,041,678 - 53,043,033 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	51,470,679 - 51,472,034 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	50,681,843 - 50,686,216 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	4	50,462,281 - 50,465,170 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	50,024,631 - 50,025,986 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	4	47,332,014 - 47,333,369 (-)	NCBI		Celera
Cytogenetic Map	4	q22	NCBI

Rnf133
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955479	4,318,589 - 4,319,704 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955479	4,318,513 - 4,319,974 (-)	NCBI	ChiLan1.0	ChiLan1.0

RNF133
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	159,568,096 - 159,572,711 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	11,578,350 - 11,582,965 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	114,707,995 - 114,709,482 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	127,391,684 - 127,393,125 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

RNF133
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	14	60,418,047 - 60,419,471 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	14	59,838,850 - 59,840,276 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	14	60,457,834 - 60,459,260 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	14	60,547,712 - 60,549,138 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	14	60,175,226 - 60,176,650 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	14	60,553,163 - 60,554,589 (-)	NCBI		UU_Cfam_GSD_1.0

Rnf133
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	49,527,584 - 49,529,262 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936605	2,674,883 - 2,676,331 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RNF133
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	18	24,530,956 - 24,533,936 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	18	26,127,936 - 26,129,580 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Rnf133
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624783	13,307,057 - 13,308,168 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624783	13,306,762 - 13,308,226 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium
Low		10	21
Below cutoff	11	7	26

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007982742	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000019222 ⟹ ENSCSAP00000018642

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	21	91,490,582 - 91,491,712 (-)	Ensembl

RefSeq Acc Id:

XM_007982742 ⟹ XP_007980933

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	21	91,490,388 - 91,492,206 (-)	NCBI
Vero_WHO_p1.0	NW_023666042	11,999,067 - 12,002,516 (+)	NCBI

Sequence:

show sequence

TTGCTGGGAAAAATTTATATAGCATTCTTACATGTGCTTTCAGGCTTTAAAGAGCATACATTGT
ATGAATTTTAGACTTAATTTTTAGTTTAATGTGCTACCTACTATGATTATACGTAGCTCAGTGA
TTATATCCATCTTATAACAACATAGAAATCACCCATAACAGCATTTAAGCCAATAAATTCACAG
TGTGCTCTAAACTCTTATCTAATTGGCTGCTGGATCTTGCATGTCATAATCACATCAAACAACA
GTAAGCAGTATCTAGAGTTAAAAGGAGGGGATTTATTTTTCAATCTAAAGTTTTTCTCCTCTCT
AATAAGACCTCTGAAACTCGTAAGCCATCTTTAAGAATTTCTTACAAAAACATGCTGGAAGATA
GTGGATCTTGTTTGTATACTGAAGTTTTTTTTCTCTTTGTTGTTTTAAATTAATTGTCAACAGA
TGTGGAACTGTTGGGTTGGTTCTTAAGTCACTCGGTGAAGGGAAAGATGCATCTACTCAAGGTT
GGCACTTGTAGAAACAACACTGACTTTTCCTGGCTTATCATGTTCAGTGTTCTTTGGCTTGTTA
GTCAGAACTGTTGCAGAGCAAGTGTTGTTTGGACGGCTTATATGAACATATCATTTCATGTTGG
GAATCATGTGTTGTCAGAGTTGGGAGAGACTGGAGTCTTTGGAAGAAGCTCCACTTTGAAGAGA
GTGGCAGGAGTTATAGTGCCACCGGAGGGAAAAATCCAAAATGCATGTAATCCCAATACCATTT
TCAGCCGATCAAAGTACTCAGAGACCTGGCTTGCACTTATTGAACGGGGAGGTTGTACCTTCAC
ACAGAAAATTAAAGTGGCAGCTGAGAAGGGAGCCAGTGGAGTGATCATCTATAACTTTCCTGGA
ACTGGCAACCAGGTGTTCCCCATGTTTCATCAGGCATTTGAAGATGTCGTTGTGGTTATGATTG
GTAACTTAAAAGGCACGGAAATTTTCCATTTAATTAAGAAGGGAGTTCTCATTACAGCCATGGT
TGAGGTGGGGAGAAAGCACATCATCTGGATGAATCACTATTTGGTCTGTTTTGTGATTGTCACA
ACTGCTACCTTAGCATATTTCATCTTTTATCACATTCATAGACTTTGTTTAGCGAGGATTCAGA
ACCGTAGATGGCAGCGATTAACAACTGATCTTCAGAATGCATTTGGACAACTCCAACTTCGAGT
GGTAAAAGAGGGGGATGAGGAAATAAATCCAAATGGAGATAGCTGTGTAATTTGCTTTGAACAC
TATAAGCCTAATGACATAGTTCGTATTCTGACTTGTAAACATTTTTTCCACAAGAATTGCATTG
ACCCCTGGATTTTATCCCATGGGACATGCCCCATTTGCAAATGTGATATTCTTAAAGTTTTGGG
GATTCAAGTGGATGTTGAAAATGGAACAGAACCTTTGCAAGTTCTAATGTCAAGTGAACTGCGT
GAAAACTTATCACCTAGTGAAGAGGAGACAAATAACGAAGTTTCTCCTGCAGGAACCTCAGATA
AAGTAATCCATGTGGAGGAGAACCCTACTTCTCAGAATAATGACAGCCAGCCTCATTCAGTAGG
GGAAGATGTTCATCCTTCACCTTGATGGCCTGACTTTTGAGGAAGTGTATTAAGCCTGTATGTG
AAATCAGATCCTGATACTGACAAGCAGTTTGTCTGTTTGAAGTGTAGTTTTCTGTGTCATTTTT
TGTTACTTCAATAATTTTCTACATTCTTTGTTAAACCTCAAAGACAGAAAAAAAGTCCTAGCAG
GATTTTTTTGTTTAATTTTGGACCTTT

hide sequence

Protein Sequences


Protein RefSeqs	XP_007980933	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000018642
	ENSCSAP00000018642.1

RefSeq Acc Id:	XP_007980933 ⟸ XM_007982742
- UniProtKB:	A0A0D9SCQ3 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCSAP00000018642 ⟸ ENSCSAT00000019222

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000019132	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000019222.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.40.10	UniProtKB/TrEMBL
	3.50.30.30	UniProtKB/TrEMBL
InterPro	PA_dom_sf	UniProtKB/TrEMBL
	PA_domain	UniProtKB/TrEMBL
	Znf_RING	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
KEGG Report	csab:103226805	UniProtKB/TrEMBL
NCBI Gene	RNF133	ENTREZGENE
PANTHER	E3 UBIQUITIN-PROTEIN LIGASE ATL42	UniProtKB/TrEMBL
	RING-H2 FINGER PROTEIN ATL43	UniProtKB/TrEMBL
Pfam	PF02225	UniProtKB/TrEMBL
	zf-RING_2	UniProtKB/TrEMBL
PROSITE	ZF_RING_2	UniProtKB/TrEMBL
SMART	RING	UniProtKB/TrEMBL
Superfamily-SCOP	PA domain	UniProtKB/TrEMBL
	RING/U-box	UniProtKB/TrEMBL
UniProt	A0A0D9SCQ3	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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