RNF133 (ring finger protein 133) - Rat Genome Database

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Gene: RNF133 (ring finger protein 133) Sus scrofa
Analyze
Symbol: RNF133
Name: ring finger protein 133
RGD ID: 14095929
Description: INVOLVED IN protein autoubiquitination (ortholog); ASSOCIATED WITH genetic disease (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: E3 ubiquitin-protein ligase RNF133
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11824,530,956 - 24,533,936 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21826,127,936 - 26,129,580 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

Genomics

Comparative Map Data
RNF133
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11824,530,956 - 24,533,936 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21826,127,936 - 26,129,580 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RNF133
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387122,697,735 - 122,699,117 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7122,697,735 - 122,699,117 (-)EnsemblGRCh38hg38GRCh38
GRCh377122,337,789 - 122,339,171 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367122,125,002 - 122,126,444 (-)NCBINCBI36Build 36hg18NCBI36
Build 347121,931,716 - 121,933,159NCBI
Celera7117,142,067 - 117,143,509 (-)NCBICelera
Cytogenetic Map7q31.32NCBI
HuRef7116,700,656 - 116,702,098 (-)NCBIHuRef
CHM1_17122,271,067 - 122,272,509 (-)NCBICHM1_1
T2T-CHM13v2.07124,013,735 - 124,015,117 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27121,732,467 - 121,733,909 (-)NCBI
Rnf133
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39623,648,868 - 23,650,304 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl623,648,868 - 23,650,304 (-)EnsemblGRCm39 Ensembl
GRCm38623,648,869 - 23,650,305 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl623,648,869 - 23,650,305 (-)EnsemblGRCm38mm10GRCm38
MGSCv37623,598,869 - 23,600,305 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36623,598,871 - 23,600,307 (-)NCBIMGSCv36mm8
Celera623,671,958 - 23,673,394 (-)NCBICelera
Cytogenetic Map6A3.1NCBI
cM Map611.01NCBI
Rnf133
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8453,106,097 - 53,109,032 (-)NCBIGRCr8
mRatBN7.2452,140,584 - 52,143,357 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl452,140,247 - 52,143,379 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx457,120,650 - 57,122,005 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0453,041,678 - 53,043,033 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0451,470,679 - 51,472,034 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0450,681,843 - 50,686,216 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0450,462,281 - 50,465,170 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4450,024,631 - 50,025,986 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera447,332,014 - 47,333,369 (-)NCBICelera
Cytogenetic Map4q22NCBI
Rnf133
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554794,318,589 - 4,319,704 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554794,318,513 - 4,319,974 (-)NCBIChiLan1.0ChiLan1.0
RNF133
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26159,568,096 - 159,572,711 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1711,578,350 - 11,582,965 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07114,707,995 - 114,709,482 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17127,391,684 - 127,393,125 (-)NCBIpanpan1.1PanPan1.1panPan2
RNF133
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11460,418,047 - 60,419,471 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1459,838,850 - 59,840,276 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01460,457,834 - 60,459,260 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11460,547,712 - 60,549,138 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01460,175,226 - 60,176,650 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01460,553,163 - 60,554,589 (-)NCBIUU_Cfam_GSD_1.0
Rnf133
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511849,527,584 - 49,529,262 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366052,674,883 - 2,676,331 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF133
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12191,490,388 - 91,492,206 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2191,490,582 - 91,491,712 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604211,999,067 - 12,002,516 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnf133
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478313,307,057 - 13,308,168 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478313,306,762 - 13,308,226 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RNF133
74 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005673216   ⟹   XP_005673273
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11824,530,956 - 24,533,936 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005673273 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005673273   ⟸   XM_005673216
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene RNF133 ENTREZGENE