NEUROD1 (neuronal differentiation 1) - Rat Genome Database

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Pathways
Gene: NEUROD1 (neuronal differentiation 1) Chlorocebus sabaeus
Analyze
Symbol: NEUROD1
Name: neuronal differentiation 1
RGD ID: 18532426
Description: ENCODES a protein that exhibits double-stranded DNA binding (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); camera-type eye development (ortholog); cell fate commitment (ortholog); ASSOCIATED WITH diabetes mellitus (ortholog); Experimental Diabetes Mellitus (ortholog); fundus dystrophy (ortholog); FOUND IN cytoplasm (inferred); nucleus (inferred); RNA polymerase II transcription regulator complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: neurogenic differentiation factor 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap11068,943,741 - 68,947,964 (-)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_023666040132,367,194 - 132,371,760 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.11067,203,714 - 67,208,644 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1067,205,141 - 67,206,211 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
NEUROD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap11068,943,741 - 68,947,964 (-)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_023666040132,367,194 - 132,371,760 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.11067,203,714 - 67,208,644 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1067,205,141 - 67,206,211 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
NEUROD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382181,668,295 - 181,680,517 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2181,668,295 - 181,680,827 (-)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh372182,533,022 - 182,545,244 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362182,249,439 - 182,253,626 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342182,366,700 - 182,370,760NCBI
Celera2176,137,248 - 176,141,434 (-)NCBICelera
Cytogenetic Map2q31.3NCBI
HuRef2174,397,426 - 174,401,985 (-)NCBIHuRef
CHM1_12182,546,618 - 182,551,246 (-)NCBICHM1_1
T2T-CHM13v2.02182,158,398 - 182,170,625 (-)NCBIT2T-CHM13v2.0
Neurod1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39279,282,981 - 79,286,980 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl279,282,865 - 79,287,294 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38279,452,637 - 79,456,636 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl279,452,521 - 79,456,751 (-)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv37279,292,798 - 79,296,793 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36279,253,480 - 79,257,475 (-)NCBIMGSCv36mm8
Celera281,111,974 - 81,115,969 (-)NCBICelera
Cytogenetic Map2C3NCBI
cM Map247.58NCBI
Neurod1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8384,766,483 - 84,770,454 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl384,764,725 - 84,770,810 (-)EnsemblGRCr8
mRatBN7.2364,359,554 - 64,363,526 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl364,359,395 - 64,363,649 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx367,711,247 - 67,715,219 (-)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0376,294,848 - 76,298,820 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0374,041,670 - 74,045,642 (-)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd382,566,792 - 82,570,764 (-)NCBI
Lyon_Normotensive389,489,227 - 89,493,199 (-)NCBI
Lyon_Hypertensive381,411,602 - 81,415,574 (-)NCBI
F344_StmMcwi362,700,715 - 62,704,687 (-)NCBI
Rnor_6.0366,414,314 - 66,417,617 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl366,414,308 - 66,417,741 (-)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.0372,974,876 - 72,978,179 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4362,224,633 - 62,227,936 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera363,819,711 - 63,823,202 (-)NCBICelera
RGSC_v3.1362,121,017 - 62,124,302 (-)NCBI
Cytogenetic Map3q24NCBI
Neurod1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540315,595,888 - 15,600,040 (+)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_00495540315,595,888 - 15,600,040 (+)NCBIChiLan1.0ChiLan1.0
NEUROD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21384,325,674 - 84,329,958 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B84,339,191 - 84,344,931 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B68,939,341 - 68,943,516 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B186,749,155 - 186,753,541 (-)NCBIPanPan1.1PanPan1.1panPan2
NEUROD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13624,853,591 - 24,857,886 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3624,876,367 - 24,880,645 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03625,015,921 - 25,020,202 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3625,017,362 - 25,018,352 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13625,105,431 - 25,109,707 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03625,071,760 - 25,074,709 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03625,205,991 - 25,210,288 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Neurod1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap17148,842,285 - 148,846,408 (-)NCBImIctTri1.hap1
HiC_Itri_2NW_024405303141,867,918 - 141,872,050 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650910,423,126 - 10,424,196 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493650910,421,821 - 10,425,927 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NEUROD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1587,175,765 - 87,179,959 (-)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.11587,175,629 - 87,179,953 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21596,661,749 - 96,664,352 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Neurod1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248443,493,819 - 3,497,814 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
HetGla_female_1.0 EnsemblNW_0046248443,494,677 - 3,497,759 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
Naked mole-rat maternal Ensembl3103,190,702 - 103,202,919 (-)Ensembl
Neurod1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1556,676,479 - 56,680,550 (-)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1

Variants

.
Variants in NEUROD1
48 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
40 20 17 17 17 40 20

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007965536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JBLKOC010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000018742   ⟹   ENSCSAP00000018178
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1067,205,141 - 67,206,211 (-)Ensembl
RefSeq Acc Id: XM_007965536   ⟹   XP_007963727
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
mChlSab1.0.hap11068,943,741 - 68,947,964 (-)NCBI
Vero_WHO_p1.0NW_023666040132,367,194 - 132,371,760 (+)NCBI
ChlSab1.11067,203,714 - 67,208,644 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007963727 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000018178
  ENSCSAP00000018178.1
RefSeq Acc Id: XP_007963727   ⟸   XM_007965536
- UniProtKB: A0A0D9SBD9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000018178   ⟸   ENSCSAT00000018742


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000018652 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000018742.1 UniProtKB/TrEMBL
Gene3D-CATH 4.10.280.10 UniProtKB/TrEMBL
InterPro bHLH_dom UniProtKB/TrEMBL
  bHLH_transcription_factors UniProtKB/TrEMBL
  HLH_DNA-bd_sf UniProtKB/TrEMBL
  Neurogenic_DUF UniProtKB/TrEMBL
  TF_bHLH_NeuroD UniProtKB/TrEMBL
KEGG Report csab:103217452 UniProtKB/TrEMBL
NCBI Gene NEUROD1 ENTREZGENE
PANTHER BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED UniProtKB/TrEMBL
  PTHR19290:SF88 UniProtKB/TrEMBL
Pfam HLH UniProtKB/TrEMBL
  Neuro_bHLH UniProtKB/TrEMBL
PIRSF bHLH_NeuroD UniProtKB/TrEMBL
SMART HLH UniProtKB/TrEMBL
Superfamily-SCOP SSF47459 UniProtKB/TrEMBL
UniProt A0A0D9SBD9 ENTREZGENE, UniProtKB/TrEMBL