ARSA (arylsulfatase A) - Rat Genome Database

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Gene: ARSA (arylsulfatase A) Chlorocebus sabaeus
Analyze
Symbol: ARSA
Name: arylsulfatase A
RGD ID: 18530646
Description: ENCODES a protein that exhibits arylsulfatase activity (ortholog); calcium ion binding (ortholog); sulfuric ester hydrolase activity (ortholog); INVOLVED IN autophagy (ortholog); response to estrogen (ortholog); response to ethanol (ortholog); PARTICIPATES IN Fabry disease pathway; Gaucher's disease pathway; Krabbe disease pathway; ASSOCIATED WITH amenorrhea (ortholog); autism spectrum disorder (ortholog); Autosomal Sideroblastic Anemia (ortholog); FOUND IN acrosomal vesicle (ortholog); endosome (ortholog); extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11933,102,803 - 33,105,958 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1933,100,117 - 33,105,926 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366654618,495 - 21,647 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
ARSAGreen Monkeyhypothyroidism  ISOArsa (Rattus norvegicus)9068941 RGDPMID:7901316 and REF_RGD_ID:1599223
1 to 20 of 22 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
ARSAGreen Monkeyamenorrhea  ISOARSA (Homo sapiens)8554872ClinVar Annotator: match by term: Primary amenorrheaClinVarPMID:21681106
ARSAGreen Monkeyautism spectrum disorder  ISOARSA (Homo sapiens)8554872ClinVar Annotator: match by term: Autism spectrum disorderClinVarPMID:11391650 more ...
ARSAGreen MonkeyAutosomal Sideroblastic Anemia  ISOARSA (Homo sapiens)8554872ClinVar Annotator: match by term: Autosomal recessive sideroblastic anemiaClinVarPMID:25741868
ARSAGreen Monkeychromosome 22q13 duplication syndrome  ISOARSA (Homo sapiens)8554872ClinVar Annotator: match by term: Chromosome 22q13 duplication syndromeClinVarPMID:31690835
ARSAGreen Monkeycitrullinemia  ISOARSA (Homo sapiens)8554872ClinVar Annotator: match by term: CitrullinemiaClinVarPMID:25741868 more ...
ARSAGreen Monkeycongenital disorder of glycosylation Ig  ISOARSA (Homo sapiens)8554872ClinVar Annotator: match by term: ALG12-congenital disorder of glycosylationClinVarPMID:15639192 more ...
ARSAGreen Monkeyfrontotemporal dementia  ISOARSA (Homo sapiens)8554872ClinVar Annotator: match by term: Frontotemporal dementiaClinVarPMID:10477432 more ...
ARSAGreen Monkeygenetic disease  ISOARSA (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:10220151 more ...
ARSAGreen MonkeyInfantile-Onset Multisystem Neurologic, Endocrine, and Pancreatic Disease 2  ISOARSA (Homo sapiens)8554872ClinVar Annotator: match by term: Neurologic more ...ClinVarPMID:15326627 more ...
ARSAGreen Monkeyintellectual disability  ISOARSA (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVarPMID:10477432 more ...
ARSAGreen Monkeyleukodystrophy  ISOARSA (Homo sapiens)8554872ClinVar Annotator: match by term: LeukodystrophyClinVarPMID:10381328 more ...
ARSAGreen Monkeymetachromatic leukodystrophy  ISOARSA (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10220151 more ...
ARSAGreen Monkeymetachromatic leukodystrophy  ISOARSA (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10220151 more ...
ARSAGreen Monkeymetachromatic leukodystrophy  ISOARSA (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10220151 more ...
ARSAGreen Monkeymetachromatic leukodystrophy  ISOARSA (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10220151 more ...
ARSAGreen Monkeymetachromatic leukodystrophy  ISOARSA (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10220151 more ...
ARSAGreen Monkeymetachromatic leukodystrophy  ISOARSA (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10220151 more ...
ARSAGreen MonkeyNervous System Malformations  ISOARSA (Homo sapiens)8554872ClinVar Annotator: match by term: Abnormality of the nervous systemClinVarPMID:15326627 more ...
ARSAGreen MonkeyNeurodevelopmental Disorders  ISOARSA (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:10477432 more ...
ARSAGreen MonkeyPhelan-McDermid syndrome  ISOARSA (Homo sapiens)8554872ClinVar Annotator: match by term: Phelan-McDermid syndromeClinVar 
1 to 20 of 22 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
ARSAGreen Monkeymetachromatic leukodystrophy  ISOARSA (Homo sapiens)7240710 OMIM 


Biological Process

  

Cellular Component

  

Molecular Function

  

Imported Annotations - SMPDB

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
ARSAGreen MonkeyFabry disease pathway  ISOARSA (Homo sapiens)9068941 SMPDBSMP:00525
ARSAGreen MonkeyGaucher's disease pathway  ISOARSA (Homo sapiens)9068941 SMPDBSMP:00349
ARSAGreen MonkeyKrabbe disease pathway  ISOARSA (Homo sapiens)9068941 SMPDBSMP:00348
ARSAGreen Monkeymetachromatic leukodystrophy pathway  ISOARSA (Homo sapiens)9068941 SMPDBSMP:00347
ARSAGreen Monkeysphingolipid metabolic pathway  ISOARSA (Homo sapiens)9068941 SMPDBSMP:00034
PMID:30032202  



ARSA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11933,102,803 - 33,105,958 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1933,100,117 - 33,105,926 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366654618,495 - 21,647 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ARSA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382250,622,754 - 50,628,152 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2250,622,754 - 50,628,173 (-)EnsemblGRCh38hg38GRCh38
GRCh372251,061,182 - 51,066,580 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362249,410,315 - 49,413,473 (-)NCBINCBI36Build 36hg18NCBI36
Build 342249,353,599 - 49,356,720NCBI
Celera2234,939,475 - 34,942,633 (-)NCBICelera
Cytogenetic Map22q13.33ENTREZGENE
HuRef2233,951,640 - 33,957,003 (-)NCBIHuRef
CHM1_12251,019,964 - 51,025,351 (-)NCBICHM1_1
T2T-CHM13v2.02251,133,297 - 51,138,663 (-)NCBIT2T-CHM13v2.0
Arsa
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391589,356,679 - 89,361,627 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1589,356,679 - 89,361,628 (-)EnsemblGRCm39 Ensembl
GRCm381589,472,476 - 89,477,424 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1589,472,476 - 89,477,425 (-)EnsemblGRCm38mm10GRCm38
MGSCv371589,302,907 - 89,307,855 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361589,300,261 - 89,316,421 (-)NCBIMGSCv36mm8
Celera1591,601,657 - 91,606,605 (-)NCBICelera
Cytogenetic Map15E3NCBI
cM Map1544.94NCBI
Arsa
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87122,422,971 - 122,426,971 (-)NCBIGRCr8
mRatBN7.27120,542,788 - 120,547,577 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7120,543,362 - 120,548,783 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7122,296,387 - 122,298,913 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07124,522,533 - 124,525,059 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07124,484,772 - 124,487,298 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07130,446,644 - 130,452,632 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7130,446,668 - 130,451,283 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07130,131,465 - 130,137,453 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47127,790,208 - 127,792,734 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17127,824,434 - 127,826,966 (-)NCBI
Celera7117,017,039 - 117,019,565 (-)NCBICelera
Cytogenetic Map7q34NCBI
Arsa
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541333,623,525 - 33,629,771 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541333,624,460 - 33,629,491 (-)NCBIChiLan1.0ChiLan1.0
ARSA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22360,542,613 - 60,545,784 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12263,231,615 - 63,236,318 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02230,868,812 - 30,871,970 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12249,978,955 - 49,982,108 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2249,978,955 - 49,982,099 (-)Ensemblpanpan1.1panPan2
ARSA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11016,691,927 - 16,694,346 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1016,691,758 - 16,695,398 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1016,669,563 - 16,671,982 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01017,418,229 - 17,420,648 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1017,417,717 - 17,423,153 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11017,142,642 - 17,145,061 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01017,465,701 - 17,468,120 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01017,597,813 - 17,600,232 (+)NCBIUU_Cfam_GSD_1.0
Arsa
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945187,281 - 205,493 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936629187,275 - 191,008 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936629187,281 - 205,493 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARSA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl5107,149 - 111,518 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.15107,103 - 110,330 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Pig Cytomap5p15-p11NCBI
Arsa
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624752149,187 - 153,746 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624752149,248 - 153,625 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in ARSA
67 total Variants



ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20


RefSeq Transcripts XM_007976280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007976281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000002813   ⟹   ENSCSAP00000001108
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1933,100,117 - 33,105,926 (-)Ensembl
RefSeq Acc Id: XM_007976280   ⟹   XP_007974471
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11933,102,803 - 33,105,958 (-)NCBI
Vero_WHO_p1.0NW_02366654618,495 - 21,647 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007976281   ⟹   XP_007974472
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11933,102,803 - 33,105,958 (-)NCBI
Vero_WHO_p1.0NW_02366654618,495 - 21,647 (+)NCBI
Sequence:
Protein RefSeqs XP_007974471 (Get FASTA)   NCBI Sequence Viewer  
  XP_007974472 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000001108
  ENSCSAP00000001108.1
RefSeq Acc Id: XP_007974471   ⟸   XM_007976280
- UniProtKB: A0A0D9QXL9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007974472   ⟸   XM_007976281
- UniProtKB: A0A0D9QXL9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000001108   ⟸   ENSCSAT00000002813



1 to 18 of 18 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCSAG00000004780 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000002813.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1120.10 UniProtKB/TrEMBL
  3.40.720.10 UniProtKB/TrEMBL
InterPro Alkaline_phosphatase_core_sf UniProtKB/TrEMBL
  Sulfatase UniProtKB/TrEMBL
  Sulfatase_CS UniProtKB/TrEMBL
  Sulfatase_N UniProtKB/TrEMBL
KEGG Report csab:103223578 UniProtKB/TrEMBL
NCBI Gene ARSA ENTREZGENE
PANTHER ARYLSULFATASE A UniProtKB/TrEMBL
  ARYLSULFATASE FAMILY MEMBER UniProtKB/TrEMBL
Pfam Sulfatase UniProtKB/TrEMBL
  Sulfatase_C UniProtKB/TrEMBL
PROSITE SULFATASE_1 UniProtKB/TrEMBL
  SULFATASE_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF53649 UniProtKB/TrEMBL
UniProt A0A0D9QXL9 ENTREZGENE, UniProtKB/TrEMBL
1 to 18 of 18 rows