RPL13A (ribosomal protein L13a) - Rat Genome Database

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Gene: RPL13A (ribosomal protein L13a) Chlorocebus sabaeus
Analyze
Symbol: RPL13A
Name: ribosomal protein L13a
RGD ID: 18527799
Description: ENCODES a protein that exhibits mRNA binding (inferred); structural constituent of ribosome (inferred); INVOLVED IN cellular response to cAMP (ortholog); cellular response to gamma radiation (ortholog); cellular response to type II interferon (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH Animal Disease Models (ortholog); developmental and epileptic encephalopathy 12 (ortholog); lung adenocarcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytosolic large ribosomal subunit (ortholog); cytosolic ribosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L13a
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1642,666,186 - 42,671,018 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607322,595,799 - 22,600,058 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RPL13A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1642,666,186 - 42,671,018 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607322,595,799 - 22,600,058 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
RPL13A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381949,487,608 - 49,492,308 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1949,487,510 - 49,493,057 (+)EnsemblGRCh38hg38GRCh38
GRCh371949,990,865 - 49,995,565 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361954,682,677 - 54,687,377 (+)NCBINCBI36Build 36hg18NCBI36
Build 341954,682,676 - 54,687,374NCBI
Celera1946,860,188 - 46,864,887 (+)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1946,368,350 - 46,373,103 (+)NCBIHuRef
CHM1_11949,992,085 - 49,997,349 (+)NCBICHM1_1
T2T-CHM13v2.01952,487,574 - 52,492,273 (+)NCBIT2T-CHM13v2.0
Rpl13a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,774,987 - 44,778,169 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl744,774,982 - 44,778,185 (-)EnsemblGRCm39 Ensembl
GRCm38745,125,563 - 45,128,745 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl745,125,558 - 45,128,761 (-)EnsemblGRCm38mm10GRCm38
MGSCv37752,381,146 - 52,384,105 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36744,993,818 - 44,996,777 (-)NCBIMGSCv36mm8
Celera740,578,868 - 40,581,827 (-)NCBICelera
Cytogenetic Map7B3NCBI
cM Map729.14NCBI
Rpl13a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81104,746,223 - 104,748,975 (-)NCBIGRCr8
mRatBN7.2195,609,374 - 95,612,557 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl195,609,370 - 95,620,463 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1100,995,152 - 100,997,842 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01109,467,819 - 109,470,509 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01102,758,226 - 102,760,916 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01101,120,325 - 101,123,401 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1101,120,325 - 101,123,402 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01102,186,220 - 102,188,910 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4195,600,814 - 95,603,504 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1195,678,924 - 95,681,616 (-)NCBI
Celera189,868,177 - 89,870,867 (-)NCBICelera
Cytogenetic Map1q22NCBI
Rpl13a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555591,358,486 - 1,362,663 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555591,358,479 - 1,362,663 (-)NCBIChiLan1.0ChiLan1.0
RPL13A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22055,602,155 - 55,607,523 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11957,523,611 - 57,527,867 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01946,485,729 - 46,504,928 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11955,423,867 - 55,428,598 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1955,423,866 - 55,428,598 (+)Ensemblpanpan1.1panPan2
RPL13A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11107,010,190 - 107,014,267 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1107,010,190 - 107,014,267 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1106,593,464 - 106,597,541 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01107,530,251 - 107,534,330 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1107,530,251 - 107,534,330 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11107,203,301 - 107,207,380 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01106,845,354 - 106,849,436 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01107,686,472 - 107,690,551 (-)NCBIUU_Cfam_GSD_1.0
Rpl13a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934921,734,487 - 21,738,006 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366643,352,514 - 3,356,895 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366643,352,535 - 3,356,196 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL13A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl654,551,533 - 54,561,489 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1654,551,772 - 54,568,752 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2650,280,484 - 50,297,722 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Rpl13a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248324,727,899 - 4,732,367 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248324,728,298 - 4,732,397 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RPL13A
134 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


RefSeq Acc Id: XM_007997565   ⟹   XP_007995756
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1642,666,186 - 42,671,018 (+)NCBI
Vero_WHO_p1.0NW_02366607322,595,799 - 22,600,058 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007997566   ⟹   XP_007995757
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1642,666,739 - 42,671,018 (+)NCBI
Vero_WHO_p1.0NW_02366607322,596,247 - 22,600,058 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007995756 (Get FASTA)   NCBI Sequence Viewer  
  XP_007995757 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000015506
  ENSCSAP00000015506.1
  ENSCSAP00000018566.1
RefSeq Acc Id: XP_007995756   ⟸   XM_007997565
- Peptide Label: isoform X1
- UniProtKB: A0A0D9SCH7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007995757   ⟸   XM_007997566
- Peptide Label: isoform X2
- UniProtKB: A0A0D9S3R7 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000002537 ENTREZGENE, UniProtKB/TrEMBL
  ENSCSAG00000019054 UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000000555.1 UniProtKB/TrEMBL
  ENSCSAT00000019144.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.1180.10 UniProtKB/TrEMBL
  6.10.250.3250 UniProtKB/TrEMBL
InterPro Ribosomal_L13 UniProtKB/TrEMBL
  Ribosomal_L13_CS UniProtKB/TrEMBL
  Ribosomal_L13_euk/arc UniProtKB/TrEMBL
  Ribosomal_L13_sf UniProtKB/TrEMBL
NCBI Gene RPL13A ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L13A UniProtKB/TrEMBL
  PTHR11545 UniProtKB/TrEMBL
Pfam Ribosomal_L13 UniProtKB/TrEMBL
PROSITE RIBOSOMAL_L13 UniProtKB/TrEMBL
Superfamily-SCOP SSF52161 UniProtKB/TrEMBL
UniProt A0A0D9S3R7 ENTREZGENE, UniProtKB/TrEMBL
  A0A0D9SCH7 ENTREZGENE, UniProtKB/TrEMBL