ZFPM2 (zinc finger protein, FOG family member 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: ZFPM2 (zinc finger protein, FOG family member 2) Chlorocebus sabaeus
Analyze
Symbol: ZFPM2
Name: zinc finger protein, FOG family member 2
RGD ID: 18522888
Description: ENCODES a protein that exhibits DNA binding (inferred); metal ion binding (inferred); RNA polymerase II-specific DNA-binding transcription factor binding (inferred); INVOLVED IN cardiac muscle tissue development (ortholog); embryonic organ development (ortholog); heart development (ortholog); ASSOCIATED WITH 46,XY sex reversal 3 (ortholog); 46,XY sex reversal 9 (ortholog); atrial heart septal defect (ortholog); FOUND IN cytoplasm (inferred); male germ cell nucleus (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger protein ZFPM2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18100,138,867 - 100,620,355 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603939,958,226 - 40,438,731 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ZFPM2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18100,138,867 - 100,620,355 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603939,958,226 - 40,438,731 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ZFPM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388105,318,438 - 105,804,539 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8104,590,733 - 105,804,539 (+)EnsemblGRCh38hg38GRCh38
GRCh378106,330,666 - 106,816,767 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368106,400,323 - 106,885,943 (+)NCBINCBI36Build 36hg18NCBI36
Build 348106,400,322 - 106,885,941NCBI
Celera8102,518,281 - 103,003,726 (+)NCBICelera
Cytogenetic Map8q23.1NCBI
HuRef8101,532,803 - 102,138,045 (+)NCBIHuRef
CHM1_18106,371,762 - 106,857,264 (+)NCBICHM1_1
T2T-CHM13v2.08106,445,857 - 106,932,108 (+)NCBIT2T-CHM13v2.0
Zfpm2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391540,518,438 - 40,967,988 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1540,518,431 - 40,967,988 (+)EnsemblGRCm39 Ensembl
GRCm381540,655,042 - 41,104,592 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1540,655,035 - 41,104,592 (+)EnsemblGRCm38mm10GRCm38
MGSCv371540,486,588 - 40,936,138 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361540,485,116 - 40,934,666 (+)NCBIMGSCv36mm8
Celera1541,140,194 - 41,582,164 (+)NCBICelera
Cytogenetic Map15B3.1NCBI
cM Map1515.74NCBI
Zfpm2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8773,563,732 - 74,001,041 (+)NCBIGRCr8
mRatBN7.2771,678,658 - 72,116,209 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl771,678,880 - 72,116,205 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx773,563,335 - 73,995,149 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0775,765,841 - 76,197,677 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0775,633,940 - 76,065,769 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0779,471,277 - 79,964,405 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl779,638,046 - 79,964,405 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0779,491,886 - 79,976,680 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4776,210,472 - 76,654,443 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1776,324,843 - 76,675,169 (+)NCBI
Celera768,728,223 - 69,158,299 (+)NCBICelera
Cytogenetic Map7q31NCBI
Zfpm2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541728,920,210 - 29,269,271 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541728,931,428 - 29,268,778 (+)NCBIChiLan1.0ChiLan1.0
ZFPM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27122,596,111 - 123,154,098 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1898,118,921 - 98,676,812 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08101,872,850 - 102,430,622 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18104,193,343 - 104,577,698 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8104,023,062 - 104,576,688 (+)Ensemblpanpan1.1panPan2
ZFPM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1136,435,368 - 6,796,903 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl136,336,794 - 6,796,322 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha136,442,921 - 6,803,153 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0136,588,050 - 7,045,717 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl136,587,518 - 7,044,757 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1136,451,443 - 6,811,875 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0136,571,226 - 6,931,950 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0136,646,836 - 7,007,257 (+)NCBIUU_Cfam_GSD_1.0
Zfpm2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530331,006,795 - 31,431,557 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647038,432,897 - 38,857,662 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647038,432,894 - 38,857,656 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZFPM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl431,606,773 - 32,094,287 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1431,607,968 - 31,996,226 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2434,232,973 - 34,242,599 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.2434,441,657 - 34,641,574 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Zfpm2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476321,388,244 - 21,707,953 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476321,388,060 - 21,708,969 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_008001331   ⟹   XP_007999522
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.18100,138,867 - 100,620,355 (+)NCBI
Vero_WHO_p1.0NW_02366603939,958,226 - 40,438,731 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008001332   ⟹   XP_007999523
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.18100,138,867 - 100,620,355 (+)NCBI
Vero_WHO_p1.0NW_02366603939,958,226 - 40,438,731 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007999522 (Get FASTA)   NCBI Sequence Viewer  
  XP_007999523 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000008016.1
RefSeq Acc Id: XP_007999522   ⟸   XM_008001331
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RHC7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007999523   ⟸   XM_008001332
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RHC7 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000011798 UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000009892.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro FOG UniProtKB/TrEMBL
  ZF_CCHC_FOG UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene ZFPM2 ENTREZGENE
PANTHER FRIEND OF GATA2-RELATED UniProtKB/TrEMBL
  ZINC FINGER PROTEIN ZFPM2 UniProtKB/TrEMBL
Pfam zf-met UniProtKB/TrEMBL
PROSITE ZF_CCHC_FOG UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP beta-beta-alpha zinc fingers UniProtKB/TrEMBL
UniProt A0A0D9RHC7 ENTREZGENE, UniProtKB/TrEMBL