CTNND2 (catenin delta 2) - Rat Genome Database

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Gene: CTNND2 (catenin delta 2) Chlorocebus sabaeus
Analyze
Symbol: CTNND2
Name: catenin delta 2
RGD ID: 18438476
Description: ENCODES a protein that exhibits structural constituent of postsynaptic density (ortholog); INVOLVED IN learning (ortholog); morphogenesis of a branching structure (ortholog); neuron projection retraction (ortholog); ASSOCIATED WITH anxiety disorder (ortholog); developmental and epileptic encephalopathy 11 (ortholog); genetic disease (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynaptic density (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: catenin delta-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1410,499,822 - 11,426,432 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl410,500,761 - 10,762,677 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606417,117,009 - 18,045,253 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CTNND2Green Monkeyanxiety disorder susceptibilityISOCTNND2 (Homo sapiens)9068941DNA:polymorphism:multiple (human)RGDPMID:24256404 and REF_RGD_ID:40902831
CTNND2Green Monkeymajor depressive disorder susceptibilityISOCTNND2 (Homo sapiens)9068941DNA:polymorphism:multiple (human)RGDPMID:24256404 and REF_RGD_ID:40902831
CTNND2Green Monkeyschizophrenia susceptibilityISOCTNND2 (Homo sapiens)9068941DNA:polymorphism:multiple (human)RGDPMID:24256404 and REF_RGD_ID:40902831
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CTNND2Green Monkeydevelopmental and epileptic encephalopathy 11  ISOCTNND2 (Homo sapiens)8554872ClinVar Annotator: match by term: Complex neurodevelopmental disorderClinVar 
CTNND2Green Monkeygenetic disease  ISOCTNND2 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:12835311 more ...
CTNND2Green MonkeyNeurodevelopmental Disorders  ISOCTNND2 (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868
CTNND2Green Monkeyschizophrenia  ISOCTNND2 (Homo sapiens)8554872ClinVar Annotator: match by term: SchizophreniaClinVarPMID:21681106 and PMID:30208311
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CTNND2Green Monkeyglioblastoma  ISOCTNND2 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:23917401
CTNND2Green MonkeyNeoplastic Cell Transformation  ISOCTNND2 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:23917401


Biological Process
1 to 12 of 12 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CTNND2Green Monkeycell adhesion involved_inIEAUniProtKB-KW:KW-0130150520179 UniProtGO_REF:0000043
CTNND2Green Monkeycell-cell adhesion involved_inIEAInterPro:IPR028435150520179 InterProGO_REF:0000002
CTNND2Green Monkeydendritic spine morphogenesis involved_inIEAUniProtKB:Q9UQB3 and ensembl:ENSP00000307134150520179 EnsemblGO_REF:0000107
CTNND2Green Monkeydendritic spine morphogenesis involved_inIEAPANTHER:PTN000042920150520179 TreeGrafterGO_REF:0000118
CTNND2Green Monkeylearning acts_upstream_of_or_withinISOMGI:30566069068941 PMID:15380068MGIPMID:15380068
CTNND2Green Monkeymorphogenesis of a branching structure acts_upstream_of_or_withinISOCtnnd2 (Mus musculus)9068941 PMID:17097608MGIPMID:17097608
CTNND2Green Monkeyneuron projection retraction  ISOCtnnd2 (Rattus norvegicus)9068941 RGDPMID:32554807 and REF_RGD_ID:407532699
CTNND2Green Monkeypositive regulation of axon extension  ISOCtnnd2 (Rattus norvegicus)9068941 RGDPMID:32554807 and REF_RGD_ID:407532699
CTNND2Green Monkeyregulation of canonical Wnt signaling pathway involved_inIEAUniProtKB:Q9UQB3 and ensembl:ENSP00000307134150520179 EnsemblGO_REF:0000107
CTNND2Green Monkeyregulation of postsynaptic membrane neurotransmitter receptor levels involved_inISOCtnnd2 (Rattus norvegicus)9068941PMID:17687028SynGOPMID:17687028 and REF_RGD_ID:155230756
CTNND2Green Monkeyregulation of synaptic plasticity acts_upstream_of_or_withinISOMGI:30566069068941 PMID:15380068MGIPMID:15380068
CTNND2Green Monkeysynapse organization involved_inIEAUniProtKB:Q9UQB3 and ensembl:ENSP00000307134150520179 EnsemblGO_REF:0000107
1 to 12 of 12 rows

Cellular Component
1 to 11 of 11 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CTNND2Green Monkeyadherens junction located_inIEAPANTHER:PTN000042920150520179 TreeGrafterGO_REF:0000118
CTNND2Green Monkeyanchoring junction located_inIEAUniProtKB-KW:KW-0965150520179 UniProtGO_REF:0000043
CTNND2Green Monkeyanchoring junction located_inIEAUniProtKB-SubCell:SL-0038150520179 UniProtGO_REF:0000044
CTNND2Green Monkeycytoplasm located_inIEAPANTHER:PTN000042920150520179 TreeGrafterGO_REF:0000118
CTNND2Green Monkeyglutamatergic synapse is_active_inISOCtnnd2 (Rattus norvegicus)9068941PMID:17687028SynGOPMID:17687028 and REF_RGD_ID:155230756
CTNND2Green Monkeynucleus located_inIEAPANTHER:PTN000042920150520179 TreeGrafterGO_REF:0000118
CTNND2Green Monkeyperikaryon located_inIEAUniProtKB:Q9UQB3 and ensembl:ENSP00000307134150520179 EnsemblGO_REF:0000107
CTNND2Green Monkeyplasma membrane located_inIEAPANTHER:PTN000042920150520179 TreeGrafterGO_REF:0000118
CTNND2Green Monkeypostsynaptic density is_active_inISOCtnnd2 (Rattus norvegicus)9068941PMID:12453475SynGOPMID:12453475 and REF_RGD_ID:13702427
CTNND2Green Monkeypostsynaptic density located_inIEAPANTHER:PTN000042920150520179 TreeGrafterGO_REF:0000118
CTNND2Green Monkeypostsynaptic density is_active_inISOCtnnd2 (Rattus norvegicus)9068941PMID:17687028SynGOPMID:17687028 and REF_RGD_ID:155230756
1 to 11 of 11 rows

Molecular Function

  

PMID:30032202  



CTNND2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1410,499,822 - 11,426,432 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl410,500,761 - 10,762,677 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606417,117,009 - 18,045,253 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CTNND2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38510,971,836 - 11,904,446 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl510,971,836 - 11,904,446 (-)EnsemblGRCh38hg38GRCh38
GRCh37510,971,948 - 11,904,558 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36511,024,952 - 11,957,110 (-)NCBINCBI36Build 36hg18NCBI36
Build 34511,024,951 - 11,957,110NCBI
Celera511,009,117 - 11,940,384 (-)NCBICelera
Cytogenetic Map5p15.2NCBI
HuRef510,955,380 - 11,886,519 (-)NCBIHuRef
CHM1_1510,971,878 - 11,903,969 (-)NCBICHM1_1
T2T-CHM13v2.0510,909,469 - 11,841,846 (-)NCBIT2T-CHM13v2.0
Ctnnd2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391530,172,680 - 31,029,490 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1530,172,739 - 31,029,487 (+)EnsemblGRCm39 Ensembl
GRCm381530,172,534 - 31,029,344 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1530,172,593 - 31,029,341 (+)EnsemblGRCm38mm10GRCm38
MGSCv371530,102,348 - 30,959,099 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361530,117,182 - 30,972,978 (+)NCBIMGSCv36mm8
Celera1530,892,803 - 31,737,347 (+)NCBICelera
Cytogenetic Map15B2NCBI
cM Map1512.02NCBI
Ctnnd2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8282,879,469 - 83,727,409 (+)NCBIGRCr8
mRatBN7.2281,168,525 - 82,016,495 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl281,167,117 - 82,015,764 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx288,378,864 - 89,064,522 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0286,500,610 - 87,186,098 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0281,556,878 - 82,242,356 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0283,227,247 - 84,094,315 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl283,393,282 - 84,094,315 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02103,069,807 - 103,768,936 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4282,238,091 - 83,088,901 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1282,788,377 - 82,926,463 (+)NCBI
Celera276,879,503 - 77,545,735 (+)NCBICelera
Cytogenetic Map2q22-q23NCBI
Ctnnd2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955426636,225 - 1,350,784 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955426635,287 - 1,007,389 (-)NCBIChiLan1.0ChiLan1.0
CTNND2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2411,218,251 - 12,156,782 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan159,371,858 - 10,310,393 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0511,288,652 - 12,227,569 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1511,137,843 - 11,553,313 (-)NCBIpanpan1.1PanPan1.1panPan2
CTNND2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1342,521,730 - 3,438,218 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl342,521,724 - 3,437,292 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha347,025,336 - 7,942,431 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0342,424,759 - 3,340,469 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl342,424,198 - 3,340,469 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1342,482,252 - 3,394,692 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0342,452,724 - 3,371,552 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0342,689,314 - 3,602,824 (+)NCBIUU_Cfam_GSD_1.0
Ctnnd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213235,603,479 - 236,456,778 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366432,946,899 - 3,358,093 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366432,945,994 - 3,799,321 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CTNND2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl16508,637 - 1,521,749 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.116508,630 - 1,521,773 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.216241,808 - 523,553 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Ctnnd2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247518,161,442 - 9,049,685 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247518,160,520 - 9,049,871 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in CTNND2
27285 total Variants



ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 17 33 33 60 20



Ensembl Acc Id: ENSCSAT00000015388   ⟹   ENSCSAP00000013329
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl410,500,761 - 10,762,677 (-)Ensembl
RefSeq Acc Id: XM_007961217   ⟹   XP_007959408
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1410,499,822 - 11,426,330 (-)NCBI
Vero_WHO_p1.0NW_02366606417,117,412 - 18,045,253 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007961218   ⟹   XP_007959409
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1410,499,822 - 11,426,185 (-)NCBI
Vero_WHO_p1.0NW_02366606417,117,694 - 18,045,253 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007961219   ⟹   XP_007959410
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1410,499,822 - 11,426,185 (-)NCBI
Vero_WHO_p1.0NW_02366606417,117,694 - 18,045,253 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007961220   ⟹   XP_007959411
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1410,499,822 - 11,426,432 (-)NCBI
Vero_WHO_p1.0NW_02366606417,117,009 - 18,045,253 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037988713   ⟹   XP_037844641
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366606417,433,575 - 18,045,253 (+)NCBI
Protein RefSeqs XP_007959408 (Get FASTA)   NCBI Sequence Viewer  
  XP_007959409 (Get FASTA)   NCBI Sequence Viewer  
  XP_007959410 (Get FASTA)   NCBI Sequence Viewer  
  XP_007959411 (Get FASTA)   NCBI Sequence Viewer  
  XP_037844641 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000013329.1
RefSeq Acc Id: XP_007959411   ⟸   XM_007961220
- Peptide Label: isoform X3
RefSeq Acc Id: XP_007959408   ⟸   XM_007961217
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007959410   ⟸   XM_007961219
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007959409   ⟸   XM_007961218
- Peptide Label: isoform X2
Ensembl Acc Id: ENSCSAP00000013329   ⟸   ENSCSAT00000015388



1 to 15 of 15 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCSAG00000017304 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000015388.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Armadillo UniProtKB/TrEMBL
  Plakophilin/d_Catenin UniProtKB/TrEMBL
NCBI Gene CTNND2 ENTREZGENE
PANTHER CATENIN DELTA-2 UniProtKB/TrEMBL
  PTHR10372 UniProtKB/TrEMBL
Pfam Arm UniProtKB/TrEMBL
PROSITE ARM_REPEAT UniProtKB/TrEMBL
SMART ARM UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A0D9RXJ0_CHLSB UniProtKB/TrEMBL
1 to 15 of 15 rows