Ctnnd2 (catenin delta 2) - Rat Genome Database

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Gene: Ctnnd2 (catenin delta 2) Mus musculus
Analyze
Symbol: Ctnnd2
Name: catenin delta 2 (Ensembl:catenin (cadherin associated protein), delta 2)
RGD ID: 1551365
MGI Page MGI
Description: Predicted to enable beta-catenin binding activity and cadherin binding activity. Predicted to be a structural constituent of postsynaptic density. Acts upstream of or within learning; morphogenesis of a branching structure; and regulation of synaptic plasticity. Located in postsynaptic density. Is expressed in several structures, including central nervous system; future brain; lung; sensory organ; and spinal ganglion. Human ortholog(s) of this gene implicated in anxiety disorder; major depressive disorder; and schizophrenia. Orthologous to human CTNND2 (catenin delta 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: catenin (cadherin associated protein), delta 2; catenin (cadherin-associated protein), delta 2 (neural plakophilin-related arm-repeat protein); catenin delta-2; Catn; Catnd2; neural plakophilin-related arm-repeat protein; neuro; neurojugin; neurojungin; Nprap
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391530,172,680 - 31,029,490 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1530,172,739 - 31,029,487 (+)EnsemblGRCm39 Ensembl
GRCm381530,172,534 - 31,029,344 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1530,172,593 - 31,029,341 (+)EnsemblGRCm38mm10GRCm38
MGSCv371530,102,348 - 30,959,099 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361530,117,182 - 30,972,978 (+)NCBIMGSCv36mm8
Celera1530,892,803 - 31,737,347 (+)NCBICelera
Cytogenetic Map15B2NCBI
cM Map1512.02NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. MGD IEA MGD IEA
3. Further confirmation of the association between anxiety and CTNND2: replication in humans. Nivard MG, etal., Genes Brain Behav. 2014 Feb;13(2):195-201. doi: 10.1111/gbb.12095. Epub 2013 Nov 21.
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:9342840   PMID:9971746   PMID:10349636   PMID:10413599   PMID:10626844   PMID:10753311   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12453475   PMID:12466851  
PMID:12477932   PMID:15282317   PMID:15345747   PMID:15380068   PMID:15572359   PMID:16141072   PMID:16141073   PMID:16452087   PMID:16452088   PMID:16942809   PMID:16973151   PMID:17097608  
PMID:17114649   PMID:18809907   PMID:19208628   PMID:19403811   PMID:19914181   PMID:20048286   PMID:20573893   PMID:20623542   PMID:21267068   PMID:21873635   PMID:23328440   PMID:24562000  
PMID:24727894   PMID:25523391   PMID:25635825   PMID:25724647   PMID:27507650   PMID:27568557   PMID:27889896   PMID:28671696   PMID:28705898   PMID:28706196   PMID:29254152   PMID:29875160  
PMID:30458179   PMID:30728831   PMID:30833716   PMID:30995482   PMID:31520422   PMID:32313227   PMID:32325033   PMID:33378226   PMID:34321999   PMID:34455763   PMID:35874813   PMID:36417873  
PMID:37216537   PMID:37226399   PMID:38187761  


Genomics

Comparative Map Data
Ctnnd2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391530,172,680 - 31,029,490 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1530,172,739 - 31,029,487 (+)EnsemblGRCm39 Ensembl
GRCm381530,172,534 - 31,029,344 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1530,172,593 - 31,029,341 (+)EnsemblGRCm38mm10GRCm38
MGSCv371530,102,348 - 30,959,099 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361530,117,182 - 30,972,978 (+)NCBIMGSCv36mm8
Celera1530,892,803 - 31,737,347 (+)NCBICelera
Cytogenetic Map15B2NCBI
cM Map1512.02NCBI
CTNND2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38510,971,836 - 11,904,446 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl510,971,836 - 11,904,446 (-)EnsemblGRCh38hg38GRCh38
GRCh37510,971,948 - 11,904,558 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36511,024,952 - 11,957,110 (-)NCBINCBI36Build 36hg18NCBI36
Build 34511,024,951 - 11,957,110NCBI
Celera511,009,117 - 11,940,384 (-)NCBICelera
Cytogenetic Map5p15.2NCBI
HuRef510,955,380 - 11,886,519 (-)NCBIHuRef
CHM1_1510,971,878 - 11,903,969 (-)NCBICHM1_1
T2T-CHM13v2.0510,909,469 - 11,841,846 (-)NCBIT2T-CHM13v2.0
Ctnnd2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8282,879,469 - 83,727,409 (+)NCBIGRCr8
mRatBN7.2281,168,525 - 82,016,495 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl281,167,117 - 82,015,764 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx288,378,864 - 89,064,522 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0286,500,610 - 87,186,098 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0281,556,878 - 82,242,356 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0283,227,247 - 84,094,315 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl283,393,282 - 84,094,315 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02103,069,807 - 103,768,936 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4282,238,091 - 83,088,901 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1282,788,377 - 82,926,463 (+)NCBI
Celera276,879,503 - 77,545,735 (+)NCBICelera
Cytogenetic Map2q22-q23NCBI
Ctnnd2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955426636,225 - 1,350,784 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955426635,287 - 1,007,389 (-)NCBIChiLan1.0ChiLan1.0
CTNND2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2411,218,251 - 12,156,782 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan159,371,858 - 10,310,393 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0511,288,652 - 12,227,569 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1511,137,843 - 11,553,313 (-)NCBIpanpan1.1PanPan1.1panPan2
CTNND2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1342,521,730 - 3,438,218 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl342,521,724 - 3,437,292 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha347,025,336 - 7,942,431 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0342,424,759 - 3,340,469 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl342,424,198 - 3,340,469 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1342,482,252 - 3,394,692 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0342,452,724 - 3,371,552 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0342,689,314 - 3,602,824 (+)NCBIUU_Cfam_GSD_1.0
Ctnnd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213235,603,479 - 236,456,778 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366432,946,899 - 3,358,093 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366432,945,994 - 3,799,321 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CTNND2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl16508,637 - 1,521,749 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.116508,630 - 1,521,773 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.216241,808 - 523,553 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CTNND2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1410,499,822 - 11,426,432 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl410,500,761 - 10,762,677 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606417,117,009 - 18,045,253 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ctnnd2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247518,161,442 - 9,049,685 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247518,160,520 - 9,049,871 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ctnnd2
32583 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:601
Count of miRNA genes:385
Interacting mature miRNAs:469
Transcripts:ENSMUST00000081728
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301760Dob9_mdietary obesity 9 (mouse)Body fat amountadiposity index152603568037781301Mouse
1301433Rapop5_mradiation-induced apoptosis 5 (mouse)Not determined15927302279474762Mouse
1301345Bgeq14_mbody growth early QTL 14 (mouse)Not determined152631178060311880Mouse
26884417Bzwq4_mbi-zygomatic width QTL 4, 5 week (mouse)15612948172471849Mouse
27226721Tibw8_mtibia width 8, proximal, 16 week (mouse)15692948175871849Mouse
1301499Bdln2_mbody length 2 (mouse)Not determined151564534349645470Mouse
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
12859289Criq3_mCitrobacter rodentium infection QTL 3 (mouse)152259376556593765Mouse
4142252Tailaq4_mtail length adjusted QTL 4 (mouse)Not determined348969478601286Mouse
1301406Egrd2_mearly growth rate (mouse)Not determined152631178060311880Mouse
1301951Eila3_methanol induced locomotor activity 3 (mouse)Not determined151492758748927756Mouse
1302007Bbaa14_mB.burgdorferi-associated arthritis 14 (mouse)Not determined151492758748927756Mouse
1301557Bbaa22_mB.burgdorferi-associated arthritis 22 (mouse)Not determined152446257258462805Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
26884384Skwq12_mskull length QTL 12, 16 week (mouse)15612948150763396Mouse
1357514Mbis3_mMycobacterium bovis-induced systemic lupus erythematosus 3 (mouse)Not determined162631178060311880Mouse
27226800Scvln20_msacral vertebrae length 2, 16 week (mouse)152660008666371849Mouse
1300594Eae2_msusceptibility to experimental allergic encephalomyelitis 2 (mouse)Not determined15131218736Mouse
10401902Sicd2_mseizure-induced cell death 2 (mouse)Not determined15347438971197538Mouse
1357559Scfq2_msubcutaneous fat pad weight QTL 2 (mouse)Not determined15348969478601286Mouse
27226759Feml17_mfemur length 17, 10 week (mouse)15762948155263396Mouse
26884387Skwq8_mskull length QTL 8, 10 week (mouse)15612948168271849Mouse
26884439Sklq11_mskull length QTL 11, 10 week (mouse)15812948447663396Mouse
1301450Bpq6_mblood pressure QTL 6 (mouse)Not determined152828264662282739Mouse
1357512Bsbob5_mBSB obesity 5 (mouse)Not determined152828264662282739Mouse
4141358Ath22_matherosclerosis 22 (mouse)Not determined346465237464652Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
4142448Tailq6_mtail length QTL 6 (mouse)Not determined348969478601286Mouse
27226717Tibw4_mtibia width 4, proximal, 10 week (mouse)15612948178684200Mouse
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15612948186684201Mouse
4141192Ssrq2_mstress response QTL 2 (mouse)Not determined927302256186850Mouse
4142160Femwf10_mfemur work to failure 10 (mouse)Not determined2289301456893160Mouse
4141409Radsvq1_mradiation sensitivity QTL 1 (mouse)Not determined2548497859484978Mouse
26884392Humsd8_mhumerus midshaft diameter 8, 16 week (mouse)152930014676084200Mouse
26884429Zlq6_mzygomatic length QTL 6, 10 week (mouse)15682948144963396Mouse
27095932Ulnl11_mulna length 11, 16 week (mouse)15612948176384200Mouse
27226755Feml22_mfemur length 22, 16 week (mouse)15762948159271849Mouse
27095922Pglq11_mpelvic girdle length QTL 11, 10 week (mouse)15812948438763395Mouse
1301020Pheo_mpheomelanin (mouse)Not determined151384700647847148Mouse
27226786Feml11_mfemur length 11, 5 week (mouse)15612948175871849Mouse
1302165Yv_myellow value (mouse)Not determined151384700647847148Mouse
12859288Criq1_mCitrobacter rodentium infection QTL 1 (mouse)151603395450033954Mouse
26884452Sklq17_mskull length QTL 17, 16 week (mouse)153020014657963396Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15692948184584201Mouse
4141423Nstr2_mnerve sheath tumor resistance QTL 2 (mouse)Not determined1492758748927756Mouse
26884423Zlq10_mzygomatic length QTL 10, 16 week (mouse)152060008650763396Mouse
4141952W3q7_mweight 3 weeks QTL 7 (mouse)Not determined348969478601286Mouse
1357659Epfpq4_mepididymal fat percentage QTL 4 (mouse)Not determined15348969478601286Mouse
26884409Bzwq16_mbi-zygomatic width QTL 16, 16 week (mouse)15612948138000244Mouse
26884412Bzwq10_mbi-zygomatic width QTL 10, 10 week (mouse)15612948171471849Mouse
4140994Shali3_msurvival time to hyperoxic acute lung injury 3 (mouse)Not determined927302243311880Mouse
14928313Manh78_mmandible shape 78 (mouse)152148464155484641Mouse
1300772Bglq16_mbody growth late QTL 16 (mouse)Not determined152631178060311880Mouse
11252136Modvl4_mmodifier of vacuolated lens (mouse)15562049439620614Mouse
27226773Tibl16_mtibia length 16, 10 week (mouse)15692948175871849Mouse
27095940Ulnl8_mulna length 8, 10 week (mouse)15722948155263396Mouse
10412172Habiir5_mhyperoxic acute lung injury imprinted region 5 (mouse)Not determined15927302243311880Mouse
1300967Bdt6_mbone density traits 6 (mouse)Not determined152529580659295928Mouse

Markers in Region
MHAa67c8.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381530,792,921 - 30,793,110UniSTSGRCm38
MGSCv371530,722,676 - 30,722,865UniSTSGRCm37
Celera1531,501,725 - 31,501,914UniSTS
Cytogenetic Map15B2UniSTS
Whitehead_YAC15 UniSTS
D15Mit131  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381530,374,203 - 30,374,342UniSTSGRCm38
MGSCv371530,303,958 - 30,304,097UniSTSGRCm37
Celera1531,093,196 - 31,093,335UniSTS
Cytogenetic Map15B2UniSTS
cM Map1515.6UniSTS
Whitehead Genetic1510.9UniSTS
Whitehead_YAC15 UniSTS
D15Mit202  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381530,995,683 - 30,995,798UniSTSGRCm38
MGSCv371530,925,438 - 30,925,553UniSTSGRCm37
Celera1531,709,982 - 31,710,099UniSTS
Cytogenetic Map15B2UniSTS
cM Map1514.4UniSTS
Whitehead Genetic1513.1UniSTS
Whitehead/MRC_RH15304.35UniSTS
Whitehead_YAC15 UniSTS
D15Mit203  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381530,589,760 - 30,589,835UniSTSGRCm38
MGSCv371530,519,515 - 30,519,590UniSTSGRCm37
Celera1531,307,070 - 31,307,145UniSTS
Cytogenetic Map15B2UniSTS
cM Map1518.7UniSTS
Whitehead Genetic1513.1UniSTS
Whitehead_YAC15 UniSTS
D15Mit249  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381530,239,353 - 30,239,623UniSTSGRCm38
MGSCv371530,169,108 - 30,169,378UniSTSGRCm37
Celera1530,958,555 - 30,958,837UniSTS
Cytogenetic Map15B2UniSTS
cM Map15 UniSTS
Whitehead_YAC15 UniSTS
D15Mit98  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381530,273,538 - 30,273,687UniSTSGRCm38
MGSCv371530,203,293 - 30,203,442UniSTSGRCm37
Celera1530,992,566 - 30,992,715UniSTS
Cytogenetic Map15B2UniSTS
cM Map1513.6UniSTS
Whitehead Genetic1510.9UniSTS
Whitehead_YAC15 UniSTS
D1Mit413  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381530,605,241 - 30,605,333UniSTSGRCm38
MGSCv371530,534,996 - 30,535,088UniSTSGRCm37
Celera1531,322,897 - 31,322,989UniSTS
Cytogenetic Map15B2UniSTS
cM Map123.6UniSTS
cM Map15 UniSTS
Whitehead Genetic123.0UniSTS
Whitehead_YAC1 UniSTS
U90331  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381531,027,981 - 31,028,123UniSTSGRCm38
MGSCv371530,957,736 - 30,957,878UniSTSGRCm37
Celera1531,735,989 - 31,736,131UniSTS
Cytogenetic Map15B2UniSTS
Whitehead/MRC_RH15302.24UniSTS
D15Mit136  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381530,846,860 - 30,847,002UniSTSGRCm38
MGSCv371530,776,615 - 30,776,757UniSTSGRCm37
Celera1531,560,016 - 31,560,156UniSTS
Cytogenetic Map15B2UniSTS
cM Map1514.2UniSTS
Whitehead Genetic1513.1UniSTS
Whitehead/MRC_RH15304.45UniSTS
Whitehead_YAC15 UniSTS
Ctnnd2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map15B2UniSTS
cM Map15 UniSTS
D5S2317  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381531,028,430 - 31,028,528UniSTSGRCm38
MGSCv371530,958,185 - 30,958,283UniSTSGRCm37
Celera1531,736,433 - 31,736,531UniSTS
Cytogenetic Map15B2UniSTS
D10Bir12  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381530,962,629 - 30,963,541UniSTSGRCm38
GRCm381085,318,425 - 85,319,354UniSTSGRCm38
MGSCv371530,892,384 - 30,893,296UniSTSGRCm37
MGSCv371084,781,170 - 84,782,099UniSTSGRCm37
Celera1531,676,819 - 31,677,731UniSTS
Cytogenetic Map15B2UniSTS
cM Map1260.0UniSTS
cM Map1168.0UniSTS
cM Map1059.0UniSTS
cM Map1054.0UniSTS
cM Map1732.0UniSTS
cM Map1640.3UniSTS
cM Map1611.1UniSTS
cM MapX56.0UniSTS
cM Map929.0UniSTS
cM Map421.5UniSTS
cM Map247.0UniSTS
cM Map180.2UniSTS
cM Map159.9UniSTS
cM Map111.2UniSTS
cM Map116.0UniSTS
cM Map87.0UniSTS
cM Map68.0UniSTS
cM Map39.3UniSTS
cM MapY UniSTS
cM Map1546.0UniSTS
cM Map1743.0UniSTS
cM Map1645.5UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001355502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_008729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006520033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030248378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC105408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC110569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC123531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC124675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC124993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC134414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC139197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AEKQ02125417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC138260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC138261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE847220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU611309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U90331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000081728   ⟹   ENSMUSP00000080427
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1530,172,739 - 31,029,487 (+)Ensembl
GRCm38.p6 Ensembl1530,172,593 - 31,029,341 (+)Ensembl
RefSeq Acc Id: ENSMUST00000226116   ⟹   ENSMUSP00000154324
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1530,173,113 - 30,647,038 (+)Ensembl
GRCm38.p6 Ensembl1530,172,967 - 30,646,892 (+)Ensembl
RefSeq Acc Id: ENSMUST00000226119   ⟹   ENSMUSP00000154410
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1530,173,197 - 31,028,187 (+)Ensembl
GRCm38.p6 Ensembl1530,173,051 - 31,028,041 (+)Ensembl
RefSeq Acc Id: ENSMUST00000226797
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1530,173,284 - 30,481,495 (+)Ensembl
GRCm38.p6 Ensembl1530,173,138 - 30,481,349 (+)Ensembl
RefSeq Acc Id: ENSMUST00000227004
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1530,457,934 - 30,504,584 (+)Ensembl
GRCm38.p6 Ensembl1530,457,788 - 30,504,438 (+)Ensembl
RefSeq Acc Id: ENSMUST00000227029
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1531,004,942 - 31,020,922 (+)Ensembl
GRCm38.p6 Ensembl1531,004,796 - 31,020,776 (+)Ensembl
RefSeq Acc Id: ENSMUST00000227065
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1530,683,305 - 30,807,046 (+)Ensembl
GRCm38.p6 Ensembl1530,683,159 - 30,806,900 (+)Ensembl
RefSeq Acc Id: ENSMUST00000227857
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1530,173,137 - 30,185,582 (+)Ensembl
GRCm38.p6 Ensembl1530,172,991 - 30,185,436 (+)Ensembl
RefSeq Acc Id: ENSMUST00000228282   ⟹   ENSMUSP00000154219
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1530,457,821 - 30,647,015 (+)Ensembl
GRCm38.p6 Ensembl1530,457,675 - 30,646,869 (+)Ensembl
RefSeq Acc Id: ENSMUST00000228695
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1530,457,819 - 30,481,050 (+)Ensembl
GRCm38.p6 Ensembl1530,457,673 - 30,480,904 (+)Ensembl
RefSeq Acc Id: ENSMUST00000228753
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1530,646,678 - 30,671,270 (+)Ensembl
GRCm38.p6 Ensembl1530,646,532 - 30,671,124 (+)Ensembl
RefSeq Acc Id: ENSMUST00000228827
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1531,026,542 - 31,028,555 (+)Ensembl
GRCm38.p6 Ensembl1531,026,396 - 31,028,409 (+)Ensembl
RefSeq Acc Id: NM_001355502   ⟹   NP_001342431
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391530,172,680 - 31,029,490 (+)NCBI
GRCm381530,172,534 - 31,029,344 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001411452   ⟹   NP_001398381
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391530,457,819 - 31,029,490 (+)NCBI
RefSeq Acc Id: NM_001411453   ⟹   NP_001398382
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391530,457,819 - 31,029,490 (+)NCBI
RefSeq Acc Id: NM_008729   ⟹   NP_032755
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391530,172,680 - 31,029,490 (+)NCBI
GRCm381530,172,534 - 31,029,344 (+)NCBI
MGSCv371530,102,348 - 30,959,099 (+)RGD
Celera1530,892,803 - 31,737,347 (+)NCBI
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006520033   ⟹   XP_006520096
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391530,457,745 - 31,028,778 (+)NCBI
GRCm381530,457,598 - 31,029,340 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030248378   ⟹   XP_030104238
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391530,457,745 - 31,028,778 (+)NCBI
GRCm381530,457,599 - 31,029,340 (+)NCBI
Sequence:
RefSeq Acc Id: NP_032755   ⟸   NM_008729
- Peptide Label: isoform 1
- UniProtKB: B2RR80 (UniProtKB/Swiss-Prot),   O35927 (UniProtKB/Swiss-Prot),   E9QKH8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006520096   ⟸   XM_006520033
- Peptide Label: isoform X1
- UniProtKB: O35927 (UniProtKB/Swiss-Prot),   B2RR80 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001342431   ⟸   NM_001355502
- Peptide Label: isoform 2
- UniProtKB: O35927 (UniProtKB/Swiss-Prot),   B2RR80 (UniProtKB/Swiss-Prot),   B7ZNF6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030104238   ⟸   XM_030248378
- Peptide Label: isoform X1
- UniProtKB: O35927 (UniProtKB/Swiss-Prot),   B2RR80 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000154219   ⟸   ENSMUST00000228282
RefSeq Acc Id: ENSMUSP00000080427   ⟸   ENSMUST00000081728
RefSeq Acc Id: ENSMUSP00000154324   ⟸   ENSMUST00000226116
RefSeq Acc Id: ENSMUSP00000154410   ⟸   ENSMUST00000226119
RefSeq Acc Id: NP_001398381   ⟸   NM_001411452
- Peptide Label: isoform 3
- UniProtKB: O35927 (UniProtKB/Swiss-Prot),   B2RR80 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001398382   ⟸   NM_001411453
- Peptide Label: isoform 3
- UniProtKB: O35927 (UniProtKB/Swiss-Prot),   B2RR80 (UniProtKB/Swiss-Prot)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O35927-F1-model_v2 AlphaFold O35927 1-1247 view protein structure

Promoters
RGD ID:6825888
Promoter ID:MM_KWN:18174
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:ENSMUST00000110414,   ENSMUST00000110415,   NM_008729
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361530,102,631 - 30,103,131 (+)MPROMDB
RGD ID:8683512
Promoter ID:EPDNEW_M19786
Type:initiation region
Name:Ctnnd2_1
Description:Mus musculus catenin , delta 2 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M19787  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381530,172,640 - 30,172,700EPDNEW
RGD ID:8683514
Promoter ID:EPDNEW_M19787
Type:initiation region
Name:Ctnnd2_2
Description:Mus musculus catenin , delta 2 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M19786  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381530,172,933 - 30,172,993EPDNEW
RGD ID:6847179
Promoter ID:MM_ACW:17683
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:CTNND2.BSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361530,576,636 - 30,577,136 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1195966 AgrOrtholog
Ensembl Genes ENSMUSG00000022240 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000081728 ENTREZGENE
  ENSMUST00000081728.7 UniProtKB/TrEMBL
  ENSMUST00000226116.2 UniProtKB/TrEMBL
  ENSMUST00000226119 ENTREZGENE
  ENSMUST00000226119.2 UniProtKB/TrEMBL
  ENSMUST00000228282.2 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Armadillo UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Plakophilin/d_Catenin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:18163 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1195966 ENTREZGENE
NCBI Gene 18163 ENTREZGENE
PANTHER CATENIN DELTA-2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10372 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Arm UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ctnnd2 PhenoGen
PROSITE ARM_REPEAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ARM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A2I3BQV6_MOUSE UniProtKB/TrEMBL
  A0A2I3BQV7_MOUSE UniProtKB/TrEMBL
  B2RR80 ENTREZGENE
  B7ZNF6 ENTREZGENE, UniProtKB/TrEMBL
  CTND2_MOUSE UniProtKB/Swiss-Prot
  E9QKH8 ENTREZGENE, UniProtKB/TrEMBL
  O35927 ENTREZGENE
  Q3TPK9_MOUSE UniProtKB/TrEMBL
  Q3U8L7_MOUSE UniProtKB/TrEMBL
  Q3US07_MOUSE UniProtKB/TrEMBL
  Q3USD8_MOUSE UniProtKB/TrEMBL
  Q3UXX4_MOUSE UniProtKB/TrEMBL
UniProt Secondary B2RR80 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-07-04 Ctnnd2  catenin delta 2  Ctnnd2  catenin (cadherin associated protein), delta 2  Symbol and/or name change 5135510 APPROVED