PYCR1 (pyrroline-5-carboxylate reductase 1) - Rat Genome Database

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Gene: PYCR1 (pyrroline-5-carboxylate reductase 1) Chlorocebus sabaeus
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Symbol: PYCR1
Name: pyrroline-5-carboxylate reductase 1
RGD ID: 18375785
Description: ENCODES a protein that exhibits identical protein binding (inferred); oxidoreductase activity (inferred); pyrroline-5-carboxylate reductase activity (inferred); INVOLVED IN cellular response to oxidative stress (inferred); L-proline biosynthetic process (inferred); negative regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway (inferred); ASSOCIATED WITH Autosomal Recessive Cutis Laxa (ortholog); autosomal recessive cutis laxa type IIB (ortholog); autosomal recessive cutis laxa type IIIB (ortholog); FOUND IN mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: pyrroline-5-carboxylate reductase 1, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11673,805,680 - 73,810,707 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1673,805,409 - 73,810,199 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607745,257,773 - 45,262,751 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PYCR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11673,805,680 - 73,810,707 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1673,805,409 - 73,810,199 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607745,257,773 - 45,262,751 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
PYCR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381781,932,391 - 81,937,300 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1781,932,384 - 81,942,412 (-)EnsemblGRCh38hg38GRCh38
GRCh371779,890,267 - 79,895,176 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361777,483,558 - 77,488,259 (-)NCBINCBI36Build 36hg18NCBI36
Celera1776,494,307 - 76,499,008 (-)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1775,291,232 - 75,295,933 (-)NCBIHuRef
CHM1_11779,976,471 - 79,981,172 (-)NCBICHM1_1
T2T-CHM13v2.01782,799,550 - 82,804,459 (-)NCBIT2T-CHM13v2.0
Pycr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911120,527,591 - 120,534,602 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11120,526,538 - 120,534,595 (-)EnsemblGRCm39 Ensembl
GRCm3811120,638,998 - 120,643,748 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11120,635,712 - 120,643,769 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711120,497,026 - 120,504,984 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611120,455,514 - 120,459,794 (-)NCBIMGSCv36mm8
Celera11132,371,062 - 132,379,022 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1184.37NCBI
Pycr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810106,416,056 - 106,420,982 (-)NCBIGRCr8
mRatBN7.210105,917,732 - 105,922,658 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10105,917,680 - 105,922,549 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10111,022,441 - 111,025,645 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010110,485,479 - 110,488,683 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010105,839,131 - 105,842,439 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010109,817,300 - 109,822,218 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10109,818,177 - 109,821,807 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010109,411,300 - 109,414,609 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410110,030,931 - 110,035,883 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110110,046,548 - 110,050,508 (-)NCBI
Celera10104,462,087 - 104,465,395 (-)NCBICelera
Cytogenetic Map10q32.3NCBI
Pycr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555061,231,863 - 1,236,550 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555061,231,874 - 1,236,550 (+)NCBIChiLan1.0ChiLan1.0
PYCR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21998,468,518 - 98,479,691 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan117103,369,297 - 103,386,282 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01776,337,991 - 76,348,207 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11782,040,824 - 82,045,691 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1782,040,824 - 82,045,686 (-)Ensemblpanpan1.1panPan2
PYCR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.19360,353 - 364,795 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl9360,376 - 364,570 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha9962,468 - 966,895 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.09953,687 - 958,114 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl9953,684 - 958,106 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.19978,841 - 983,268 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.091,105,463 - 1,109,889 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.091,184,099 - 1,188,527 (+)NCBIUU_Cfam_GSD_1.0
Pycr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602968,399 - 972,773 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365945,439,175 - 5,443,564 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365945,439,911 - 5,443,535 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PYCR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl121,060,570 - 1,064,805 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1121,060,028 - 1,064,808 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Pycr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480110,776,747 - 10,781,614 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480110,777,407 - 10,781,572 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 20 20
Low 16 20 40
Below cutoff

Sequence


RefSeq Acc Id: ENSCSAT00000000217   ⟹   ENSCSAP00000015836
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1673,805,409 - 73,810,199 (-)Ensembl
RefSeq Acc Id: XM_008013295   ⟹   XP_008011486
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11673,805,680 - 73,810,707 (-)NCBI
Vero_WHO_p1.0NW_02366607745,257,784 - 45,262,751 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008013296   ⟹   XP_008011487
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11673,805,680 - 73,810,203 (-)NCBI
Vero_WHO_p1.0NW_02366607745,257,773 - 45,262,347 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008013297   ⟹   XP_008011488
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11673,805,680 - 73,810,157 (-)NCBI
Vero_WHO_p1.0NW_02366607745,257,784 - 45,262,254 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008011486 (Get FASTA)   NCBI Sequence Viewer  
  XP_008011487 (Get FASTA)   NCBI Sequence Viewer  
  XP_008011488 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000015836.1
RefSeq Acc Id: XP_008011486   ⟸   XM_008013295
- Peptide Label: isoform X2
- UniProtKB: A0A0D9S4P7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008011487   ⟸   XM_008013296
- Peptide Label: isoform X1
- UniProtKB: A0A0D9S4P7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008011488   ⟸   XM_008013297
- Peptide Label: isoform X2
- UniProtKB: A0A0D9S4P7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000015836   ⟸   ENSCSAT00000000217


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000002197 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000000217.1 UniProtKB/TrEMBL
Gene3D-CATH NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
  ProC C-terminal domain-like UniProtKB/TrEMBL
InterPro 6-PGluconate_DH-like_C_sf UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
  P5C_Rdtase_cat_N UniProtKB/TrEMBL
  P5CR_dimer UniProtKB/TrEMBL
  Pyrroline-COOH_reductase UniProtKB/TrEMBL
KEGG Report csab:103243742 UniProtKB/TrEMBL
NCBI Gene PYCR1 ENTREZGENE
PANTHER PTHR11645 UniProtKB/TrEMBL
  PYRROLINE-5-CARBOXYLATE REDUCTASE 1, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam F420_oxidored UniProtKB/TrEMBL
  P5CR_dimer UniProtKB/TrEMBL
PIRSF Pyrrol-5-carb_rd UniProtKB/TrEMBL
PROSITE P5CR UniProtKB/TrEMBL
Superfamily-SCOP SSF48179 UniProtKB/TrEMBL
  SSF51735 UniProtKB/TrEMBL
UniProt A0A0D9S4P7 ENTREZGENE, UniProtKB/TrEMBL