PYCR1 (pyrroline-5-carboxylate reductase 1) - Rat Genome Database

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Gene: PYCR1 (pyrroline-5-carboxylate reductase 1) Pan paniscus
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Symbol: PYCR1
Name: pyrroline-5-carboxylate reductase 1
RGD ID: 11946115
Description: ENCODES a protein that exhibits identical protein binding (ortholog); pyrroline-5-carboxylate reductase activity (ortholog); INVOLVED IN cellular response to oxidative stress (ortholog); negative regulation of hydrogen peroxide-induced cell death (ortholog); proline biosynthetic process (ortholog); ASSOCIATED WITH Autosomal Recessive Cutis Laxa (ortholog); autosomal recessive cutis laxa type IIB (ortholog); autosomal recessive cutis laxa type IIIB (ortholog); FOUND IN mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: pyrroline-5-carboxylate reductase 1, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11782,040,824 - 82,045,691 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1782,040,824 - 82,045,686 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01776,337,991 - 76,348,207 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
PYCR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11782,040,824 - 82,045,691 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1782,040,824 - 82,045,686 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01776,337,991 - 76,348,207 (-)NCBIMhudiblu_PPA_v0panPan3
PYCR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1781,932,384 - 81,942,412 (-)EnsemblGRCh38hg38GRCh38
GRCh381781,932,391 - 81,937,300 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371779,890,267 - 79,895,176 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361777,483,558 - 77,488,259 (-)NCBINCBI36hg18NCBI36
Celera1776,494,307 - 76,499,008 (-)NCBI
Cytogenetic Map17q25.3NCBI
HuRef1775,291,232 - 75,295,933 (-)NCBIHuRef
CHM1_11779,976,471 - 79,981,172 (-)NCBICHM1_1
Pycr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911120,527,591 - 120,534,602 (-)NCBIGRCm39mm39
GRCm39 Ensembl11120,526,538 - 120,534,595 (-)Ensembl
GRCm3811120,638,998 - 120,643,748 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11120,635,712 - 120,643,769 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711120,497,026 - 120,504,984 (-)NCBIGRCm37mm9NCBIm37
MGSCv3611120,455,514 - 120,459,794 (-)NCBImm8
Celera11132,371,062 - 132,379,022 (-)NCBICelera
Cytogenetic Map11E2NCBI
Pycr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.210105,917,732 - 105,922,658 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl10105,917,680 - 105,922,549 (-)Ensembl
Rnor_6.010109,817,300 - 109,822,218 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10109,818,177 - 109,821,807 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010109,411,300 - 109,414,609 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410110,030,931 - 110,035,883 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.110110,046,548 - 110,050,508 (-)NCBI
Celera10104,462,087 - 104,465,395 (-)NCBICelera
Cytogenetic Map10q32.3NCBI
Pycr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555061,231,863 - 1,236,550 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555061,231,874 - 1,236,550 (+)NCBIChiLan1.0ChiLan1.0
PYCR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.19360,353 - 364,795 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl9360,376 - 364,570 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha9962,468 - 966,895 (+)NCBI
ROS_Cfam_1.09953,687 - 958,114 (+)NCBI
UMICH_Zoey_3.19978,841 - 983,268 (+)NCBI
UNSW_CanFamBas_1.091,105,463 - 1,109,889 (+)NCBI
UU_Cfam_GSD_1.091,184,099 - 1,188,527 (+)NCBI
Pycr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602968,399 - 972,773 (+)NCBI
SpeTri2.0NW_0049365945,439,911 - 5,443,535 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PYCR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl121,060,568 - 1,064,809 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1121,060,028 - 1,064,808 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PYCR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11673,805,680 - 73,810,707 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1673,805,409 - 73,810,199 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607745,257,773 - 45,262,751 (-)NCBIVero_WHO_p1.0
Pycr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462480110,777,407 - 10,781,572 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000057164   ⟹   ENSPPAP00000034283
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1782,040,824 - 82,045,686 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000057189   ⟹   ENSPPAP00000034308
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1782,040,824 - 82,045,677 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000057224   ⟹   ENSPPAP00000034343
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1782,041,648 - 82,045,244 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000057225   ⟹   ENSPPAP00000034344
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1782,041,648 - 82,045,244 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000057227   ⟹   ENSPPAP00000034346
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1782,041,790 - 82,045,244 (-)Ensembl
RefSeq Acc Id: XM_008956485   ⟹   XP_008954733
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11782,040,824 - 82,045,689 (-)NCBI
Mhudiblu_PPA_v01776,337,991 - 76,342,863 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008956488   ⟹   XP_008954736
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11782,040,824 - 82,045,618 (-)NCBI
Mhudiblu_PPA_v01776,337,991 - 76,342,807 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034943140   ⟹   XP_034799031
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01776,337,991 - 76,342,927 (-)NCBI
RefSeq Acc Id: XM_034943141   ⟹   XP_034799032
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01776,337,991 - 76,342,800 (-)NCBI
RefSeq Acc Id: XM_034943142   ⟹   XP_034799033
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01776,337,991 - 76,348,207 (-)NCBI
RefSeq Acc Id: XM_034943143   ⟹   XP_034799034
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01776,337,991 - 76,342,927 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_008954733   ⟸   XM_008956485
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008954736   ⟸   XM_008956488
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_034799033   ⟸   XM_034943142
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034799034   ⟸   XM_034943143
- Peptide Label: isoform X3
RefSeq Acc Id: XP_034799031   ⟸   XM_034943140
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034799032   ⟸   XM_034943141
- Peptide Label: isoform X2
RefSeq Acc Id: ENSPPAP00000034283   ⟸   ENSPPAT00000057164
RefSeq Acc Id: ENSPPAP00000034308   ⟸   ENSPPAT00000057189
RefSeq Acc Id: ENSPPAP00000034346   ⟸   ENSPPAT00000057227
RefSeq Acc Id: ENSPPAP00000034343   ⟸   ENSPPAT00000057224
RefSeq Acc Id: ENSPPAP00000034344   ⟸   ENSPPAT00000057225


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000039994 Ensembl, ENTREZGENE
Ensembl Protein ENSPPAP00000034283 ENTREZGENE
NCBI Gene PYCR1 ENTREZGENE