SNTN (sentan, cilia apical structure protein)

Gene: SNTN (sentan, cilia apical structure protein) Chlorocebus sabaeus

Analyze

Symbol:

SNTN

Name:

sentan, cilia apical structure protein

RGD ID:

18360910

Description:

ASSOCIATED WITH genetic disease (ortholog); FOUND IN cilium (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

sentan

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	24,697,324 - 24,709,576 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666041	142,113,490 - 142,125,952 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cilium (ISO)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

SNTN
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	24,697,324 - 24,709,576 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666041	142,113,490 - 142,125,952 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

SNTN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	63,652,675 - 63,665,212 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	63,652,675 - 63,679,020 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	63,638,351 - 63,650,888 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	63,613,384 - 63,625,933 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	3	63,655,601 - 63,668,154 (+)	NCBI		Celera
Cytogenetic Map	3	p14.2	NCBI
HuRef	3	63,735,531 - 63,748,076 (+)	NCBI		HuRef
CHM1_1	3	63,589,797 - 63,602,351 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	63,696,298 - 63,708,831 (+)	NCBI		T2T-CHM13v2.0

Sntn
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	8,786,615 - 8,798,887 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	8,786,615 - 8,798,887 (-)	Ensembl		GRCm39 Ensembl
GRCm38	14	13,670,876 - 13,683,148 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	13,670,876 - 13,683,148 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	14,503,390 - 14,515,662 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	12,464,143 - 12,476,415 (+)	NCBI		MGSCv36	mm8
Celera	14	9,314,695 - 9,327,135 (+)	NCBI		Celera
Cytogenetic Map	14	A1	NCBI
cM Map	14	6.93	NCBI

Sntn
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	13,943,052 - 13,956,109 (-)	NCBI		GRCr8
mRatBN7.2	15	11,512,563 - 11,525,608 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	11,512,563 - 11,525,603 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	13,626,907 - 13,640,013 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	14,588,819 - 14,601,924 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	12,840,191 - 12,853,297 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	14,497,770 - 14,510,828 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	14,497,770 - 14,510,828 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	18,501,194 - 18,514,256 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	13,073,259 - 13,086,693 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	15	11,514,566 - 11,527,178 (-)	NCBI		Celera
Cytogenetic Map	15	p16	NCBI

Sntn
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955517	2,209,843 - 2,234,113 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955517	2,210,700 - 2,233,760 (-)	NCBI	ChiLan1.0	ChiLan1.0

SNTN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	63,578,041 - 63,590,634 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	63,582,828 - 63,595,402 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	63,560,204 - 63,572,211 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	64,941,058 - 64,952,774 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	64,941,058 - 64,964,255 (+)	Ensembl	panpan1.1		panPan2

SNTN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	27,532,916 - 27,548,331 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	27,533,739 - 27,547,972 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	27,457,119 - 27,472,179 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	27,769,816 - 27,784,898 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	27,769,807 - 27,784,905 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	27,266,816 - 27,281,849 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	27,616,443 - 27,631,469 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	27,719,787 - 27,734,858 (-)	NCBI		UU_Cfam_GSD_1.0

Sntn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	164,348,246 - 164,362,752 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936637	2,738,068 - 2,745,909 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936637	2,738,068 - 2,753,610 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SNTN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	45,187,379 - 45,200,718 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	45,187,385 - 45,200,586 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	49,668,180 - 49,681,418 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Sntn
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624888	2,278,004 - 2,289,695 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624888	2,277,215 - 2,290,237 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007984866	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_007984866 ⟹ XP_007983057

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	22	24,697,324 - 24,709,576 (+)	NCBI
Vero_WHO_p1.0	NW_023666041	142,113,490 - 142,125,952 (-)	NCBI

Sequence:

show sequence

TGTTTCCCCAGCAGCTTGTACAGTGCCTGGCTCGCAGTAGGCATGAAAGTGTTTATTGAATGAT
TTGATGTCTACATACAATGACGCTGTGGAAAGTTCTTCTAGACACGCAATCGTATAGTTGTCAT
GGAGTGAATGACAATAGTAACAGTGGGCAAGTGGCTGTTGCTTAGGAAGGACTGACACAAAACA
GAAGACAAGAGAATGGGTGGCTGTATGCACATTACCTAGCACAAAGCTCTCCACTTGGAAGGGG
ATCCCAATCCTTGTGCAGCCCCAACATCCACCTGAGCACCTCGGAAAATGCCCAAAAGCATTTC
AATATCCAAACAACTGGCTTCAGTGAAAGCTCTGAGGAAGTGCTCAGATCTGGAAAAAGCCATT
GCCACCACTGCTCTGATTTTCAGAAATTCTTCTGACTCTGATGGTAAACTTGAAAAAGCTACTG
CCAAAGATCGGCTGCAAACCCAATTTGGGAATTTCACAGAGGGACAAGAAACCAAGCCAAAATA
CAGAGAGATCCTTTCTGAACTTGATGAGCACACAGAAAATAAGCTATATTTTGAAGACTTCATG
ATCTTGCTCTTAAGCATCACTGTCATGTCAGATCTGCTACAAAATATATGGAGTGTAAAAATTA
TGAAATAAACAGTCTCAAATATGATGTATAAAATAATGGCAAAAGACAATAAAATGTTTCCATC
TTATTTTTGATTAATTGAATATATCAATCATGCAGCTGGAATTGCCTAGGATAGTTCTGATTGC
TGGTATTCAGATCCAATGTAACTCCAAAAATTTACCCATACACTTCAGGAATGTTTGAATGATA
AGGTCTCTGTATGCTTTACAATATGATAGATTTGATACCACTGAATAATACATTGCTTTTGCTG
AGTCAAAGGTGACCTAGAGCACTCTACTTATAGTCATTGAGTCACTCATTCATTCACTAAACAT
TTGTTGAGCATCTACTTGATGGGACTGCTGGGGATACAGTAATGAATCAGGCAGAC

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Protein Sequences


Protein RefSeqs	XP_007983057	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_007983057 ⟸ XM_007984866

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	SNTN	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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