RPL24 (ribosomal protein L24) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: RPL24 (ribosomal protein L24) Chlorocebus sabaeus
Analyze
Symbol: RPL24
Name: ribosomal protein L24
RGD ID: 18339899
Description: ENCODES a protein that exhibits structural constituent of ribosome (ortholog); INVOLVED IN cytoplasmic translation (ortholog); exit from mitosis (ortholog); optic nerve development (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); optic atrophy (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); cytosolic large ribosomal subunit (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L24
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12279,202,208 - 79,208,251 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604187,348,872 - 87,354,987 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
RPL24
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12279,202,208 - 79,208,251 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604187,348,872 - 87,354,987 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
RPL24
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383101,681,091 - 101,686,718 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3101,681,091 - 101,686,733 (-)EnsemblGRCh38hg38GRCh38
GRCh373101,399,935 - 101,405,562 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363102,882,624 - 102,888,253 (-)NCBINCBI36Build 36hg18NCBI36
Build 343102,882,625 - 102,888,249NCBI
Celera399,793,041 - 99,798,669 (-)NCBICelera
Cytogenetic Map3q12.3NCBI
HuRef398,769,048 - 98,774,665 (-)NCBIHuRef
CHM1_13101,363,237 - 101,368,870 (-)NCBICHM1_1
T2T-CHM13v2.03104,393,768 - 104,399,383 (-)NCBIT2T-CHM13v2.0
Rpl24
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391655,786,638 - 55,791,800 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1655,786,638 - 55,791,798 (+)EnsemblGRCm39 Ensembl
GRCm381655,966,275 - 55,971,437 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1655,966,275 - 55,971,435 (+)EnsemblGRCm38mm10GRCm38
MGSCv371655,966,388 - 55,971,550 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361655,891,344 - 55,896,385 (+)NCBIMGSCv36mm8
Celera1656,281,348 - 56,286,510 (+)NCBICelera
Cytogenetic Map16C1.1NCBI
cM Map1633.74NCBI
Rpl24
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81158,122,997 - 58,128,405 (-)NCBIGRCr8
mRatBN7.21144,653,937 - 44,659,346 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1144,653,937 - 44,659,370 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1153,430,370 - 53,435,783 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01146,091,999 - 46,097,412 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01145,216,161 - 45,221,574 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01147,116,885 - 47,122,093 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1147,116,886 - 47,122,095 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01150,298,775 - 50,303,983 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41145,628,842 - 45,634,050 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11145,686,430 - 45,691,769 (-)NCBI
Celera1144,404,741 - 44,409,949 (-)NCBICelera
Cytogenetic Map11q12NCBI
Rpl24
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554273,201,173 - 3,204,516 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554273,201,173 - 3,204,516 (-)NCBIChiLan1.0ChiLan1.0
RPL24
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2299,617,782 - 99,623,476 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1399,622,560 - 99,628,254 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0398,769,830 - 98,775,532 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13105,449,515 - 105,455,154 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3105,449,515 - 105,455,135 (-)Ensemblpanpan1.1panPan2
RPL24
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1338,018,183 - 8,023,779 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl338,018,190 - 8,073,124 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha338,172,569 - 8,178,115 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0338,157,267 - 8,162,819 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl338,157,272 - 8,162,817 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1338,044,825 - 8,050,385 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0338,091,223 - 8,096,778 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0338,431,583 - 8,437,141 (-)NCBIUU_Cfam_GSD_1.0
Rpl24
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602148,855,535 - 148,860,261 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366301,753,513 - 1,758,155 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366301,753,485 - 1,758,155 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL24
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13157,411,987 - 157,418,660 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113157,411,933 - 157,418,663 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213166,892,447 - 166,899,178 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Rpl24
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478915,486,405 - 15,490,805 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478915,486,405 - 15,490,904 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RPL24
146 total Variants

Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007985964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_007985964   ⟹   XP_007984155
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12279,202,208 - 79,208,251 (+)NCBI
Vero_WHO_p1.0NW_02366604187,348,872 - 87,354,987 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007984155 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_007984155   ⟸   XM_007985964


Additional Information

Database Acc Id Source(s)
NCBI Gene RPL24 ENTREZGENE