Rpl24 (ribosomal protein L24) - Rat Genome Database

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Gene: Rpl24 (ribosomal protein L24) Chinchilla lanigera
Analyze
Symbol: Rpl24
Name: ribosomal protein L24
RGD ID: 8842163
Description: ENCODES a protein that exhibits structural constituent of ribosome (ortholog); INVOLVED IN cytoplasmic translation (ortholog); exit from mitosis (ortholog); optic nerve development (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); optic atrophy (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); cytosolic large ribosomal subunit (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L24
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554273,201,173 - 3,204,516 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554273,201,173 - 3,204,516 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Rpl24
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554273,201,173 - 3,204,516 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554273,201,173 - 3,204,516 (-)NCBIChiLan1.0ChiLan1.0
RPL24
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383101,681,091 - 101,686,718 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3101,681,091 - 101,686,733 (-)EnsemblGRCh38hg38GRCh38
GRCh373101,399,935 - 101,405,562 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363102,882,624 - 102,888,253 (-)NCBINCBI36Build 36hg18NCBI36
Build 343102,882,625 - 102,888,249NCBI
Celera399,793,041 - 99,798,669 (-)NCBICelera
Cytogenetic Map3q12.3NCBI
HuRef398,769,048 - 98,774,665 (-)NCBIHuRef
CHM1_13101,363,237 - 101,368,870 (-)NCBICHM1_1
T2T-CHM13v2.03104,393,768 - 104,399,383 (-)NCBIT2T-CHM13v2.0
Rpl24
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391655,786,638 - 55,791,800 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1655,786,638 - 55,791,798 (+)EnsemblGRCm39 Ensembl
GRCm381655,966,275 - 55,971,437 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1655,966,275 - 55,971,435 (+)EnsemblGRCm38mm10GRCm38
MGSCv371655,966,388 - 55,971,550 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361655,891,344 - 55,896,385 (+)NCBIMGSCv36mm8
Celera1656,281,348 - 56,286,510 (+)NCBICelera
Cytogenetic Map16C1.1NCBI
cM Map1633.74NCBI
Rpl24
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81158,122,997 - 58,128,405 (-)NCBIGRCr8
mRatBN7.21144,653,937 - 44,659,346 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1144,653,937 - 44,659,370 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1153,430,370 - 53,435,783 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01146,091,999 - 46,097,412 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01145,216,161 - 45,221,574 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01147,116,885 - 47,122,093 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1147,116,886 - 47,122,095 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01150,298,775 - 50,303,983 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41145,628,842 - 45,634,050 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11145,686,430 - 45,691,769 (-)NCBI
Celera1144,404,741 - 44,409,949 (-)NCBICelera
Cytogenetic Map11q12NCBI
RPL24
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2299,617,782 - 99,623,476 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1399,622,560 - 99,628,254 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0398,769,830 - 98,775,532 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13105,449,515 - 105,455,154 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3105,449,515 - 105,455,135 (-)Ensemblpanpan1.1panPan2
RPL24
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1338,018,183 - 8,023,779 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl338,018,190 - 8,073,124 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha338,172,569 - 8,178,115 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0338,157,267 - 8,162,819 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl338,157,272 - 8,162,817 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1338,044,825 - 8,050,385 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0338,091,223 - 8,096,778 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0338,431,583 - 8,437,141 (-)NCBIUU_Cfam_GSD_1.0
Rpl24
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602148,855,535 - 148,860,261 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366301,753,513 - 1,758,155 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366301,753,485 - 1,758,155 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL24
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13157,411,987 - 157,418,660 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113157,411,933 - 157,418,663 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213166,892,447 - 166,899,178 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPL24
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12279,202,208 - 79,208,251 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604187,348,872 - 87,354,987 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl24
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478915,486,405 - 15,490,805 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478915,486,405 - 15,490,904 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000015819   ⟹   ENSCLAP00000015657
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554273,201,173 - 3,204,516 (-)Ensembl
RefSeq Acc Id: XM_013515048   ⟹   XP_013370502
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554273,201,173 - 3,204,516 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013370502 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000015657
  ENSCLAP00000015657.1
Reference Protein Sequences
RefSeq Acc Id: XP_013370502   ⟸   XM_013515048
- UniProtKB: A0A8C2VMV6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000015657   ⟸   ENSCLAT00000015819


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000010755 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000015819 ENTREZGENE
  ENSCLAT00000015819.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.170.20 UniProtKB/TrEMBL
  6.10.250.1270 UniProtKB/TrEMBL
InterPro L24e/L24_sf UniProtKB/TrEMBL
  Ribosomal_L24e-rel UniProtKB/TrEMBL
NCBI Gene LOC102004300 ENTREZGENE
PANTHER PTHR10792 UniProtKB/TrEMBL
  TRASH DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam Ribosomal_L24e UniProtKB/TrEMBL
UniProt A0A8C2VMV6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Rpl24  ribosomal protein L24  LOC102004300  uncharacterized LOC102004300  Symbol and/or name change 5135510 APPROVED