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Gene: Fam170b (family with sequence similarity 170, member B) Mus musculus

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Symbol:

Fam170b

Name:

family with sequence similarity 170, member B

RGD ID:

1622167

MGI Page

MGI

Description:

Involved in positive regulation of acrosome reaction and regulation of fertilization. Located in outer acrosomal membrane. Orthologous to human FAM170B (family with sequence similarity 170 member B).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

4922501K12Rik; AI449756; hypothetical protein LOC105511; putative protein FAM170B; uncharacterized protein LOC105511

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	32,555,938 - 32,558,746 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	32,555,919 - 32,558,746 (+)	Ensembl		GRCm39 Ensembl
GRCm38	14	32,833,962 - 32,836,789 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	32,833,962 - 32,836,789 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	33,647,148 - 33,649,975 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	31,663,413 - 31,665,881 (+)	NCBI		MGSCv36	mm8
Celera	14	29,091,197 - 29,094,024 (+)	NCBI		Celera
Cytogenetic Map	14	B	NCBI
cM Map	14	19.4	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Fam170b	Mouse	Cockayne syndrome B		ISO	FAM170B (Homo sapiens)	8554872	ClinVar Annotator: match by term: Cockayne Syndrome and Type II	ClinVar	PMID:25741868 and PMID:38177409
Fam170b	Mouse	megacolon		ISO	FAM170B (Homo sapiens)	8554872	ClinVar Annotator: match by term: Megacolon	ClinVar	PMID:21681106
Fam170b	Mouse	schizophrenia		ISO	FAM170B (Homo sapiens)	8554872	ClinVar Annotator: match by term: Schizophrenia	ClinVar	PMID:21681106 and PMID:30208311

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Fam170b	Mouse	3-chloropropane-1,2-diol	decreases expression	ISO	Fam170b (Rattus norvegicus)	6480464	alpha-Chlorohydrin results in decreased expression of FAM170B mRNA	CTD	PMID:28522335
Fam170b	Mouse	aflatoxin B1	increases methylation	ISO	FAM170B (Homo sapiens)	6480464	Aflatoxin B1 results in increased methylation of FAM170B gene	CTD	PMID:27153756
Fam170b	Mouse	benzo[a]pyrene	affects methylation	ISO	FAM170B (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of FAM170B 3' UTR	CTD	PMID:27901495
Fam170b	Mouse	benzo[a]pyrene	increases methylation	ISO	FAM170B (Homo sapiens)	6480464	Benzo(a)pyrene results in increased methylation of FAM170B exon	CTD	PMID:27901495
Fam170b	Mouse	bisphenol A	decreases methylation	ISO	FAM170B (Homo sapiens)	6480464	bisphenol A results in decreased methylation of FAM170B gene	CTD	PMID:31601247
Fam170b	Mouse	carbon nanotube	decreases expression	EXP		6480464	Nanotubes and Carbon results in decreased expression of FAM170B mRNA	CTD	PMID:25554681
Fam170b	Mouse	formaldehyde	decreases expression	ISO	FAM170B (Homo sapiens)	6480464	Formaldehyde results in decreased expression of FAM170B mRNA	CTD	PMID:27905399
Fam170b	Mouse	resveratrol	multiple interactions	ISO	FAM170B (Homo sapiens)	6480464	[Plant Extracts co-treated with Resveratrol] results in decreased expression of FAM170B mRNA	CTD	PMID:23557933
Fam170b	Mouse	sodium fluoride	increases expression	EXP		6480464	Sodium Fluoride results in increased expression of FAM170B protein	CTD	PMID:28918527
Fam170b	Mouse	titanium dioxide	decreases expression	EXP		6480464	titanium dioxide results in decreased expression of FAM170B mRNA	CTD	PMID:29264374
Fam170b	Mouse	trichloroethene	increases expression	ISO	Fam170b (Rattus norvegicus)	6480464	Trichloroethylene results in increased expression of FAM170B mRNA	CTD	PMID:33387578
Fam170b	Mouse	valproic acid	increases methylation	ISO	FAM170B (Homo sapiens)	6480464	Valproic Acid results in increased methylation of FAM170B gene	CTD	PMID:29154799

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Fam170b	Mouse	fertilization	involved_in	IBA	PANTHER:PTN002128019 and MGI:1924175	2290270		GO_Central	GO_REF:0000033
Fam170b	Mouse	positive regulation of acrosome reaction	involved_in	IMP		2290270	PMID:26179146	UniProt	PMID:26179146
Fam170b	Mouse	regulation of fertilization	involved_in	IMP		2290270	PMID:26179146	UniProt	PMID:26179146

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Fam170b	Mouse	acrosomal vesicle	is_active_in	IBA	PANTHER:PTN002128051 more ...	2290270		GO_Central	GO_REF:0000033
Fam170b	Mouse	acrosomal vesicle	located_in	IDA		2290270	PMID:26179146	UniProt	PMID:26179146
Fam170b	Mouse	acrosomal vesicle	located_in	ISO	UniProtKB:A6NMN3	2290270		GO_Central	GO_REF:0000119
Fam170b	Mouse	outer acrosomal membrane	located_in	IDA		2290270	PMID:26179146	CACAO	PMID:26179146

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Fam170b	Mouse	molecular_function	enables	ND		2290270		MGI	GO_REF:0000015
Fam170b	Mouse	protein binding	enables	ISO	UniProtKB:Q9HD26	9068941	PMID:26179146	UniProt	PMID:26179146

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Fam170b	Mouse	decreased litter size		IAGP		5509061		MGI	PMID:32588889
Fam170b	Mouse	reduced male fertility		IAGP		5509061		MGI	PMID:32588889

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:12477932	PMID:15613475	PMID:16141072	PMID:16141073	PMID:21267068	PMID:21873635	PMID:26179146
PMID:32588889	PMID:38250762

Fam170b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	32,555,938 - 32,558,746 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	32,555,919 - 32,558,746 (+)	Ensembl		GRCm39 Ensembl
GRCm38	14	32,833,962 - 32,836,789 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	32,833,962 - 32,836,789 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	33,647,148 - 33,649,975 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	31,663,413 - 31,665,881 (+)	NCBI		MGSCv36	mm8
Celera	14	29,091,197 - 29,094,024 (+)	NCBI		Celera
Cytogenetic Map	14	B	NCBI
cM Map	14	19.4	NCBI

FAM170B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	49,131,154 - 49,134,021 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	49,131,154 - 49,134,021 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	50,339,199 - 50,342,066 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	50,009,205 - 50,012,083 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	10	43,924,786 - 43,927,652 (-)	NCBI		Celera
Cytogenetic Map	10	q11.23	NCBI
HuRef	10	44,603,939 - 44,606,805 (-)	NCBI		HuRef
CHM1_1	10	50,621,005 - 50,623,871 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	49,980,036 - 49,982,902 (-)	NCBI		T2T-CHM13v2.0

Fam170b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	8,108,210 - 8,111,020 (+)	NCBI		GRCr8
mRatBN7.2	16	8,101,914 - 8,104,724 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	8,101,914 - 8,104,705 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	8,120,706 - 8,123,516 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	9,265,605 - 9,268,415 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	8,113,290 - 8,116,100 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	9,074,044 - 9,076,885 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	9,074,033 - 9,076,865 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	11,038,456 - 11,041,249 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	8,359,344 - 8,361,599 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	16	7,100,834 - 7,103,682 (-)	NCBI		Celera
Cytogenetic Map	16	p16	NCBI

Fam170b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955556	1,072,692 - 1,077,761 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955556	1,072,826 - 1,075,332 (+)	NCBI	ChiLan1.0	ChiLan1.0

FAM170B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	61,398,023 - 61,400,890 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	61,403,342 - 61,406,209 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	45,110,158 - 45,113,019 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

FAM170B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	1,046,362 - 1,059,992 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	1,275,335 - 1,288,740 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	1,222,515 - 1,235,927 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	28	1,020,871 - 1,034,297 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	28	1,064,692 - 1,078,076 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	28	1,187,756 - 1,201,172 (-)	NCBI		UU_Cfam_GSD_1.0

Fam170b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	79,930,591 - 79,933,421 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936728	1,133,569 - 1,135,787 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936728	1,133,569 - 1,135,742 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FAM170B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	89,752,705 - 89,755,121 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	89,752,340 - 89,754,922 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	97,546,814 - 97,549,782 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FAM170B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	42,667,503 - 42,671,443 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	42,668,682 - 42,670,983 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	2,429,382 - 2,432,251 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fam170b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624928	821,167 - 823,610 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Fam170b
75 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	194
Count of miRNA genes:	168
Interacting mature miRNAs:	182
Transcripts:	ENSMUST00000104926
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1357589	Kdnw2_m	kidney weight 2 (mouse)			Not determined		14	20887473	121269804	Mouse
27226748	Femd8_m	femur midshaft diameter 8, 10 week (mouse)					14	13769273	46737457	Mouse
1357527	Epfpq1_m	epididymal fat percentage QTL 1 (mouse)			Not determined		14	21062450	71885801	Mouse
27226744	Metcl6_m	metatarsal-calcaneal length 6, 5 week (mouse)					14	30321957	52937457	Mouse
27226775	Tibl7_m	tibia length 7, 5 week (mouse)					14	30321957	48837457	Mouse
27226774	Tibl15_m	tibia length 15, 10 week (mouse)					14	30321957	87937436	Mouse
4142485	Modor2_m	modifier of ocular retardation 2 (mouse)			Not determined		14	24926248	58179769	Mouse
1301372	Sluc13_m	susceptibility to lung cancer 13 (mouse)			Not determined		14	18827604	52827726	Mouse
4141550	Dbm3_m	diabetes modifier 3 (mouse)			Not determined			5143473	39143596	Mouse
1300544	Hypn_m	hyperinsulinemia (mouse)			Not determined		14	15160616	49160765	Mouse
1301991	Wta3_m	weight adult 3 (mouse)			Not determined		14	3887473	37887650	Mouse
1300998	Cia17_m	collagen induced arthritis 17 (mouse)			Not determined		14	30335250	64335381	Mouse
4141864	Mrdq4_m	modifier of retinal degeneration QTL 4 (mouse)			Not determined			9923245	48765082	Mouse
10043886	Cia49_m	collagen induced arthritis QTL 49 (mouse)			Not determined		14	29996994	63997133	Mouse
1300779	Dyscalc4_m	dystrophic cardiac calcinosis 4 (mouse)			Not determined		14	12212871	46213007	Mouse
14746973	Manh76_m	mandible shape 76 (mouse)					14	22287217	56287217	Mouse
1300909	Ath13_m	atherosclerosis 13 (mouse)			Not determined		14	30335250	64335381	Mouse
27226752	Femd4_m	femur midshaft diameter 4, 5 week (mouse)					14	13769273	47237457	Mouse
13506929	Recrq10_m	recombination rate in male meiosis QTL 10 (mouse)					14	27921957	61137449	Mouse

AI449756

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	14	32,836,544 - 32,836,651	UniSTS	GRCm38
MGSCv37	14	33,649,730 - 33,649,837	UniSTS	GRCm37
Celera	14	29,093,779 - 29,093,886	UniSTS
Cytogenetic Map	14	A3	UniSTS
Whitehead/MRC_RH	14	251.35	UniSTS

UniSTS:487617

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	14	32,835,206 - 32,836,501	UniSTS	GRCm38
MGSCv37	14	33,648,392 - 33,649,687	UniSTS	GRCm37
Celera	14	29,092,441 - 29,093,736	UniSTS
Cytogenetic Map	14	A3	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NM_001164485	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC133585	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK076630	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC117714	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC128503	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC128504	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BX637280	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY104921	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000104926 ⟹ ENSMUSP00000100529

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	32,555,919 - 32,558,746 (+)	Ensembl
GRCm38.p6 Ensembl	14	32,833,962 - 32,836,789 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000227787

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	32,556,278 - 32,558,743 (+)	Ensembl
GRCm38.p6 Ensembl	14	32,834,321 - 32,836,786 (+)	Ensembl

RefSeq Acc Id:

NM_001164485 ⟹ NP_001157957

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	14	32,555,938 - 32,558,746 (+)	NCBI
GRCm38	14	32,833,962 - 32,836,789 (+)	ENTREZGENE
MGSCv37	14	33,647,148 - 33,649,975 (+)	RGD
Celera	14	29,091,197 - 29,094,024 (+)	RGD
cM Map	14		ENTREZGENE

Sequence:

show sequence

AGAATAAAGCCAGGCTCCTAGAGACCATGTGGCCACTCAGGTTGGGGCTGGCTGGAGGGCTTCAGCACAGCCAACCCCAGCTCTCAACGAGATTCTGGGTGCCGGTTTGAAGTCATGAAACACCATCT
CATTGAGCATAGGGGAGAACAGACACCTGGGACCGCCGTGGGCATGGCCAGCCCAGACGCCGCAGAGGAGAGCACAGGAGTGTGCTGGCCAGGTGGGGCCATGAGGAGGAATGAGTCATCTCCGCGGC
CAGGGCCTGCCTTCCTCCCTGACGATGACATCTACTTGGCAGCCCGGGCACAGGGGGTGCTGGGTTGGAGCAGCTCTCCATCATCCCAGTCGTCCTCCGAGTATCAGTCCTACTCTCAGTACCAGTCC
TGGGACTCCAGCAAATCTGAGGAGCAGCAGGAGACTCCACCTGAGAGCGTGTGCGCCCTGTATACCCACGTGCAGACTGTGCGCGGCGTGGCAGTGGCTTGGGAGACTGATGATGGCTTTGAGCCAGT
CACCAGGAAGCCCCTTATCCGGGAGGCTGAGTTCATCAAGCGTCAGCGGCGGAAAGGCTCCTCCTTTGAGATGGCCTCCAACACAGACCTGCGCTGGGAGCTGGAAGACTGCAAGCACTACTGCCCGC
AGACTGAGGACCCTGTGGACTGCTGCATGCAGGAGCTACGAGCACCACCAGACTGGCTGGTCACCACCAACCATGGCTTGCGCTGTGTGGCCTGCTGCAGAGTCTTCCCTACGCTGGAGGCTCTGCTG
GACCACGCCCAGCATGGCATCCAAGATGGCTTCAGCTGCCAAATATTCTTCGAGGAGATGCTGGAAAGGAAGCGGACCCGGGATCAAAAGCAGGACCAACAGCCTGTAGAAGAGGAGCAGAGCCTTTC
GGACAGTAGTGAATGTACCAGGCTCCTAACCAAGGTGCTTCCCTGGCAGCAGCAGCCGCAGCAGCAGCCGCAGGAGCAACAGAAGCAGCAGCAGCAGCAACAGCAGAAGCAGCGGCAGCAGGAGCAGC
AGCAACATCAACAGCAGCAGCAGCAGCCGCAGCCACTGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCATTGCAGCCGCAGCCACTGAAGCAGCAGCCGTTGCAGCCGTTGCAGCCGCAGCCGCAG
CCACAGCCACAGAAGCAGCAGCAAAGGCAGCAGCAGAGGCAGCAGCAGCCACCGCGACAGCAGCAGAAACAACAGCCACTGCAGCAACAGGGAAAGTAGAGATCGGAGGTGAGCTGCCCACCCTCCCT
CCAGCATTTTGAATTGCTGCTCCTTTTCCAGCCAGCCGAACCAGAGCCACCAGAGCAGGGGGAGAGGACCAGGGTGATGGGGAGAAGAGCCATCCATGTGGCTGTGGAGCAGCAAAGGTGGGAGGAAT
GGGAACCTTTCCCCAAGGCGGAGTCCATTTCAAAACCGGAATCCAAAGAAGAGGGCTTCAAGAGTTCTTGATGGTGGATGCAAGATGGGAAACAAGCAAGCATGTGGCCACAGGGATTTCTATTTTTT
GCGGAAGGATCAGCAGTAGTCCACACTTGCTATCCAAGTACATGTGACTCACAGGCAAGCCAACTGCAAATGAAGCTTCAGCCCTATTTTTTTCATTGTTAGGAATCTGTCATATGCCCTAATTCTAT
GTTGTTGGGATTAAACTTGAATAAGCCAAA

hide sequence


Protein RefSeqs	NP_001157957	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI17715	(Get FASTA)	NCBI Sequence Viewer
	AAI28504	(Get FASTA)	NCBI Sequence Viewer
	AAI28505	(Get FASTA)	NCBI Sequence Viewer
	E9PXT9	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000100529
	ENSMUSP00000100529.3

RefSeq Acc Id:

NP_001157957 ⟸ NM_001164485

- UniProtKB:

E9PXT9 (UniProtKB/TrEMBL), Q08ED8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MKHHLIEHRGEQTPGTAVGMASPDAAEESTGVCWPGGAMRRNESSPRPGPAFLPDDDIYLAARAQGVLGWSSSPSSQSSSEYQSYSQYQSWDSSKSEEQQETPPESVCALYTHVQTVRGVAVAWETDD
GFEPVTRKPLIREAEFIKRQRRKGSSFEMASNTDLRWELEDCKHYCPQTEDPVDCCMQELRAPPDWLVTTNHGLRCVACCRVFPTLEALLDHAQHGIQDGFSCQIFFEEMLERKRTRDQKQDQQPVEE
EQSLSDSSECTRLLTKVLPWQQQPQQQPQEQQKQQQQQQQKQRQQEQQQHQQQQQQPQPLKQQQQQQQQQPLQPQPLKQQPLQPLQPQPQPQPQKQQQRQQQRQQQPPRQQQKQQPLQQQGK

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Ensembl Acc Id:

ENSMUSP00000100529 ⟸ ENSMUST00000104926

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-E9PXT9-F1-model_v2	AlphaFold	E9PXT9	1-378	view protein structure

RGD ID:

8681884

Promoter ID:

EPDNEW_M18973

Type:

initiation region

Name:

Fam170b_1

Description:

Mus musculus family with sequence similarity 170, member B ,mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	14	32,833,981 - 32,834,041	EPDNEW

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000078127	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000104926	ENTREZGENE
	ENSMUST00000104926.3	UniProtKB/Swiss-Prot
InterPro	Spt46-like	UniProtKB/Swiss-Prot
KEGG Report	mmu:105511	UniProtKB/Swiss-Prot
MGD	MGI:2145650	ENTREZGENE
NCBI Gene	105511	ENTREZGENE
PANTHER	PTHR33517	UniProtKB/Swiss-Prot
	PTHR33517:SF2	UniProtKB/Swiss-Prot
Pfam	Spt46	UniProtKB/Swiss-Prot
PhenoGen	Fam170b	PhenoGen
UniProt	E9PXT9	ENTREZGENE, UniProtKB/Swiss-Prot
	Q08ED8	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar

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