FAM170B (family with sequence similarity 170 member B) - Rat Genome Database

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Gene: FAM170B (family with sequence similarity 170 member B) Canis lupus familiaris
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Symbol: FAM170B
Name: family with sequence similarity 170 member B
RGD ID: 12283525
Description: INVOLVED IN positive regulation of acrosome reaction (ortholog); regulation of fertilization (ortholog); ASSOCIATED WITH Cockayne syndrome B (ortholog); megacolon (ortholog); schizophrenia (ortholog); FOUND IN acrosomal vesicle (ortholog); outer acrosomal membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1281,046,362 - 1,059,992 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha281,275,335 - 1,288,740 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0281,222,515 - 1,235,927 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1281,020,871 - 1,034,297 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0281,064,692 - 1,078,076 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0281,187,756 - 1,201,172 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
FAM170B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1281,046,362 - 1,059,992 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha281,275,335 - 1,288,740 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0281,222,515 - 1,235,927 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1281,020,871 - 1,034,297 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0281,064,692 - 1,078,076 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0281,187,756 - 1,201,172 (-)NCBIUU_Cfam_GSD_1.0
FAM170B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381049,131,154 - 49,134,021 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1049,131,154 - 49,134,021 (-)EnsemblGRCh38hg38GRCh38
GRCh371050,339,199 - 50,342,066 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361050,009,205 - 50,012,083 (-)NCBINCBI36Build 36hg18NCBI36
Celera1043,924,786 - 43,927,652 (-)NCBICelera
Cytogenetic Map10q11.23NCBI
HuRef1044,603,939 - 44,606,805 (-)NCBIHuRef
CHM1_11050,621,005 - 50,623,871 (-)NCBICHM1_1
T2T-CHM13v2.01049,980,036 - 49,982,902 (-)NCBIT2T-CHM13v2.0
Fam170b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391432,555,938 - 32,558,746 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1432,555,919 - 32,558,746 (+)EnsemblGRCm39 Ensembl
GRCm381432,833,962 - 32,836,789 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1432,833,962 - 32,836,789 (+)EnsemblGRCm38mm10GRCm38
MGSCv371433,647,148 - 33,649,975 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361431,663,413 - 31,665,881 (+)NCBIMGSCv36mm8
Celera1429,091,197 - 29,094,024 (+)NCBICelera
Cytogenetic Map14BNCBI
cM Map1419.4NCBI
Fam170b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8168,108,210 - 8,111,020 (+)NCBIGRCr8
mRatBN7.2168,101,914 - 8,104,724 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl168,101,914 - 8,104,705 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx168,120,706 - 8,123,516 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0169,265,605 - 9,268,415 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0168,113,290 - 8,116,100 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0169,074,044 - 9,076,885 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl169,074,033 - 9,076,865 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01611,038,456 - 11,041,249 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4168,359,344 - 8,361,599 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera167,100,834 - 7,103,682 (-)NCBICelera
Cytogenetic Map16p16NCBI
Fam170b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555561,072,692 - 1,077,761 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555561,072,826 - 1,075,332 (+)NCBIChiLan1.0ChiLan1.0
FAM170B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2861,398,023 - 61,400,890 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11061,403,342 - 61,406,209 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01045,110,158 - 45,113,019 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
Fam170b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721379,930,591 - 79,933,421 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367281,133,569 - 1,135,787 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367281,133,569 - 1,135,742 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM170B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1489,752,705 - 89,755,121 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11489,752,340 - 89,754,922 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21497,546,814 - 97,549,782 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAM170B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1942,667,503 - 42,671,443 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl942,668,682 - 42,670,983 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660482,429,382 - 2,432,251 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam170b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624928821,167 - 823,610 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FAM170B
163 total Variants

Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_014108771   ⟹   XP_013964246
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1281,046,362 - 1,059,992 (-)NCBI
Dog10K_Boxer_Tasha281,275,335 - 1,288,740 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038439702   ⟹   XP_038295630
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0281,222,515 - 1,235,927 (-)NCBI
RefSeq Acc Id: XM_038515681   ⟹   XP_038371609
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1281,020,871 - 1,034,297 (-)NCBI
RefSeq Acc Id: XM_038579221   ⟹   XP_038435149
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0281,187,756 - 1,201,172 (-)NCBI
RefSeq Acc Id: XM_038643461   ⟹   XP_038499389
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0281,064,692 - 1,078,076 (-)NCBI
RefSeq Acc Id: XP_013964246   ⟸   XM_014108771
- Sequence:
RefSeq Acc Id: XP_038371609   ⟸   XM_038515681
RefSeq Acc Id: XP_038499389   ⟸   XM_038643461
RefSeq Acc Id: XP_038295630   ⟸   XM_038439702
RefSeq Acc Id: XP_038435149   ⟸   XM_038579221


Additional Information

Database Acc Id Source(s)
NCBI Gene FAM170B ENTREZGENE