Fam170b (family with sequence similarity 170 member B) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Fam170b (family with sequence similarity 170 member B) Ictidomys tridecemlineatus
Analyze
Symbol: Fam170b
Name: family with sequence similarity 170 member B
RGD ID: 12615621
Description: INVOLVED IN positive regulation of acrosome reaction (ortholog); regulation of fertilization (ortholog); ASSOCIATED WITH Cockayne syndrome B (ortholog); megacolon (ortholog); schizophrenia (ortholog); FOUND IN outer acrosomal membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: putative protein FAM170B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721379,930,591 - 79,933,421 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367281,133,569 - 1,135,787 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367281,133,569 - 1,135,742 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Fam170b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721379,930,591 - 79,933,421 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367281,133,569 - 1,135,787 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367281,133,569 - 1,135,742 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM170B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381049,131,154 - 49,134,021 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1049,131,154 - 49,134,021 (-)EnsemblGRCh38hg38GRCh38
GRCh371050,339,199 - 50,342,066 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361050,009,205 - 50,012,083 (-)NCBINCBI36Build 36hg18NCBI36
Celera1043,924,786 - 43,927,652 (-)NCBICelera
Cytogenetic Map10q11.23NCBI
HuRef1044,603,939 - 44,606,805 (-)NCBIHuRef
CHM1_11050,621,005 - 50,623,871 (-)NCBICHM1_1
T2T-CHM13v2.01049,980,036 - 49,982,902 (-)NCBIT2T-CHM13v2.0
Fam170b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391432,555,938 - 32,558,746 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1432,555,919 - 32,558,746 (+)EnsemblGRCm39 Ensembl
GRCm381432,833,962 - 32,836,789 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1432,833,962 - 32,836,789 (+)EnsemblGRCm38mm10GRCm38
MGSCv371433,647,148 - 33,649,975 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361431,663,413 - 31,665,881 (+)NCBIMGSCv36mm8
Celera1429,091,197 - 29,094,024 (+)NCBICelera
Cytogenetic Map14BNCBI
cM Map1419.4NCBI
Fam170b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8168,108,210 - 8,111,020 (+)NCBIGRCr8
mRatBN7.2168,101,914 - 8,104,724 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl168,101,914 - 8,104,705 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx168,120,706 - 8,123,516 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0169,265,605 - 9,268,415 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0168,113,290 - 8,116,100 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0169,074,044 - 9,076,885 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl169,074,033 - 9,076,865 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01611,038,456 - 11,041,249 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4168,359,344 - 8,361,599 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera167,100,834 - 7,103,682 (-)NCBICelera
Cytogenetic Map16p16NCBI
Fam170b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555561,072,692 - 1,077,761 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555561,072,826 - 1,075,332 (+)NCBIChiLan1.0ChiLan1.0
FAM170B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2861,398,023 - 61,400,890 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11061,403,342 - 61,406,209 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01045,110,158 - 45,113,019 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
FAM170B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1281,046,362 - 1,059,992 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha281,275,335 - 1,288,740 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0281,222,515 - 1,235,927 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1281,020,871 - 1,034,297 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0281,064,692 - 1,078,076 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0281,187,756 - 1,201,172 (-)NCBIUU_Cfam_GSD_1.0
FAM170B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1489,752,705 - 89,755,121 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11489,752,340 - 89,754,922 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21497,546,814 - 97,549,782 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAM170B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1942,667,503 - 42,671,443 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl942,668,682 - 42,670,983 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660482,429,382 - 2,432,251 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam170b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624928821,167 - 823,610 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005339082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010002273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000010491   ⟹   ENSSTOP00000009415
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367281,133,569 - 1,135,787 (+)Ensembl
RefSeq Acc Id: XM_005339082   ⟹   XP_005339139
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721379,930,591 - 79,933,421 (+)NCBI
SpeTri2.0NW_0049367281,133,569 - 1,135,742 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005339139 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000009415.3
GenBank Protein KAG3264977 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005339139   ⟸   XM_005339082
- UniProtKB: I3MFL0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000009415   ⟸   ENSSTOT00000010491


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000010499 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000010491.3 UniProtKB/TrEMBL
InterPro Spt46-like UniProtKB/TrEMBL
NCBI Gene Fam170b ENTREZGENE
PANTHER PTHR33517 UniProtKB/TrEMBL
  PTHR33517:SF2 UniProtKB/TrEMBL
Pfam Spt46 UniProtKB/TrEMBL
UniProt I3MFL0 ENTREZGENE, UniProtKB/TrEMBL