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Gene: Ap5s1 (adaptor-related protein 5 complex, sigma 1 subunit) Mus musculus

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Symbol:

Ap5s1

Name:

adaptor-related protein 5 complex, sigma 1 subunit

RGD ID:

1619148

MGI Page

MGI

Description:

Predicted to be involved in double-strand break repair via homologous recombination and endosomal transport. Predicted to be located in nucleoplasm. Predicted to be part of AP-type membrane coat adaptor complex. Predicted to be active in cytosol; late endosome; and lysosome. Orthologous to human AP5S1 (adaptor related protein complex 5 subunit sigma 1).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

0610038L13Rik; 2310035K24Rik; adapter-related protein complex 5 sigma subunit; adaptor-related protein complex 5 sigma subunit; AP-5 complex subunit sigma-1; AW060727; hypothetical protein LOC69596; protein C20orf29 homolog; RP23-387C21.2; sigma5

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	131,052,280 - 131,055,434 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	131,048,998 - 131,055,434 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	131,210,360 - 131,213,514 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	131,207,078 - 131,213,514 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	131,036,176 - 131,039,250 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	130,901,881 - 130,904,955 (+)	NCBI		MGSCv36	mm8
Celera	2	132,436,277 - 132,439,341 (+)	NCBI		Celera
Cytogenetic Map	2	F1	NCBI
cM Map	2	63.29	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ap5s1	Mouse	Huntington's disease-like 1		ISO	AP5S1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Huntington disease-like 1	ClinVar	PMID:28492532
Ap5s1	Mouse	Inosine Triphosphatase Deficiency		ISO	AP5S1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Inosine triphosphatase deficiency	ClinVar	PMID:26224535 more ...
Ap5s1	Mouse	pantothenate kinase-associated neurodegeneration		ISO	AP5S1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Pigmentary pallidal degeneration	ClinVar	PMID:28492532

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ap5s1	Mouse	(-)-epigallocatechin 3-gallate	multiple interactions	ISO	AP5S1 (Homo sapiens)	6480464	[potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of AP5S1 mRNA	CTD	PMID:22079256
Ap5s1	Mouse	2,3,7,8-tetrachlorodibenzodioxine	increases expression	ISO	Ap5s1 (Rattus norvegicus)	6480464	Tetrachlorodibenzodioxin results in increased expression of AP5S1 mRNA	CTD	PMID:32109520
Ap5s1	Mouse	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	ISO	Ap5s1 (Rattus norvegicus)	6480464	Tetrachlorodibenzodioxin results in decreased expression of AP5S1 mRNA	CTD	PMID:33387578
Ap5s1	Mouse	2-deoxy-D-glucose	increases expression	ISO	AP5S1 (Homo sapiens)	6480464	Deoxyglucose results in increased expression of AP5S1 mRNA	CTD	PMID:33770205
Ap5s1	Mouse	3-chloropropane-1,2-diol	increases expression	ISO	Ap5s1 (Rattus norvegicus)	6480464	alpha-Chlorohydrin results in increased expression of AP5S1 protein	CTD	PMID:34915118
Ap5s1	Mouse	all-trans-retinoic acid	multiple interactions	EXP		6480464	[bisphenol F co-treated with Tretinoin] results in decreased expression of AP5S1 mRNA	CTD	PMID:30951980
Ap5s1	Mouse	benzo[a]pyrene	increases methylation	ISO	AP5S1 (Homo sapiens)	6480464	Benzo(a)pyrene results in increased methylation of AP5S1 promoter	CTD	PMID:27901495
Ap5s1	Mouse	bisphenol A	decreases expression	ISO	Ap5s1 (Rattus norvegicus)	6480464	bisphenol A results in decreased expression of AP5S1 mRNA	CTD	PMID:30816183 and PMID:34947998
Ap5s1	Mouse	bisphenol A	increases methylation	EXP		6480464	bisphenol A results in increased methylation of AP5S1 promoter	CTD	PMID:27312807
Ap5s1	Mouse	bisphenol F	multiple interactions	EXP		6480464	[bisphenol F co-treated with Tretinoin] results in decreased expression of AP5S1 mRNA	CTD	PMID:30951980
Ap5s1	Mouse	chlorpyrifos	increases expression	EXP		6480464	Chlorpyrifos results in increased expression of AP5S1 mRNA	CTD	PMID:37019170
Ap5s1	Mouse	chromium(6+)	multiple interactions	ISO	AP5S1 (Homo sapiens)	6480464	[zinc chromate results in increased abundance of chromium hexavalent ion] which results in decreased expression of AP5S1 mRNA	CTD	PMID:38479592
Ap5s1	Mouse	clofibrate	decreases expression	EXP		6480464	Clofibrate results in decreased expression of AP5S1 mRNA	CTD	PMID:23811191
Ap5s1	Mouse	copper(II) sulfate	decreases expression	ISO	AP5S1 (Homo sapiens)	6480464	Copper Sulfate results in decreased expression of AP5S1 mRNA	CTD	PMID:19549813
Ap5s1	Mouse	Cuprizon	increases expression	ISO	Ap5s1 (Rattus norvegicus)	6480464	Cuprizone results in increased expression of AP5S1 mRNA	CTD	PMID:26577399
Ap5s1	Mouse	Dibutyl phosphate	affects expression	ISO	AP5S1 (Homo sapiens)	6480464	di-n-butylphosphoric acid affects the expression of AP5S1 mRNA	CTD	PMID:37042841
Ap5s1	Mouse	leflunomide	decreases expression	ISO	AP5S1 (Homo sapiens)	6480464	leflunomide results in decreased expression of AP5S1 mRNA	CTD	PMID:28988120
Ap5s1	Mouse	methotrexate	increases expression	ISO	AP5S1 (Homo sapiens)	6480464	Methotrexate results in increased expression of AP5S1 mRNA	CTD	PMID:33770205
Ap5s1	Mouse	N-methyl-4-phenylpyridinium	increases expression	ISO	Ap5s1 (Rattus norvegicus)	6480464	1-Methyl-4-phenylpyridinium results in increased expression of AP5S1 mRNA	CTD	PMID:28801915
Ap5s1	Mouse	nickel atom	increases expression	ISO	AP5S1 (Homo sapiens)	6480464	Nickel results in increased expression of AP5S1 mRNA	CTD	PMID:25583101
Ap5s1	Mouse	panobinostat	decreases expression	ISO	AP5S1 (Homo sapiens)	6480464	Panobinostat results in decreased expression of AP5S1 mRNA	CTD	PMID:33770205
Ap5s1	Mouse	paracetamol	decreases expression	ISO	Ap5s1 (Rattus norvegicus)	6480464	Acetaminophen results in decreased expression of AP5S1 mRNA	CTD	PMID:33387578
Ap5s1	Mouse	potassium chromate	multiple interactions	ISO	AP5S1 (Homo sapiens)	6480464	[potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of AP5S1 mRNA	CTD	PMID:22079256
Ap5s1	Mouse	potassium chromate	decreases expression	ISO	AP5S1 (Homo sapiens)	6480464	potassium chromate(VI) results in decreased expression of AP5S1 mRNA	CTD	PMID:22079256
Ap5s1	Mouse	sodium arsenite	decreases expression	ISO	AP5S1 (Homo sapiens)	6480464	sodium arsenite results in decreased expression of AP5S1 mRNA	CTD	PMID:38568856
Ap5s1	Mouse	temozolomide	increases expression	ISO	AP5S1 (Homo sapiens)	6480464	Temozolomide results in increased expression of AP5S1 mRNA	CTD	PMID:31758290
Ap5s1	Mouse	tetraphene	increases expression	EXP		6480464	benz(a)anthracene results in increased expression of AP5S1 mRNA	CTD	PMID:26377693
Ap5s1	Mouse	thiram	decreases expression	ISO	AP5S1 (Homo sapiens)	6480464	Thiram results in decreased expression of AP5S1 mRNA	CTD	PMID:38568856
Ap5s1	Mouse	trichostatin A	decreases expression	ISO	AP5S1 (Homo sapiens)	6480464	trichostatin A results in decreased expression of AP5S1 mRNA	CTD	PMID:33770205
Ap5s1	Mouse	trichostatin A	affects expression	ISO	AP5S1 (Homo sapiens)	6480464	trichostatin A affects the expression of AP5S1 mRNA	CTD	PMID:28542535
Ap5s1	Mouse	triptonide	increases expression	EXP		6480464	triptonide results in increased expression of AP5S1 mRNA	CTD	PMID:33045310
Ap5s1	Mouse	troglitazone	increases expression	EXP		6480464	troglitazone results in increased expression of AP5S1 mRNA	CTD	PMID:28973697
Ap5s1	Mouse	tunicamycin	increases expression	ISO	AP5S1 (Homo sapiens)	6480464	Tunicamycin results in increased expression of AP5S1 mRNA	CTD	PMID:33770205
Ap5s1	Mouse	valproic acid	affects expression	ISO	AP5S1 (Homo sapiens)	6480464	Valproic Acid affects the expression of AP5S1 mRNA	CTD	PMID:25979313
Ap5s1	Mouse	valproic acid	increases expression	ISO	AP5S1 (Homo sapiens)	6480464	Valproic Acid results in increased expression of AP5S1 mRNA	CTD	PMID:28001369
Ap5s1	Mouse	valproic acid	decreases expression	ISO	AP5S1 (Homo sapiens)	6480464	Valproic Acid results in decreased expression of AP5S1 mRNA	CTD	PMID:29154799
Ap5s1	Mouse	vorinostat	decreases expression	ISO	AP5S1 (Homo sapiens)	6480464	Vorinostat results in decreased expression of AP5S1 mRNA	CTD	PMID:33770205

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ap5s1	Mouse	double-strand break repair via homologous recombination	involved_in	ISO	UniProtKB:Q9NUS5	2290270		GO_Central	GO_REF:0000119
Ap5s1	Mouse	double-strand break repair via homologous recombination	involved_in	ISS	UniProtKB:Q9NUS5	2290270		UniProt	GO_REF:0000024
Ap5s1	Mouse	endosomal transport	involved_in	IBA	PANTHER:PTN000413531 and UniProtKB:Q9NUS5	2290270		GO_Central	GO_REF:0000033
Ap5s1	Mouse	endosomal transport	involved_in	ISS	UniProtKB:Q9NUS5	2290270		UniProt	GO_REF:0000024
Ap5s1	Mouse	endosomal transport	involved_in	ISO	UniProtKB:Q9NUS5	2290270		GO_Central	GO_REF:0000119
Ap5s1	Mouse	protein transport	involved_in	IEA	UniProtKB-KW:KW-0653	2290270		UniProt	GO_REF:0000043
Ap5s1	Mouse	vesicle-mediated transport	involved_in	NAS		2290270	PMID:22022230	ComplexPortal	PMID:22022230

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ap5s1	Mouse	AP-5 adaptor complex	part_of	NAS		2290270	PMID:22022230	ComplexPortal	PMID:22022230
Ap5s1	Mouse	AP-type membrane coat adaptor complex	part_of	ISO	UniProtKB:Q9NUS5	2290270		GO_Central	GO_REF:0000119
Ap5s1	Mouse	AP-type membrane coat adaptor complex	part_of	IBA	PANTHER:PTN000413531 and UniProtKB:Q9NUS5	2290270		GO_Central	GO_REF:0000033
Ap5s1	Mouse	AP-type membrane coat adaptor complex	part_of	ISS	UniProtKB:Q9NUS5	2290270		UniProt	GO_REF:0000024
Ap5s1	Mouse	cytosol	located_in	IEA	UniProtKB-SubCell:SL-0091	2290270		UniProt	GO_REF:0000044
Ap5s1	Mouse	cytosol	is_active_in	IBA	PANTHER:PTN000413531 and UniProtKB:Q9NUS5	2290270		GO_Central	GO_REF:0000033
Ap5s1	Mouse	cytosol	located_in	ISO	UniProtKB:Q9NUS5	2290270		GO_Central	GO_REF:0000119
Ap5s1	Mouse	late endosome	located_in	ISS	UniProtKB:Q9NUS5	2290270		UniProt	GO_REF:0000024
Ap5s1	Mouse	late endosome	located_in	ISO	UniProtKB:Q9NUS5	2290270		GO_Central	GO_REF:0000119
Ap5s1	Mouse	late endosome	is_active_in	IBA	PANTHER:PTN000413531 and UniProtKB:Q9NUS5	2290270		GO_Central	GO_REF:0000033
Ap5s1	Mouse	late endosome	located_in	NAS		2290270	PMID:22022230	ComplexPortal	PMID:22022230
Ap5s1	Mouse	late endosome membrane	located_in	IEA	UniProtKB-SubCell:SL-0151	2290270		UniProt	GO_REF:0000044
Ap5s1	Mouse	lysosomal membrane	located_in	IEA	UniProtKB-SubCell:SL-0157	2290270		UniProt	GO_REF:0000044
Ap5s1	Mouse	lysosome	located_in	ISO	UniProtKB:Q9NUS5	2290270		GO_Central	GO_REF:0000119
Ap5s1	Mouse	lysosome	is_active_in	IBA	PANTHER:PTN000413531 and UniProtKB:Q9NUS5	2290270		GO_Central	GO_REF:0000033
Ap5s1	Mouse	lysosome	located_in	ISS	UniProtKB:Q9NUS5	2290270		UniProt	GO_REF:0000024
Ap5s1	Mouse	nucleoplasm	located_in	ISO	UniProtKB:Q9NUS5	2290270		GO_Central	GO_REF:0000119

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ap5s1	Mouse	molecular_function	enables	ND		2290270		MGI	GO_REF:0000015
Ap5s1	Mouse	protein binding	enables	ISO	UniProtKB:O43299 more ...	9068941	PMID:20613862	UniProt	PMID:20613862

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ap5s1	Mouse	increased grip strength		IEA		5509061		MGI

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:8889548	PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:11752298	PMID:12466851	PMID:12477932	PMID:16141072	PMID:16141073	PMID:16602821	PMID:18799693
PMID:21267068	PMID:21873635	PMID:22022230

Ap5s1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	131,052,280 - 131,055,434 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	131,048,998 - 131,055,434 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	131,210,360 - 131,213,514 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	131,207,078 - 131,213,514 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	131,036,176 - 131,039,250 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	130,901,881 - 130,904,955 (+)	NCBI		MGSCv36	mm8
Celera	2	132,436,277 - 132,439,341 (+)	NCBI		Celera
Cytogenetic Map	2	F1	NCBI
cM Map	2	63.29	NCBI

AP5S1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	3,820,547 - 3,828,838 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	3,811,384 - 3,828,838 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	3,801,194 - 3,809,485 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	3,749,203 - 3,753,954 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	20	3,749,202 - 3,753,954	NCBI
Celera	20	3,863,077 - 3,867,828 (+)	NCBI		Celera
Cytogenetic Map	20	p13	NCBI
HuRef	20	3,749,721 - 3,754,504 (+)	NCBI		HuRef
CHM1_1	20	3,801,016 - 3,805,802 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	20	3,851,488 - 3,859,779 (+)	NCBI		T2T-CHM13v2.0

Ap5s1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	138,882,634 - 138,885,940 (+)	NCBI		GRCr8
mRatBN7.2	3	118,429,618 - 118,432,929 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	118,429,637 - 118,432,926 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	122,323,931 - 122,327,243 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	130,923,309 - 130,926,616 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	128,580,032 - 128,583,344 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	123,754,035 - 123,757,349 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	123,754,057 - 123,757,359 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	130,251,640 - 130,255,035 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	118,916,234 - 118,919,526 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	117,237,741 - 117,241,033 (+)	NCBI		Celera
Cytogenetic Map	3	q36	NCBI

Ap5s1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	14,664,849 - 14,672,478 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955415	14,665,450 - 14,669,456 (+)	NCBI	ChiLan1.0	ChiLan1.0

AP5S1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	4,785,611 - 4,790,772 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	4,782,442 - 4,796,080 (+)	NCBI		NHGRI_mPanPan1
PanPan1.1 Ensembl	20	3,659,526 - 3,664,347 (+)	Ensembl	panpan1.1		panPan2

AP5S1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	17,537,539 - 17,543,834 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	17,537,544 - 17,543,901 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	17,367,232 - 17,373,467 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	17,956,524 - 17,962,765 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	17,959,357 - 17,961,616 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	17,551,445 - 17,557,683 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	17,662,233 - 17,668,466 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	17,990,130 - 17,996,377 (-)	NCBI		UU_Cfam_GSD_1.0

Ap5s1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	166,447,004 - 166,453,021 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936485	14,877,206 - 14,884,369 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936485	14,880,338 - 14,884,383 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

AP5S1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	31,894,391 - 31,902,166 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	31,896,117 - 31,906,833 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	36,230,496 - 36,236,088 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

AP5S1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	34,494,318 - 34,514,074 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	34,508,315 - 34,514,299 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666071	9,938,385 - 9,956,754 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ap5s1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624741	4,903,492 - 4,910,923 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624741	4,903,219 - 4,930,021 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Ap5s1
185 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	1332
Count of miRNA genes:	512
Interacting mature miRNAs:	604
Transcripts:	ENSMUST00000089506, ENSMUST00000110206, ENSMUST00000110208, ENSMUST00000110210, ENSMUST00000134086, ENSMUST00000143546, ENSMUST00000153097, ENSMUST00000153901
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1301905	Lgth2_m	body length 2 (mouse)			Not determined		2	111173704	145173821	Mouse
1302033	Nsv1_m	Neuroadapted Sindbis viral RNA level 1 (mouse)			Not determined		2	111623386	145623526	Mouse
13824983	Vclq1_m	curvilinear velocity QTL 1 (mouse)					2	61830344	136841920	Mouse
13506763	Tbvq1_m	trabecular bone volume QTL 1 (mouse)					2	126041920	135441920	Mouse
11039520	Ltpr2h_m	Leishmania tropica response 2h (mouse)					2	112212746	146213005	Mouse
11039521	Ltpr2g_m	Leishmania tropica response 2g (mouse)					2	115212857	149212994	Mouse
12910799	Pwgrq2_m	pre-weaning growth rate QTL 2 (mouse)					2	118589253	160611165	Mouse
1302174	Dssc2_m	dextran sodium sulfate induced colitis QTL2 (mouse)			Not determined		2	24224632	148700377	Mouse
12910795	Pwbwq5_m	post-weaning body weight QTL 5 (mouse)					2	118589253	160611165	Mouse
27226761	Feml18_m	femur length 18, 16 week (mouse)					2	94230345	154241920	Mouse
12910812	Pwgrq1_m	pre-weaning growth rate QTL 1 (mouse)					2	118589253	160611165	Mouse
12910814	Pwbwq1_m	pre-weaning body weight QTL 1 (mouse)					2	118589253	160611165	Mouse
4141854	T2dm2sa_m	type 2 diabetes mellitus 2 in SMXA RI mice (mouse)			Not determined		2	29307947	148374934	Mouse
12904935	Edlmmq2_m	extensor digitorum longus muscle mass QTL 2 (mouse)					2	97210364	131210364	Mouse
1302071	Fembrs1_m	femur breaking strength 1 (mouse)			Not determined		2	100942930	134943090	Mouse
10045885	Cplaq15_m	circadian period of locomotor activity 15 (mouse)			Not determined		2	110916118	154354667	Mouse
1302203	Gvhd3_m	graft-versus host disease 3 (mouse)			Not determined		2	100942930	134943090	Mouse
1300793	Pcfm2_m	periosteal circumference and femur length 2 (mouse)			Not determined		2	111173704	145173821	Mouse
10412082	Hylaq1_m	Hyperlocomotor activity related QTL 1 (mouse)			Not determined		2	84013198	148667470	Mouse
1301822	Pgia2_m	proteoglycan induced arthritis 2 (mouse)			Not determined		2	123937311	157937424	Mouse
5491197	Mobq5_m	multigenic obesity QTL 5 (mouse)			Not determined		2	65269746	162518926	Mouse
5491196	Mobq6_m	multigenic obesity QTL 6 (mouse)			Not determined		2	85724269	180896594	Mouse
1301031	Bdln3_m	body length 3 (mouse)			Not determined		2	127664019	161664118	Mouse
1301029	T2dm3_m	type 2 diabetes mellitus 3 (mouse)			Not determined		2	114288075	132714157	Mouse
27226788	Feml13_m	femur length 13, 10 week (mouse)					2	102630345	159941920	Mouse
1301295	Prdt1_m	prion disease incubation time 1 (mouse)			Not determined		2	116077623	150077741	Mouse
1301294	Hrtfm5_m	heart failure modifier 5 (mouse)			Not determined		2	122883015	156883131	Mouse
12904954	Gmmq2_m	gastrocnemius muscle mass QTL 2 (mouse)					2	97210364	131210364	Mouse
11038696	Ltpr2f_m	Leishmania tropica response 2f (mouse)					2	115212857	149212994	Mouse
1301330	Tbbmd2_m	total body bone mineral density 2 (mouse)			Not determined		2	100942930	134943090	Mouse
1301201	Chab1_m	cholesterol absorption 1 (mouse)			Not determined		2	111551028	145551163	Mouse
11038699	Ltpr2b_m	Leishmania tropica response 2b (mouse)					2	112212746	146213005	Mouse
11038700	Ltpr2a_m	Leishmania tropica response 2a (mouse)					2	112212746	146213005	Mouse
11038702	Ltpr2_m	Leishmania tropica response 2 (mouse)					2	103095716	167212356	Mouse
11049568	Lmr28c_m	leishmaniasis resistance 28c (mouse)					2	97123370	131123532	Mouse
11049569	Lmr28d_m	leishmaniasis resistance 28d (mouse)					2	97123370	131123532	Mouse
1301087	Bbaa15_m	B.burgdorferi-associated arthritis 15 (mouse)			Not determined		2	110489658	144489807	Mouse
1301825	Pbrgcsf1_m	peripheral blood stem cell response to granulocyte colony stimulating factor 1 (mouse)			Not determined		2	106233580	140233729	Mouse
4141802	Ignpq1_m	IgA nephropathy QTL 1 (mouse)			Not determined		2	100824060	134824269	Mouse
1558990	Skmw9_m	skeletal muscle weight 9 (mouse)			Not determined		2	111173704	145173821	Mouse
1301066	Otx2m2_m	orthodenticle homolog 2 (Drosophila) modifier 2 (mouse)			Not determined		2	123231973	148700377	Mouse
1558989	Gnf4_m	growth and fatness 4 (mouse)			Not determined		2	128173704	132714157	Mouse
4141155	Plast2b_m	plasma plant sterol 2b (mouse)			Not determined		2	84013198	148522175	Mouse
1301618	Bglu1_m	blood glucose level 1 (mouse)			Not determined		2	117942930	174324863	Mouse
27226749	Femd10_m	femur midshaft diameter 10, 16 week (mouse)					2	124441920	168241920	Mouse
1301755	Hrq1_m	heart rate quantitative locus 1 (mouse)			Not determined		2	111173704	145173821	Mouse
1302143	Bwq5_m	body weight (mouse)			Not determined		2	127664019	161664118	Mouse
12880427	V25Dq3_m	vitamin D inactive form serum level QTL 3 (mouse)					2	129341920	163341920	Mouse
1301344	Lith1_m	lithogenic gene 1 (mouse)			Not determined		2	45347635	145312647	Mouse
1558881	Ses7_m	salmonella enteritidis susceptibility 7 (mouse)			Not determined		2	116306330	150306474	Mouse
10043875	Bw25_m	body weight QTL 25 (mouse)			Not determined		2	107255676	141255676	Mouse
1300712	El2_m	epilepsy 2 (mouse)			Not determined		2	122207146	142532135	Mouse

AW060727

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	2	131,213,404 - 131,213,490	UniSTS	GRCm38
MGSCv37	2	131,039,140 - 131,039,226	UniSTS	GRCm37
Celera	2	132,439,231 - 132,439,317	UniSTS
Cytogenetic Map	2	F3	UniSTS
Whitehead/MRC_RH	2	1635.38	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NM_001291031	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001291032	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001355593	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_027129	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_110992	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AK002807	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK009634	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL808128	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AW060727	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC048399	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY264259	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466519	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CX204398	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CX220929	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DV061712	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000089506 ⟹ ENSMUSP00000086933

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	131,052,360 - 131,055,434 (+)	Ensembl
GRCm38.p6 Ensembl	2	131,210,440 - 131,213,514 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000110206 ⟹ ENSMUSP00000105835

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	131,052,524 - 131,054,784 (+)	Ensembl
GRCm38.p6 Ensembl	2	131,210,604 - 131,212,864 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000110208 ⟹ ENSMUSP00000105837

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	131,052,360 - 131,055,434 (+)	Ensembl
GRCm38.p6 Ensembl	2	131,210,440 - 131,213,514 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000110210 ⟹ ENSMUSP00000105839

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	131,052,344 - 131,055,431 (+)	Ensembl
GRCm38.p6 Ensembl	2	131,210,424 - 131,213,511 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000134086

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	131,052,290 - 131,054,922 (+)	Ensembl
GRCm38.p6 Ensembl	2	131,210,370 - 131,213,002 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000143546

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	131,048,998 - 131,053,367 (+)	Ensembl
GRCm38.p6 Ensembl	2	131,207,078 - 131,211,447 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000153097 ⟹ ENSMUSP00000121488

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	131,049,006 - 131,054,656 (+)	Ensembl
GRCm38.p6 Ensembl	2	131,207,086 - 131,212,736 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000153901

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	131,052,317 - 131,054,514 (+)	Ensembl
GRCm38.p6 Ensembl	2	131,210,397 - 131,212,594 (+)	Ensembl

RefSeq Acc Id:

NM_001291031 ⟹ NP_001277960

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	2	131,052,280 - 131,055,434 (+)	NCBI
GRCm38	2	131,210,360 - 131,213,514 (+)	NCBI
Celera	2	132,436,197 - 132,439,341 (+)	NCBI

Sequence:

show sequence

AACTGGGGCAGATAGTGGGAGGAGGACGTGGTGCCCTGGGGTAATGACGCGCTCAGCTGGCGGCAGAAGGGTGACCAGAGGTCAAAGTCTGCAAATCTAGGTTCCCTTCCTGAAGCGGGCTTGCTAAA
TTTCCTGTTGGGTAACTTTGAATTCTTGGTCTGTTTAGCTTTAGCTGTGGCTAAACACTGTTTCTCCTCAGCCTTGAGACCGGGGGCTGCCACTCTCGCTTTGCCCAGAGCGGCCAGGCTCTCTCTCT
GTGTATCTGTGGCTGACTTGAATTCCTGATTCTCTTGCCTCCGCCTCCCGAGGGTTGGGATTTCAGGTCTCTGGCTTTCCTGGAGCACCCACCCTGGAGCTATGGTCCACGCTTTCCTCATCCACACT
CTGAGGGCCCCGAATTTGGAAGATACAGGCCTTTGCCGAGTGCTCTATTCCTGTGTCTTTGGTGCTGAGAAATCACCCGATGATCCACGGTCACATGGTGCAGAAAGGGACAGGCTCTTCCGCAAGGA
ACAGATTTTGGCAGTGGCCAGACAGGTGGAGTCACTGTGTAGGCTGCAGCAGCAAGCGGCTGGATGTTCCTCCACAGACCTTCAGCCTCAGTTCTCAGCTGAACCTGTGTCCCTGCATGAGGCCCCTC
ATGGAGCCTTCCACCTGGCAGCCGGGGACCCTTTCCAGGAGCCTCGGACAGTGCTATGGCTGGGTATACTCTCCTTAGGTTTCGCCCTGGTGTTGGACACCCATGAGAACCTGCTGCTGGCTGAGCGC
ACGCTCCGGCTCTTGGCTCGCCTCCTCCTTGACCACCTCCGGCTGCTGACACCAGGTACCAACTTCTTGTTGCGGGCTGACCGTATTGAGGGAATCCTCACCCGCTTCCTGCCACATGGGCAGCTGCT
TTTCCTCAATGACCAGTTTGTCCAGGATCTGGAGAAGGAATTCAGTGCTGCTTGGCCCCGCTGACCCCTCACCAGACAAAGAGCGAGGGTAAAGGTTGCATACTGCTAGGGGAAGTGTGGCATCTGCC
TCTTGCCCAGCCTGCTCCCTGCTCTGATGTGTGGCCACGCTCAGGACATACGGATTGGGCAAGCCCGAAGGAAGGGACCTGGGTAGAAGGCTGTCTGTGCCTGTCCTCAGGCCACTGGAATTGTAAAG
TATTCATTGTAGAGCATCCTGAAGCTGGAACCGCCCCGTGATCGCGTAGGCTCTACAGTGTCCACCACGCGAGTCTTTGACTCCTCTTCATTCAACCCTACCAGCTGTCAGCACTGGAGCAGCATACT
GCCGAGCTCACCCTAGTCGATAGCCCCAGCACAAAAGGAGCCTCTGAGACCCACTTCACGGCTGGAGAACTGGGCTGGTACCCTAGCAAGCCCCGGTCCCTGCCTTTGCTCATCAGCAAGGATTTTGT
CGGCAAGGCCTGTTCTGCTTCTAGCTCCCCCACAGTGCAGAGCAGGGGGATTCTGCGGTTCCTTATGTGCCATGCCCCCGTGTCTGCCAAGAGAGCTGAGAACACAACAGCTTTTCTTGTCTGCTGGC
TGGCAGGGGCCAGGCGTCTGGCCCAGGTGATGCCTTATTTTGAATTAAAAACAATGGCGGTCTGAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001291032 ⟹ NP_001277961

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	2	131,052,280 - 131,055,434 (+)	NCBI
GRCm38	2	131,210,360 - 131,213,514 (+)	NCBI
Celera	2	132,436,197 - 132,439,341 (+)	NCBI

Sequence:

show sequence

AACTGGGGCAGATAGTGGGAGGAGGACGTGGTGCCCTGGGGTAATGACGCGCTCAGCTGGCGGCAGAAGGGTGACCAGAGGTCAAAGTCTGCAAATCTAGGTTCCCTTCCTGAAGCGGGCTTGCTAAA
TTTCCTGTTGGGTAACTTTGAATTCTTGGTCTGTTTAGCTTTAGCTGTGGCTAAACACTGTTTCTCCTCAGCCTTGAGACCGGGGGCTGCCACTCTCGCTTTGCCCAGAGCGGCCAGGCTCTCTCTCT
GTGTATCTGTGGCTGACTTGAATTCCTGATTCTCTTGCCTCCGCCTCCCGAGGGTTGGGATTTCAGGTCTCTGGCTTTCCTGGAGCACCCACCCTGGAGCTATGGTCCACGCTTTCCTCATCCACACT
CTGAGGGCCCCGAATTTGGAAGATACAGGCCTTTGCCGAGTGCTCTATTCCTGTGTCTTTGGTGCTGAGAAATCACCCGATGATCCACGGTCACATGGTGCAGAAAGGGACAGGCTCTTCCGCAAGGA
ACAGATTTTGGCAGTGGCCAGACAGGTGGAGTCACTGTGTAGGCTGCAGCAGCAAGCGGCTGGATGTTCCTCCACAGACCTTCAGCCTCAGTTCTCAGCTGAACCTGTGTCCCTGCATGAGGCCCCTC
ATGGAGCCTTCCACCTGGCAGCCGGGGACCCTTTCCAGGAGCCTCGGACAGTGCTATGGCTGGGTATACTCTCCTTAGGTTTCGCCCTGGTGTTGGACACCCATGAGAACCTGCTGCTGGCTGAGCGC
ACGCTCCGGCTCTTGGCTCGCCTCCTCCTTGACCACCTCCGGCTGCTGACACCAGCTGTCAGCACTGGAGCAGCATACTGCCGAGCTCACCCTAGTCGATAGCCCCAGCACAAAAGGAGCCTCTGAGA
CCCACTTCACGGCTGGAGAACTGGGCTGGTACCCTAGCAAGCCCCGGTCCCTGCCTTTGCTCATCAGCAAGGATTTTGTCGGCAAGGCCTGTTCTGCTTCTAGCTCCCCCACAGTGCAGAGCAGGGGG
ATTCTGCGGTTCCTTATGTGCCATGCCCCCGTGTCTGCCAAGAGAGCTGAGAACACAACAGCTTTTCTTGTCTGCTGGCTGGCAGGGGCCAGGCGTCTGGCCCAGGTGATGCCTTATTTTGAATTAAA
AACAATGGCGGTCTGAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001355593 ⟹ NP_001342522

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	2	131,052,280 - 131,055,434 (+)	NCBI
GRCm38	2	131,210,360 - 131,213,514 (+)	NCBI

Sequence:

show sequence

AACTGGGGCAGATAGTGGGAGGAGGACGTGGTGCCCTGGGGTAATGACGCGCTCAGCTGGCGGC
AGAAGGGTGACCAGAGGTCAAAGTCTGCAAATCTAGGTTCCCTTCCTGAAGCGGGCTTGCTAAATTTCCTGTTGGGTAACTTTGAATTCTTGGTCTGTTTAGCTTTAGCTGTGGCTAAACACTGTTTC
TCCTCAGCCTTGAGACCGGGGGCTGCCACTCTCGCTTTGCCCAGAGCGGCCAGGCTCTCTCTCTGTGTATCTGTGGCTGACTTGAATTCCTGATTCTCTTGCCTCCGCCTCCCGAGGGTTGGGATTTC
AGGTCTCTGGCTTTCCTGGAGCACCCACCCTGGAGCTATGGTCCACGCTTTCCTCATCCACACTCTGAGGGCCCCGAATTTGGAAGATACAGGCCTTTGCCGAGTGCTCTATTCCTGTGTCTTTGGTG
CTGAGAAATCACCCGATGATCCACGGTCACATGGTGCAGAAAGGGACAGGCTCTTCCGCAAGGAACAGATTTTGGCAGTGGCCAGGTGGAGTCACTGTGTAGGCTGCAGCAGCAAGCGGCTGGATGTT
CCTCCACAGACCTTCAGCCTCAGTTCTCAGCTGAACCTGTGTCCCTGCATGAGGCCCCTCATGGAGCCTTCCACCTGGCAGCCGGGGACCCTTTCCAGGAGCCTCGGACAGTGCTATGGCTGGGTATA
CTCTCCTTAGGTTTCGCCCTGGTGTTGGACACCCATGAGAACCTGCTGCTGGCTGAGCGCACGCTCCGGCTCTTGGCTCGCCTCCTCCTTGACCACCTCCGGCTGCTGACACCAGGTACCAACTTCTT
GTTGCGGGCTGACCGTATTGAGGGAATCCTCACCCGCTTCCTGCCACATGGGCAGCTGCTTTTCCTCAATGACCAGTTTGTCCAGGATCTGGAGAAGGAATTCAGTGCTGCTTGGCCCCGCTGACCCC
TCACCAGACAAAGAGCGAGGGTAAAGGTTGCATACTGCTAGGGGAAGTGTGGCATCTGCCTCTTGCCCAGCCTGCTCCCTGCTCTGATGTGTGGCCACGCTCAGGACATACGGATTGGGCAAGCCCGA
AGGAAGGGACCTGGGTAGAAGGCTGTCTGTGCCTGTCCTCAGGCCACTGGAATTGTAAAGTATTCATTGTAGAGCATCCTGAAGCTGGAACCGCCCCGTGATCGCGTAGGCTCTACAGTGTCCACCAC
GCGAGTCTTTGACTCCTCTTCATTCAACCCTACCAGCTGTCAGCACTGGAGCAGCATACTGCCGAGCTCACCCTAGTCGATAGCCCCAGCACAAAAGGAGCCTCTGAGACCCACTTCACGGCTGGAGA
ACTGGGCTGGTACCCTAGCAAGCCCCGGTCCCTGCCTTTGCTCATCAGCAAGGATTTTGTCGGCAAGGCCTGTTCTGCTTCTAGCTCCCCCACAGTGCAGAGCAGGGGGATTCTGCGGTTCCTTATGT
GCCATGCCCCCGTGTCTGCCAAGAGAGCTGAGAACACAACAGCTTTTCTTGTCTGCTGGCTGGCAGGGGCCAGGCGTCTGGCCCAGGTGATGCCTTATTTTGAATTAAAAACAATGGCGGTCTGA

hide sequence

RefSeq Acc Id:

NM_027129 ⟹ NP_081405

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	2	131,052,280 - 131,055,434 (+)	NCBI
GRCm38	2	131,210,360 - 131,213,514 (+)	NCBI
MGSCv37	2	131,036,176 - 131,039,250 (+)	RGD
Celera	2	132,436,197 - 132,439,341 (+)	NCBI
cM Map	2		ENTREZGENE

Sequence:

show sequence

AACTGGGGCAGATAGTGGGAGGAGGACGTGGTGCCCTGGGGTAATGACGCGCTCAGCTGGCGGCAGAAGGGTGACCAGAGGTCAAAGTCTGCAAATCTAGGTTCCCTTCCTGAAGCGGGCTTGCTAAA
TTTCCTGTTGGGTAACTTTGAATTCTTGGTCTGTTTAGCTTTAGCTGTGGCTAAACACTGTTTCTCCTCAGCCTTGAGACCGGGGGCTGCCACTCTCGCTTTGCCCAGAGCGGCCAGGCTCTCTCTCT
GTGTATCTGTGGCTGACTTGAATTCCTGATTCTCTTGCCTCCGCCTCCCGAGGGTTGGGATTTCAGGTCTCTGGCTTTCCTGGAGCACCCACCCTGGAGCTATGGTCCACGCTTTCCTCATCCACACT
CTGAGGGCCCCGAATTTGGAAGATACAGGCCTTTGCCGAGTGCTCTATTCCTGTGTCTTTGGTGCTGAGAAATCACCCGATGATCCACGGTCACATGGTGCAGAAAGGGACAGGCTCTTCCGCAAGGA
ACAGATTTTGGCAGTGGCCAGACAGGTGGAGTCACTGTGTAGGCTGCAGCAGCAAGCGGCTGGATGTTCCTCCACAGACCTTCAGCCTCAGTTCTCAGCTGAACCTGTGTCCCTGCATGAGGCCCCTC
ATGGAGCCTTCCACCTGGCAGCCGGGGACCCTTTCCAGGAGCCTCGGACAGTGCTATGGCTGGGTATACTCTCCTTAGGTTTCGCCCTGGTGTTGGACACCCATGAGAACCTGCTGCTGGCTGAGCGC
ACGCTCCGGCTCTTGGCTCGCCTCCTCCTTGACCACCTCCGGCTGCTGACACCAGTTTGTCCAGGATCTGGAGAAGGAATTCAGTGCTGCTTGGCCCCGCTGACCCCTCACCAGACAAAGAGCGAGGG
TAAAGGTTGCATACTGCTAGGGGAAGTGTGGCATCTGCCTCTTGCCCAGCCTGCTCCCTGCTCTGATGTGTGGCCACGCTCAGGACATACGGATTGGGCAAGCCCGAAGGAAGGGACCTGGGTAGAAG
GCTGTCTGTGCCTGTCCTCAGGCCACTGGAATTGTAAAGTATTCATTGTAGAGCATCCTGAAGCTGGAACCGCCCCGTGATCGCGTAGGCTCTACAGTGTCCACCACGCGAGTCTTTGACTCCTCTTC
ATTCAACCCTACCAGCTGTCAGCACTGGAGCAGCATACTGCCGAGCTCACCCTAGTCGATAGCCCCAGCACAAAAGGAGCCTCTGAGACCCACTTCACGGCTGGAGAACTGGGCTGGTACCCTAGCAA
GCCCCGGTCCCTGCCTTTGCTCATCAGCAAGGATTTTGTCGGCAAGGCCTGTTCTGCTTCTAGCTCCCCCACAGTGCAGAGCAGGGGGATTCTGCGGTTCCTTATGTGCCATGCCCCCGTGTCTGCCA
AGAGAGCTGAGAACACAACAGCTTTTCTTGTCTGCTGGCTGGCAGGGGCCAGGCGTCTGGCCCAGGTGATGCCTTATTTTGAATTAAAAACAATGGCGGTCTGAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NR_110992

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	2	131,052,280 - 131,055,434 (+)	NCBI
GRCm38	2	131,210,360 - 131,213,514 (+)	NCBI
Celera	2	132,436,197 - 132,439,341 (+)	NCBI

Sequence:

show sequence

AACTGGGGCAGATAGTGGGAGGAGGACGTGGTGCCCTGGGGTAATGACGCGCTCAGCTGGCGGCAGAAGGGTGACCAGAGGTCAAAGTCTGCAAATCTAGGTTCCCTTCCTGAAGCGGGCTTGCTAAA
TTTCCTGTTGGGTAACTTTGAATTCTTGGTCTGTTTAGCTTTAGCTGTGGCTAAACACTGTTTCTCCTCAGCCTTGAGACCGGGGGCTGCCACTCTCGCTTTGCCCAGAGCGGCCAGGCTCTCTCTCT
GTGTATCTGTGGCTGACTTGAATTCCTGATTCTCTTGCCTCCGCCTCCCGAGGGTTGGGATTTCAGACAGGTGGAGTCACTGTGTAGGCTGCAGCAGCAAGCGGCTGGATGTTCCTCCACAGACCTTC
AGCCTCAGTTCTCAGCTGAACCTGTGTCCCTGCATGAGGCCCCTCATGGAGCCTTCCACCTGGCAGCCGGGGACCCTTTCCAGGAGCCTCGGACAGTGCTATGGCTGGGTATACTCTCCTTAGGTTTC
GCCCTGGTGTTGGACACCCATGAGAACCTGCTGCTGGCTGAGCGCACGCTCCGGCTCTTGGCTCGCCTCCTCCTTGACCACCTCCGGCTGCTGACACCAGGTACCAACTTCTTGTTGCGGGCTGACCG
TATTGAGGGAATCCTCACCCGCTTCCTGCCACATGGGCAGCTGCTTTTCCTCAATGACCAGTTTGTCCAGGATCTGGAGAAGGAATTCAGTGCTGCTTGGCCCCGCTGACCCCTCACCAGACAAAGAG
CGAGGGTAAAGGTTGCATACTGCTAGGGGAAGTGTGGCATCTGCCTCTTGCCCAGCCTGCTCCCTGCTCTGATGTGTGGCCACGCTCAGGACATACGGATTGGGCAAGCCCGAAGGAAGGGACCTGGG
TAGAAGGCTGTCTGTGCCTGTCCTCAGGCCACTGGAATTGTAAAGTATTCATTGTAGAGCATCCTGAAGCTGGAACCGCCCCGTGATCGCGTAGGCTCTACAGTGTCCACCACGCGAGTCTTTGACTC
CTCTTCATTCAACCCTACCAGCTGTCAGCACTGGAGCAGCATACTGCCGAGCTCACCCTAGTCGATAGCCCCAGCACAAAAGGAGCCTCTGAGACCCACTTCACGGCTGGAGAACTGGGCTGGTACCC
TAGCAAGCCCCGGTCCCTGCCTTTGCTCATCAGCAAGGATTTTGTCGGCAAGGCCTGTTCTGCTTCTAGCTCCCCCACAGTGCAGAGCAGGGGGATTCTGCGGTTCCTTATGTGCCATGCCCCCGTGT
CTGCCAAGAGAGCTGAGAACACAACAGCTTTTCTTGTCTGCTGGCTGGCAGGGGCCAGGCGTCTGGCCCAGGTGATGCCTTATTTTGAATTAAAAACAATGGCGGTCTGAAAAAAAAAAAAAAAAA

hide sequence


Protein RefSeqs	NP_001277960	(Get FASTA)	NCBI Sequence Viewer
	NP_001277961	(Get FASTA)	NCBI Sequence Viewer
	NP_001342522	(Get FASTA)	NCBI Sequence Viewer
	NP_081405	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH48399	(Get FASTA)	NCBI Sequence Viewer
	BAB26405	(Get FASTA)	NCBI Sequence Viewer
	BAC25007	(Get FASTA)	NCBI Sequence Viewer
	EDL28311	(Get FASTA)	NCBI Sequence Viewer
	EDL28312	(Get FASTA)	NCBI Sequence Viewer
	EDL28313	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000086933
	ENSMUSP00000105835
	ENSMUSP00000105837
	ENSMUSP00000105839
	ENSMUSP00000105839.2
GenBank Protein	Q9D742	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_081405 ⟸ NM_027129
- Peptide Label:	isoform a
- UniProtKB:	Q80V29 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVHAFLIHTLRAPNLEDTGLCRVLYSCVFGAEKSPDDPRSHGAERDRLFRKEQILAVARQVESLCRLQQQAAGCSSTDLQPQFSAEPVSLHEAPHGAFHLAAGDPFQEPRTVLWLGILSLGFALVLDT HENLLLAERTLRLLARLLLDHLRLLTPVCPGSGEGIQCCLAPLTPHQTKSEGKGCILLGEVWHLPLAQPAPCSDVWPRSGHTDWASPKEGTWVEGCLCLSSGHWNCKVFIVEHPEAGTAP hide sequence

RefSeq Acc Id:	NP_001277960 ⟸ NM_001291031
- Peptide Label:	isoform b
- UniProtKB:	A2ANC6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVHAFLIHTLRAPNLEDTGLCRVLYSCVFGAEKSPDDPRSHGAERDRLFRKEQILAVARQVESLCRLQQQAAGCSSTDLQPQFSAEPVSLHEAPHGAFHLAAGDPFQEPRTVLWLGILSLGFALVLDT HENLLLAERTLRLLARLLLDHLRLLTPGTNFLLRADRIEGILTRFLPHGQLLFLNDQFVQDLEKEFSAAWPR hide sequence

RefSeq Acc Id:	NP_001277961 ⟸ NM_001291032
- Peptide Label:	isoform c
- UniProtKB:	A2ANC8 (UniProtKB/Swiss-Prot), Q9D742 (UniProtKB/Swiss-Prot), Q8CF73 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVHAFLIHTLRAPNLEDTGLCRVLYSCVFGAEKSPDDPRSHGAERDRLFRKEQILAVARQVESLCRLQQQAAGCSSTDLQPQFSAEPVSLHEAPHGAFHLAAGDPFQEPRTVLWLGILSLGFALVLDT HENLLLAERTLRLLARLLLDHLRLLTPAVSTGAAYCRAHPSR hide sequence

RefSeq Acc Id:	NP_001342522 ⟸ NM_001355593
- Peptide Label:	isoform d
- UniProtKB:	A2ANC5 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSMUSP00000105835 ⟸ ENSMUST00000110206

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9D742-F1-model_v2	AlphaFold	Q9D742	1-170	view protein structure

RGD ID:

6832520

Promoter ID:

MM_KWN:31796

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

BoneMarrow_0Hour

Transcripts:

OTTMUST00000038253, OTTMUST00000038254

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	2	131,031,871 - 131,032,722 (+)	MPROMDB

RGD ID:

6830570

Promoter ID:

MM_KWN:31797

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

ENSMUST00000110206, ENSMUST00000110208, ENSMUST00000110210, NM_027129, OTTMUST00000038250, OTTMUST00000038252

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	2	131,035,456 - 131,036,422 (+)	MPROMDB

RGD ID:

6878800

Promoter ID:

EPDNEW_M2851

Type:

initiation region

Name:

Ap5s1_1

Description:

Mus musculus adaptor-related protein 5 complex, sigma 1 subunit, transcript variant 2, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M2852

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	2	131,210,402 - 131,210,462	EPDNEW

RGD ID:

6878802

Promoter ID:

EPDNEW_M2852

Type:

initiation region

Name:

Ap5s1_2

Description:

Mus musculus adaptor-related protein 5 complex, sigma 1 subunit, transcript variant 2, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M2851

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	2	131,210,544 - 131,210,604	EPDNEW

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000068264	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000089506	ENTREZGENE
	ENSMUST00000110206	ENTREZGENE
	ENSMUST00000110208	ENTREZGENE
	ENSMUST00000110210	ENTREZGENE
	ENSMUST00000110210.8	UniProtKB/Swiss-Prot
InterPro	AP-5_subunit_s1	UniProtKB/Swiss-Prot
KEGG Report	mmu:69596	UniProtKB/Swiss-Prot
MGD	MGI:1916846	ENTREZGENE
NCBI Gene	69596	ENTREZGENE
PANTHER	AP-5 COMPLEX SUBUNIT SIGMA-1	UniProtKB/Swiss-Prot
	PTHR16120	UniProtKB/Swiss-Prot
Pfam	AP-5_subunit_s1	UniProtKB/Swiss-Prot
PhenoGen	Ap5s1	PhenoGen
UniProt	A2ANC4_MOUSE	UniProtKB/TrEMBL
	A2ANC5	ENTREZGENE, UniProtKB/TrEMBL
	A2ANC6	ENTREZGENE, UniProtKB/TrEMBL
	A2ANC8	ENTREZGENE
	AP5S1_MOUSE	UniProtKB/Swiss-Prot
	Q80V29	ENTREZGENE, UniProtKB/TrEMBL
	Q8CF73	ENTREZGENE, UniProtKB/TrEMBL
	Q9D742	ENTREZGENE
UniProt Secondary	A2ANC8	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-11-27	Ap5s1	adaptor-related protein 5 complex, sigma 1 subunit	2310035K24Rik	RIKEN cDNA 2310035K24 gene	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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