Flacc1 (flagellum associated containing coiled-coil domains 1) - Rat Genome Database

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Gene: Flacc1 (flagellum associated containing coiled-coil domains 1) Mus musculus
Analyze
Symbol: Flacc1
Name: flagellum associated containing coiled-coil domains 1
RGD ID: 1616647
MGI Page MGI
Description: Located in cytoplasmic vesicle and outer dense fiber. Orthologous to human FLACC1 (flagellum associated containing coiled-coil domains 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4933405P16Rik; 4933425F06Rik; Als2; Als2cr12; amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12; amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12 (human); amyotrophic lateral sclerosis 2 chromosomal region candidate gene 12 protein homolog; amyotrophic lateral sclerosis 2 chromosome region 12; flagellum-associated coiled-coil domain-containing protein 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39158,696,085 - 58,735,167 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl158,686,062 - 58,735,148 (-)EnsemblGRCm39 Ensembl
GRCm38158,656,926 - 58,696,008 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl158,646,903 - 58,695,989 (-)EnsemblGRCm38mm10GRCm38
MGSCv37158,714,961 - 58,752,833 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36158,602,667 - 58,640,503 (-)NCBIMGSCv36mm8
Celera159,177,077 - 59,214,991 (-)NCBICelera
Cytogenetic Map1C1.3NCBI
cM Map129.15NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:17662146   PMID:21402173   PMID:21873635   PMID:23375831  
PMID:32325033   PMID:33156557  


Genomics

Comparative Map Data
Flacc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39158,696,085 - 58,735,167 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl158,686,062 - 58,735,148 (-)EnsemblGRCm39 Ensembl
GRCm38158,656,926 - 58,696,008 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl158,646,903 - 58,695,989 (-)EnsemblGRCm38mm10GRCm38
MGSCv37158,714,961 - 58,752,833 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36158,602,667 - 58,640,503 (-)NCBIMGSCv36mm8
Celera159,177,077 - 59,214,991 (-)NCBICelera
Cytogenetic Map1C1.3NCBI
cM Map129.15NCBI
FLACC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382201,288,271 - 201,364,289 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2201,288,271 - 201,357,398 (-)EnsemblGRCh38hg38GRCh38
GRCh372202,152,994 - 202,222,068 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362201,861,230 - 201,924,421 (-)NCBINCBI36Build 36hg18NCBI36
Build 342201,978,499 - 202,041,682NCBI
Celera2195,904,962 - 195,973,949 (-)NCBICelera
Cytogenetic Map2q33.1NCBI
HuRef2194,001,532 - 194,070,517 (-)NCBIHuRef
CHM1_12202,159,167 - 202,228,121 (-)NCBICHM1_1
T2T-CHM13v2.02201,768,929 - 201,844,975 (-)NCBIT2T-CHM13v2.0
Flacc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8967,809,731 - 67,837,793 (-)NCBIGRCr8
mRatBN7.2960,315,581 - 60,343,692 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl960,315,582 - 60,343,648 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx968,811,213 - 68,839,397 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0973,927,173 - 73,955,357 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0972,245,430 - 72,273,623 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0965,665,663 - 65,693,822 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl965,665,664 - 65,693,822 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0965,472,507 - 65,500,565 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4957,441,360 - 57,469,795 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1957,588,342 - 57,616,777 (-)NCBI
Celera957,756,584 - 57,784,074 (-)NCBICelera
Cytogenetic Map9q31NCBI
Flacc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955403264,980 - 321,484 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955403264,969 - 321,370 (+)NCBIChiLan1.0ChiLan1.0
FLACC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213103,908,781 - 103,987,516 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B103,923,780 - 103,995,587 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B88,541,496 - 88,618,269 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B206,697,119 - 206,766,071 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B206,697,119 - 206,766,071 (-)Ensemblpanpan1.1panPan2
FLACC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13710,404,512 - 10,438,102 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3710,404,744 - 10,430,950 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3711,288,310 - 11,321,877 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03710,309,120 - 10,342,914 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3710,309,338 - 10,342,912 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13710,289,940 - 10,320,708 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03710,268,927 - 10,302,564 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03710,262,253 - 10,296,036 (-)NCBIUU_Cfam_GSD_1.0
Flacc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303158,629,874 - 158,661,225 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936726600,420 - 625,853 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936726600,213 - 631,513 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FLACC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15104,942,349 - 104,985,722 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115104,950,504 - 104,986,350 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215116,343,375 - 116,378,479 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FLACC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11086,945,622 - 87,009,252 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1086,946,674 - 87,007,579 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040112,406,707 - 112,477,556 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Flacc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624899389,719 - 416,603 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624899361,645 - 416,374 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:122
Count of miRNA genes:117
Interacting mature miRNAs:117
Transcripts:ENSMUST00000055313
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
12910788Pwgrq9_mpost-weaning growth rate QTL 9 (mouse)14086800867270256Mouse
18182931Metl1_mmetabolite locus 1, pyridoxate (mouse)14127539975275399Mouse
12910786Pwgrq10_mpost-weaning growth rate QTL 10 (mouse)14086800867270256Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
1357824Estoq4_membryo survival total QTL 4 (mouse)Not determined13476013873976915Mouse
14746998Mancz1_mmandible centroid size 1 (mouse)15794135191941351Mouse
1300746Skl1_mskeletal size (tail length) 1 (mouse)Not determined15799197791992080Mouse
4141724Idd5.1_minsulin dependent diabetes susceptibility 5.1 (mouse)Not determined5772827662946882Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
10043965Obq24_mobesity QTL 24 (mouse)Not determined15089021684890216Mouse
1301430Cdcs2_mcytokine deficiency colitis susceptibility 2 (mouse)Not determined14889234582892485Mouse
1558717Ses1a_msalmonella enteritidis susceptibility 1a (mouse)Not determined15672692290727077Mouse
1357759W3q12_mweight 3 weeks QTL 12 (mouse)Not determined13476013873976915Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1301667Lxw5_mlupus BXSB x NZW 5 (mouse)Not determined15854919192549443Mouse
1558822Vas1_mautoimmune vasitis resistance 1 (mouse)Not determined14888900682889210Mouse
1301670Ssta1_msusceptibility to Salmonella typhimurium antigens 1 (mouse)Not determined14594675579946882Mouse
1357475w3q13_mweight 3 weeks QTL 13 (mouse)Not determined12310959173976915Mouse
1357741Nidd5k_mNidd5 on KK-A<y> (mouse)Not determined15597494889975057Mouse
1301162Skull1_mskull morphology 1 (mouse)Not determined15799197791992080Mouse
4142467Wbcq1_mwhite blood cell quantitative locus 1 (mouse)Not determined15626621490266360Mouse
1301166Thypr2_mthymocyte proliferative response 2 (mouse)Not determined14127312475273271Mouse
1301933Insq6_minsulin QTL 6 (mouse)Not determined15672692290727077Mouse
1357524W6q14_mweight 6 weeks QTL 14 (mouse)Not determined13476013873976915Mouse
1301714Vertcling_mvertical clinging (mouse)Not determined14293803176938167Mouse
4141305Tgq9_mtriglyceride QTL 9 (mouse)Not determined5142160585421605Mouse
1357651Lgq5_mlate growth QTL 5 (mouse)Not determined13476013873976915Mouse
11100001Col4a1m1_mcollagen, type IV, alpha 1 modifier 1 (mouse)12555019162946882Mouse
1301211Bbaa11_mB.burgdorferi-associated arthritis 11 (mouse)Not determined14888900682889210Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
1558855Eae30_mexperimental allergic encephalomyelitis susceptibility 30 (mouse)Not determined14541777372975057Mouse
1301954Lrnx11_mlearning-contextual 11 (mouse)Not determined13913280874516365Mouse
1357505Vtbt1_mvertebral trabecular bone trait 1 (mouse)Not determined15626621490266360Mouse
1357506W10q6_mweight 10 weeks QTL 6 (mouse)Not determined13476013873976915Mouse
4141032Wbcc1_mwhite blood cell count 1 (mouse)Not determined4225966776259667Mouse
1301444Alcw5_malcohol withdrawal 5 (mouse)Not determined15854919192549443Mouse
39128207Lwq16_mliver weight QTL 16 (mouse)13476013873976915Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
4142307Shali1_msurvival time to hyperoxic acute lung injury 1 (mouse)Not determined5196402570406589Mouse
12880409V125Dq1_mvitamin D active form serum level QTL 1 (mouse)12603916060039160Mouse
14747009Manh49_mmandible shape 49 (mouse)15794135191941351Mouse
1301616Yaa2_mY-linked autoimmune acceleration 2 (mouse)Not determined14685469080854839Mouse
12879917Shm3_msperm head morphology 3 (mouse)14418690462946882Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1558905Gct7_mgranulosa cell tumorigenesis 7 (mouse)Not determined14734989481350013Mouse
12910780Pwgrq11_mpost-weaning growth rate QTL 11 (mouse)14086800867270256Mouse
1301225Sle7_msystematic lupus erythematosus susceptibility 7 (mouse)Not determined14685469080854839Mouse
1357679Egrm1_mearly growth rate, maternal effect 1 (mouse)Not determined15799197791992080Mouse

Markers in Region
D1Mit75  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38158,891,199 - 58,891,369UniSTSGRCm38
GRCm38158,691,390 - 58,691,579UniSTSGRCm38
MGSCv37158,748,234 - 58,748,423UniSTSGRCm37
MGSCv37158,948,043 - 58,948,213UniSTSGRCm37
Celera159,210,392 - 59,210,581UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map1C1.3UniSTS
cM Map132.1UniSTS
cM Map1 UniSTS
Whitehead Genetic131.7UniSTS
Whitehead_YAC1 UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001347056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_175370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006495613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006495615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006495617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006495618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017321225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_865219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC112968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC118698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI642686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK016678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000055313   ⟹   ENSMUSP00000062497
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,697,279 - 58,735,112 (-)Ensembl
GRCm38.p6 Ensembl158,658,120 - 58,695,953 (-)Ensembl
Ensembl Acc Id: ENSMUST00000185953
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,706,054 - 58,735,119 (-)Ensembl
GRCm38.p6 Ensembl158,666,895 - 58,695,960 (-)Ensembl
Ensembl Acc Id: ENSMUST00000188772   ⟹   ENSMUSP00000140780
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,686,062 - 58,735,148 (-)Ensembl
GRCm38.p6 Ensembl158,646,903 - 58,695,989 (-)Ensembl
Ensembl Acc Id: ENSMUST00000188839
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,715,355 - 58,730,209 (-)Ensembl
GRCm38.p6 Ensembl158,676,196 - 58,691,050 (-)Ensembl
Ensembl Acc Id: ENSMUST00000191252   ⟹   ENSMUSP00000140613
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,697,522 - 58,731,601 (-)Ensembl
GRCm38.p6 Ensembl158,658,363 - 58,692,442 (-)Ensembl
Ensembl Acc Id: ENSMUST00000191565   ⟹   ENSMUSP00000139420
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,697,279 - 58,731,601 (-)Ensembl
GRCm38.p6 Ensembl158,658,120 - 58,692,442 (-)Ensembl
RefSeq Acc Id: NM_001347056   ⟹   NP_001333985
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39158,697,280 - 58,731,604 (-)NCBI
GRCm38158,658,121 - 58,692,445 (-)NCBI
Sequence:
RefSeq Acc Id: NM_175370   ⟹   NP_780579
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39158,697,280 - 58,735,148 (-)NCBI
GRCm38158,658,121 - 58,695,989 (-)NCBI
MGSCv37158,714,961 - 58,752,833 (-)RGD
Celera159,177,077 - 59,214,991 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006495613   ⟹   XP_006495676
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39158,696,085 - 58,735,167 (-)NCBI
GRCm38158,656,926 - 58,696,008 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006495615   ⟹   XP_006495678
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39158,698,870 - 58,735,167 (-)NCBI
GRCm38158,659,711 - 58,696,008 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006495617   ⟹   XP_006495680
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39158,707,032 - 58,735,166 (-)NCBI
GRCm38158,667,873 - 58,696,007 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006495618   ⟹   XP_006495681
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39158,696,085 - 58,730,752 (-)NCBI
GRCm38158,656,926 - 58,691,595 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017321225   ⟹   XP_017176714
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39158,696,085 - 58,730,751 (-)NCBI
GRCm38158,656,926 - 58,691,594 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030255466   ⟹   XP_030111326
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39158,696,085 - 58,735,040 (-)NCBI
GRCm38158,656,926 - 58,695,882 (-)NCBI
Sequence:
RefSeq Acc Id: XR_865219
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39158,698,453 - 58,735,167 (-)NCBI
GRCm38158,659,294 - 58,696,008 (-)NCBI
Sequence:
RefSeq Acc Id: NP_780579   ⟸   NM_175370
- Peptide Label: isoform b
- UniProtKB: Q8BVM7 (UniProtKB/Swiss-Prot),   A0A087WRU9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006495676   ⟸   XM_006495613
- Peptide Label: isoform X1
- UniProtKB: A0A087WNN1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006495681   ⟸   XM_006495618
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006495678   ⟸   XM_006495615
- Peptide Label: isoform X2
- UniProtKB: A0A087WRU9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006495680   ⟸   XM_006495617
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017176714   ⟸   XM_017321225
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_030111326   ⟸   XM_030255466
- Peptide Label: isoform X1
- UniProtKB: A0A087WNN1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001333985   ⟸   NM_001347056
- Peptide Label: isoform c
- UniProtKB: A0A087WNN1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000140613   ⟸   ENSMUST00000191252
Ensembl Acc Id: ENSMUSP00000139420   ⟸   ENSMUST00000191565
Ensembl Acc Id: ENSMUSP00000140780   ⟸   ENSMUST00000188772
Ensembl Acc Id: ENSMUSP00000062497   ⟸   ENSMUST00000055313

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BVM7-F1-model_v2 AlphaFold Q8BVM7 1-383 view protein structure

Promoters
RGD ID:6873808
Promoter ID:EPDNEW_M355
Type:initiation region
Name:Als2cr12_1
Description:Mus musculus amyotrophic lateral sclerosis 2 chromosome region12 , transcript variant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38158,695,960 - 58,696,020EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1918359 AgrOrtholog
Ensembl Genes ENSMUSG00000047528 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000055313 ENTREZGENE
  ENSMUST00000055313.14 UniProtKB/Swiss-Prot
  ENSMUST00000188772 ENTREZGENE
  ENSMUST00000188772.7 UniProtKB/TrEMBL
  ENSMUST00000191252.7 UniProtKB/TrEMBL
  ENSMUST00000191565 ENTREZGENE
  ENSMUST00000191565.7 UniProtKB/TrEMBL
InterPro ALS2CR12 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:108812 UniProtKB/Swiss-Prot
MGD MGI:1918359 ENTREZGENE
NCBI Gene Flacc1 ENTREZGENE
PANTHER FLAGELLUM-ASSOCIATED COILED-COIL DOMAIN-CONTAINING PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR21707 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Flacc1 PhenoGen
UniProt A0A087WNN1 ENTREZGENE, UniProtKB/TrEMBL
  A0A087WRG1_MOUSE UniProtKB/TrEMBL
  A0A087WRU9 ENTREZGENE, UniProtKB/TrEMBL
  FACC1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-26 Flacc1  flagellum associated containing coiled-coil domains 1  4933425F06Rik  RIKEN cDNA 4933425F06 gene  Symbol and/or name updated 27372883 PROVISIONAL
2024-08-21 4933425F06Rik  RIKEN cDNA 4933425F06 gene  Flacc1  flagellum associated containing coiled-coil domains 1  Symbol and/or name change 5135510 APPROVED
2019-04-23 Flacc1  flagellum associated containing coiled-coil domains 1  Als2cr12  amyotrophic lateral sclerosis 2 chromosome region 12  Symbol and/or name change 5135510 APPROVED
2017-10-31 Als2cr12  amyotrophic lateral sclerosis 2 chromosome region 12    amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12 (human)  Symbol and/or name change 5135510 APPROVED