Msi2 (musashi RNA-binding protein 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Msi2 (musashi RNA-binding protein 2) Mus musculus
Analyze
Symbol: Msi2
Name: musashi RNA-binding protein 2
RGD ID: 1614276
MGI Page MGI
Description: Enables poly(U) RNA binding activity. Involved in stem cell development. Located in cytoplasm. Is expressed in several structures, including central nervous system; gonad; hair follicle; limb bud; and sensory organ. Orthologous to human MSI2 (musashi RNA binding protein 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1700105C15Rik; AI451722; AI563628; AW489193; MGC118040; MGC130496; msi; Msi2h; Musa; musashi-2; Musashi2; RNA-binding protein Musashi homolog 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391188,230,208 - 88,609,197 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1188,230,208 - 88,609,339 (-)EnsemblGRCm39 Ensembl
GRCm381188,339,382 - 88,718,306 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1188,339,382 - 88,718,513 (-)EnsemblGRCm38mm10GRCm38
MGSCv371188,152,884 - 88,403,661 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361188,155,655 - 88,406,342 (-)NCBIMGSCv36mm8
Celera1197,951,761 - 98,327,496 (-)NCBICelera
Cytogenetic Map11CNCBI
cM Map1152.4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP,ISO)
1,4-dichlorobenzene  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2-methylcholine  (ISO)
4-hydroxyphenyl retinamide  (EXP)
acrolein  (ISO)
aflatoxin B1  (EXP,ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
antimycin A  (ISO)
aristolochic acid A  (ISO)
arsane  (EXP,ISO)
arsenic atom  (EXP,ISO)
arsenite(3-)  (EXP,ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chloroprene  (ISO)
chlorpyrifos  (EXP)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
CU-O LINKAGE  (ISO)
cyclosporin A  (EXP,ISO)
cylindrospermopsin  (ISO)
deguelin  (ISO)
dibenz[a,h]anthracene  (EXP)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (EXP)
ethyl methanesulfonate  (ISO)
fenpyroximate  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
fulvestrant  (ISO)
genistein  (ISO)
glycidyl methacrylate  (ISO)
hydrogen cyanide  (EXP)
hydrogen peroxide  (ISO)
lead diacetate  (EXP)
lead(0)  (EXP)
leflunomide  (ISO)
methoxychlor  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
milrinone  (ISO)
N,N-diethyl-m-toluamide  (ISO)
oxaliplatin  (ISO)
ozone  (ISO)
paracetamol  (ISO)
permethrin  (ISO)
phenylmercury acetate  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (EXP)
potassium cyanide  (EXP)
pyrimidifen  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (ISO)
sodium dichromate  (ISO)
sunitinib  (ISO)
tebufenpyrad  (ISO)
testosterone  (EXP,ISO)
thifluzamide  (ISO)
thiram  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
triadimefon  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (EXP)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal bone marrow cell morphology/development  (IAGP)
abnormal brain morphology  (IEA)
abnormal common lymphocyte progenitor cell morphology  (IAGP)
abnormal fertility/fecundity  (IAGP)
abnormal gait  (IEA)
abnormal hematopoietic stem cell physiology  (IAGP)
abnormal kidney morphology  (IEA)
abnormal liver morphology  (IEA)
abnormal myeloid leukocyte morphology  (IAGP)
abnormal retina morphology  (IEA)
abnormal spleen morphology  (IEA)
decreased B cell number  (IAGP)
decreased body length  (IEA)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased bone marrow cell number  (IAGP)
decreased brain size  (IEA)
decreased brain weight  (IEA)
decreased CD4-positive, alpha-beta T cell number  (IAGP)
decreased CD8-positive, alpha-beta T cell number  (IAGP)
decreased common myeloid progenitor cell number  (IAGP)
decreased DN2 thymocyte number  (IAGP)
decreased DN3 thymocyte number  (IAGP)
decreased double-negative T cell number  (IAGP)
decreased double-positive T cell number  (IAGP)
decreased erythrocyte cell number  (IAGP)
decreased exploration in new environment  (IEA)
decreased fasting circulating glucose level  (IEA)
decreased granulocyte number  (IAGP)
decreased hematopoietic stem cell number  (IAGP)
decreased immature B cell number  (IAGP)
decreased lean body mass  (IEA)
decreased leukocyte cell number  (IAGP)
decreased liver weight  (IEA)
decreased locomotor activity  (IEA)
decreased lymphocyte cell number  (IEA)
decreased macrophage cell number  (IAGP)
decreased mature B cell number  (IAGP)
decreased pre-B cell number  (IAGP)
decreased spleen weight  (IAGP)
decreased startle reflex  (IEA)
decreased tumor growth/size  (IAGP)
eye hemorrhage  (IEA)
increased circulating alkaline phosphatase level  (IEA)
increased circulating triglyceride level  (IEA)
increased mean platelet volume  (IEA)
increased total body fat amount  (IEA)
persistence of hyaloid vascular system  (IEA)
postnatal lethality  (IAGP)
prenatal lethality, incomplete penetrance  (IAGP)
small kidney  (IEA)
small liver  (IEA)
small spleen  (IAGP)
small thymus  (IAGP)
spleen hypoplasia  (IAGP)
thymus hypoplasia  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
2. Mouse MP Annotation Import Pipeline RGD automated import pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10512203   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11125038   PMID:11217851   PMID:11588182   PMID:12407178   PMID:12466851   PMID:12477932  
PMID:12520002   PMID:12904583   PMID:12923295   PMID:14610273   PMID:15273690   PMID:15741177   PMID:15840001   PMID:16033648   PMID:16141072   PMID:16141073   PMID:16400011   PMID:16602821  
PMID:16717192   PMID:17768378   PMID:17967808   PMID:18799693   PMID:19906978   PMID:20139417   PMID:20616797   PMID:20621054   PMID:20639863   PMID:20696379   PMID:21267068   PMID:21613258  
PMID:21677750   PMID:21826226   PMID:21873635   PMID:22421546   PMID:22496868   PMID:23307866   PMID:23604909   PMID:24154525   PMID:24395885   PMID:24671879   PMID:25380226   PMID:25664853  
PMID:25774828   PMID:25782991   PMID:26131972   PMID:26212080   PMID:26238476   PMID:26673327   PMID:27034466   PMID:27281208   PMID:27425143   PMID:27441652   PMID:27799368   PMID:28106071  
PMID:28107692   PMID:28143780   PMID:28884822   PMID:29091030   PMID:29581509   PMID:29997285   PMID:30955884   PMID:31059735   PMID:31138677   PMID:32325033   PMID:32332729   PMID:33168629  
PMID:33243988   PMID:33609283   PMID:34309875   PMID:34321999   PMID:34877814   PMID:36153373   PMID:36509891   PMID:36599932   PMID:36713428   PMID:37477898   PMID:37606581   PMID:37633478  
PMID:37802055   PMID:37923788   PMID:38355793   PMID:38373797   PMID:38467682  


Genomics

Comparative Map Data
Msi2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391188,230,208 - 88,609,197 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1188,230,208 - 88,609,339 (-)EnsemblGRCm39 Ensembl
GRCm381188,339,382 - 88,718,306 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1188,339,382 - 88,718,513 (-)EnsemblGRCm38mm10GRCm38
MGSCv371188,152,884 - 88,403,661 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361188,155,655 - 88,406,342 (-)NCBIMGSCv36mm8
Celera1197,951,761 - 98,327,496 (-)NCBICelera
Cytogenetic Map11CNCBI
cM Map1152.4NCBI
MSI2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381757,255,851 - 57,701,581 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1757,255,851 - 57,684,689 (+)EnsemblGRCh38hg38GRCh38
GRCh371755,333,212 - 55,762,050 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361752,688,930 - 53,112,298 (+)NCBINCBI36Build 36hg18NCBI36
Build 341752,689,372 - 53,065,542NCBI
Celera1751,795,383 - 52,219,094 (+)NCBICelera
Cytogenetic Map17q22NCBI
HuRef1750,694,663 - 51,117,860 (+)NCBIHuRef
CHM1_11755,398,967 - 55,822,559 (+)NCBICHM1_1
T2T-CHM13v2.01758,130,926 - 58,574,836 (+)NCBIT2T-CHM13v2.0
Msi2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81073,640,960 - 74,007,497 (-)NCBIGRCr8
mRatBN7.21073,143,760 - 73,510,566 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1073,147,380 - 73,510,157 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01075,673,840 - 76,040,106 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1075,681,393 - 76,039,964 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01074,071,835 - 74,435,491 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41076,776,415 - 77,149,277 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1072,051,638 - 72,417,027 (-)NCBICelera
Cytogenetic Map10q26NCBI
Msi2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554515,278,568 - 5,638,075 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554515,271,008 - 5,697,839 (-)NCBIChiLan1.0ChiLan1.0
MSI2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21973,431,449 - 73,859,482 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11778,242,455 - 78,670,376 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01751,335,550 - 51,763,572 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11756,194,337 - 56,621,330 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1756,194,360 - 56,613,698 (+)Ensemblpanpan1.1panPan2
MSI2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1932,017,951 - 32,409,457 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha931,257,115 - 31,645,725 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0932,825,471 - 33,214,836 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl932,825,157 - 33,214,400 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1931,611,023 - 31,999,606 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0931,894,294 - 32,282,733 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0931,977,953 - 32,366,683 (+)NCBIUU_Cfam_GSD_1.0
Msi2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560231,370,729 - 31,737,475 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364905,342,512 - 5,704,709 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364905,337,571 - 5,704,331 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MSI2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1233,537,196 - 33,975,548 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11233,537,163 - 33,974,845 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21234,609,449 - 34,637,812 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MSI2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11635,711,443 - 36,141,949 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1635,719,075 - 36,141,925 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660776,529,836 - 6,961,096 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Msi2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479512,230,802 - 12,596,419 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479512,230,756 - 12,603,360 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Msi2
1902 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2963
Count of miRNA genes:866
Interacting mature miRNAs:1193
Transcripts:ENSMUST00000092794, ENSMUST00000107908, ENSMUST00000107909, ENSMUST00000126293, ENSMUST00000138790, ENSMUST00000144699, ENSMUST00000148013
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181574481115574636Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
27226758Femd3_mfemur midshaft diameter 3, 5 week (mouse)1180890826101890826Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185844911119844911Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179156009107616472Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181810267115810267Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170691198104691366Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170691198104691366Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177770978111771099Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177437183111437322Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
1357631Motr1_mmodifier of tubby retinal degeneration 1 (mouse)Not determined1187691198103274115Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172726125106726289Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172818615106818733Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177437183111437322Mouse
15092049Wsigrme3_mweek six growth rate, maternal effect 3 (mouse)118487732496629512Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170691198104691366Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181574481115574636Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
14746970Manh71_mmandible shape 71 (mouse)1179416257113416257Mouse
15092057Lgrme3_mlate growth rate, maternal effect 3 (mouse)118487732496629512Mouse
10043865T2dm5sa_mtype 2 diabetes mellitus 5 in SMXA RI mice (mouse)Not determined1179813759104502698Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172818615106818733Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182377698116377820Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177063779111063918Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186608320120608320Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
15039374Adip29_madiposity 29 (mouse)1186608320120608320Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186608320120608320Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116331940794063918Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse
1302124Eae7_msusceptibility to experimental allergic encephalomyelitis 7 (mouse)Not determined117757387399377820Mouse

Markers in Region
AW822009  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381188,455,129 - 88,455,359UniSTSGRCm38
MGSCv371188,268,631 - 88,268,861UniSTSGRCm37
Celera1198,068,189 - 98,068,419UniSTS
Cytogenetic Map11CUniSTS
Whitehead/MRC_RH111147.32UniSTS
AW743339  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381188,460,423 - 88,460,675UniSTSGRCm38
MGSCv371188,273,925 - 88,274,177UniSTSGRCm37
Celera1198,073,494 - 98,073,746UniSTS
Cytogenetic Map11CUniSTS
Whitehead/MRC_RH111147.0UniSTS
AI563628  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381188,342,169 - 88,342,285UniSTSGRCm38
MGSCv371188,155,671 - 88,155,787UniSTSGRCm37
Celera1197,954,541 - 97,954,657UniSTS
Cytogenetic Map11CUniSTS
Whitehead/MRC_RH111141.9UniSTS
AW489193  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381188,341,822 - 88,341,960UniSTSGRCm38
MGSCv371188,155,324 - 88,155,462UniSTSGRCm37
Celera1197,954,191 - 97,954,332UniSTS
Cytogenetic Map11CUniSTS
Whitehead/MRC_RH111143.43UniSTS
Msi2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5E3-FUniSTS
Cytogenetic Map11CUniSTS
cM Map11 UniSTS
D11Fpm105  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381188,702,062 - 88,702,410UniSTSGRCm38
MGSCv371188,563,376 - 88,563,724UniSTSGRCm37
Celera1198,312,078 - 98,312,457UniSTS
Cytogenetic Map11CUniSTS
D11Fpm106  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381188,556,543 - 88,557,024UniSTSGRCm38
MGSCv371188,370,045 - 88,370,526UniSTSGRCm37
Celera1198,169,215 - 98,169,620UniSTS
Cytogenetic Map11CUniSTS
D11Fpm107  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381188,525,362 - 88,525,724UniSTSGRCm38
MGSCv371188,338,864 - 88,339,226UniSTSGRCm37
Celera1198,138,389 - 98,138,735UniSTS
Cytogenetic Map11CUniSTS
UniSTS:236694  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381188,339,928 - 88,340,337UniSTSGRCm38
MGSCv371188,153,430 - 88,153,839UniSTSGRCm37
Celera1197,952,306 - 97,952,708UniSTS
Cytogenetic Map11CUniSTS
UniSTS:236698  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381188,651,798 - 88,652,115UniSTSGRCm38
MGSCv371188,513,112 - 88,513,429UniSTSGRCm37
Celera1198,261,822 - 98,262,137UniSTS
Cytogenetic Map11CUniSTS
AI451722  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381188,341,085 - 88,341,228UniSTSGRCm38
MGSCv371188,154,587 - 88,154,730UniSTSGRCm37
Celera1197,953,454 - 97,953,597UniSTS
Cytogenetic Map11CUniSTS
Whitehead/MRC_RH111141.68UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001201341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001363194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001363195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001373923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_054043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011249302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011249304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011249305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001780073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003949528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004937056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_388550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_879764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEKQ02167679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK007122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK037452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK037632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK038120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK085831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK086558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK136156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL732539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC109368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC111809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BK001483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ174763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX572644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX664717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR405681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU405628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU406967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU442701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FP929013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HB886965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HC944374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000092794   ⟹   ENSMUSP00000090470
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1188,234,715 - 88,608,927 (-)Ensembl
GRCm38.p6 Ensembl1188,343,889 - 88,718,101 (-)Ensembl
Ensembl Acc Id: ENSMUST00000107908   ⟹   ENSMUSP00000103541
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1188,576,780 - 88,609,008 (-)Ensembl
GRCm38.p6 Ensembl1188,685,954 - 88,718,182 (-)Ensembl
Ensembl Acc Id: ENSMUST00000107909   ⟹   ENSMUSP00000103542
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1188,230,208 - 88,609,055 (-)Ensembl
GRCm38.p6 Ensembl1188,339,382 - 88,718,229 (-)Ensembl
Ensembl Acc Id: ENSMUST00000126293
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1188,603,014 - 88,609,038 (-)Ensembl
GRCm38.p6 Ensembl1188,712,188 - 88,718,212 (-)Ensembl
Ensembl Acc Id: ENSMUST00000138790
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1188,368,790 - 88,608,936 (-)Ensembl
GRCm38.p6 Ensembl1188,477,964 - 88,718,110 (-)Ensembl
Ensembl Acc Id: ENSMUST00000144699   ⟹   ENSMUSP00000119684
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1188,480,881 - 88,609,339 (-)Ensembl
GRCm38.p6 Ensembl1188,590,055 - 88,718,513 (-)Ensembl
Ensembl Acc Id: ENSMUST00000148013
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1188,256,341 - 88,480,973 (-)Ensembl
GRCm38.p6 Ensembl1188,365,515 - 88,590,147 (-)Ensembl
RefSeq Acc Id: NM_001201341   ⟹   NP_001188270
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,576,780 - 88,609,093 (-)NCBI
GRCm381188,685,954 - 88,718,267 (-)NCBI
Celera1197,951,761 - 98,327,494 (-)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001363194   ⟹   NP_001350123
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,230,208 - 88,609,093 (-)NCBI
GRCm381188,339,382 - 88,718,267 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001363195   ⟹   NP_001350124
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,230,208 - 88,609,093 (-)NCBI
GRCm381188,339,382 - 88,718,267 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001373923   ⟹   NP_001360852
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,230,208 - 88,609,103 (-)NCBI
GRCm381188,339,382 - 88,718,277 (-)NCBI
Sequence:
RefSeq Acc Id: NM_054043   ⟹   NP_473384
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,230,208 - 88,609,055 (-)NCBI
GRCm381188,339,382 - 88,718,229 (-)NCBI
MGSCv371188,152,884 - 88,403,661 (-)RGD
Celera1197,951,761 - 98,327,494 (-)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006534431   ⟹   XP_006534494
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,230,208 - 88,609,197 (-)NCBI
GRCm381188,339,382 - 88,718,306 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006534432   ⟹   XP_006534495
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,230,208 - 88,609,197 (-)NCBI
GRCm381188,339,382 - 88,718,306 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006534434   ⟹   XP_006534497
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,234,617 - 88,609,197 (-)NCBI
GRCm381188,343,791 - 88,718,306 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006534435   ⟹   XP_006534498
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,230,208 - 88,609,197 (-)NCBI
GRCm381188,339,382 - 88,718,306 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006534438   ⟹   XP_006534501
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,230,208 - 88,609,197 (-)NCBI
GRCm381188,339,382 - 88,718,306 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006534439   ⟹   XP_006534502
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,230,208 - 88,609,197 (-)NCBI
GRCm381188,339,382 - 88,718,306 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006534440   ⟹   XP_006534503
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,230,208 - 88,609,197 (-)NCBI
GRCm381188,339,382 - 88,718,306 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006534441   ⟹   XP_006534504
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,230,208 - 88,609,197 (-)NCBI
GRCm381188,344,450 - 88,718,306 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011249302   ⟹   XP_011247604
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,230,208 - 88,609,197 (-)NCBI
GRCm381188,339,382 - 88,718,306 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011249304   ⟹   XP_011247606
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,259,088 - 88,609,197 (-)NCBI
GRCm381188,368,276 - 88,718,306 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011249305   ⟹   XP_011247607
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,230,208 - 88,540,879 (-)NCBI
GRCm381188,339,382 - 88,645,036 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246417   ⟹   XP_030102277
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,230,208 - 88,535,747 (-)NCBI
GRCm381188,339,382 - 88,644,921 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246418   ⟹   XP_030102278
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,571,862 - 88,609,197 (-)NCBI
GRCm381188,681,036 - 88,718,306 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157062   ⟹   XP_036012955
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,230,549 - 88,609,197 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157063   ⟹   XP_036012956
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,230,549 - 88,609,197 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157064   ⟹   XP_036012957
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,230,208 - 88,609,197 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157065   ⟹   XP_036012958
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,230,208 - 88,609,197 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157066   ⟹   XP_036012959
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,230,208 - 88,508,520 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157067   ⟹   XP_036012960
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,230,208 - 88,508,499 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157068   ⟹   XP_036012961
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,230,549 - 88,609,197 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001780073
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,230,208 - 88,609,197 (-)NCBI
GRCm381188,339,382 - 88,718,306 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003949528
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,230,208 - 88,609,197 (-)NCBI
GRCm381188,339,382 - 88,718,306 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004937056
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,230,208 - 88,609,197 (-)NCBI
Sequence:
RefSeq Acc Id: XR_388550
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,230,208 - 88,609,197 (-)NCBI
GRCm381188,339,382 - 88,718,306 (-)NCBI
Sequence:
RefSeq Acc Id: XR_879764
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,230,208 - 88,609,197 (-)NCBI
GRCm381188,339,382 - 88,718,306 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001188270 (Get FASTA)   NCBI Sequence Viewer  
  NP_001350123 (Get FASTA)   NCBI Sequence Viewer  
  NP_001350124 (Get FASTA)   NCBI Sequence Viewer  
  NP_001360852 (Get FASTA)   NCBI Sequence Viewer  
  NP_473384 (Get FASTA)   NCBI Sequence Viewer  
  XP_006534494 (Get FASTA)   NCBI Sequence Viewer  
  XP_006534495 (Get FASTA)   NCBI Sequence Viewer  
  XP_006534497 (Get FASTA)   NCBI Sequence Viewer  
  XP_006534498 (Get FASTA)   NCBI Sequence Viewer  
  XP_006534501 (Get FASTA)   NCBI Sequence Viewer  
  XP_006534502 (Get FASTA)   NCBI Sequence Viewer  
  XP_006534503 (Get FASTA)   NCBI Sequence Viewer  
  XP_006534504 (Get FASTA)   NCBI Sequence Viewer  
  XP_011247604 (Get FASTA)   NCBI Sequence Viewer  
  XP_011247606 (Get FASTA)   NCBI Sequence Viewer  
  XP_011247607 (Get FASTA)   NCBI Sequence Viewer  
  XP_030102277 (Get FASTA)   NCBI Sequence Viewer  
  XP_030102278 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012955 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012956 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012957 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012958 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012959 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012960 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012961 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI09369 (Get FASTA)   NCBI Sequence Viewer  
  AAI11810 (Get FASTA)   NCBI Sequence Viewer  
  BAC27370 (Get FASTA)   NCBI Sequence Viewer  
  BAC33851 (Get FASTA)   NCBI Sequence Viewer  
  BAC33873 (Get FASTA)   NCBI Sequence Viewer  
  BAC34584 (Get FASTA)   NCBI Sequence Viewer  
  BAE22848 (Get FASTA)   NCBI Sequence Viewer  
  BAE32260 (Get FASTA)   NCBI Sequence Viewer  
  BAE41407 (Get FASTA)   NCBI Sequence Viewer  
  CBF67639 (Get FASTA)   NCBI Sequence Viewer  
  CBU92513 (Get FASTA)   NCBI Sequence Viewer  
  DAA01567 (Get FASTA)   NCBI Sequence Viewer  
  EDL15846 (Get FASTA)   NCBI Sequence Viewer  
  EDL15847 (Get FASTA)   NCBI Sequence Viewer  
  EDL15848 (Get FASTA)   NCBI Sequence Viewer  
  EDL15849 (Get FASTA)   NCBI Sequence Viewer  
  EDL15850 (Get FASTA)   NCBI Sequence Viewer  
  EDL15851 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000090470
  ENSMUSP00000090470.6
  ENSMUSP00000103541
  ENSMUSP00000103541.2
  ENSMUSP00000103542
  ENSMUSP00000103542.2
  ENSMUSP00000119684.2
GenBank Protein Q920Q6 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_473384   ⟸   NM_054043
- Peptide Label: isoform 1
- UniProtKB: Q8BQ90 (UniProtKB/Swiss-Prot),   Q920Q7 (UniProtKB/Swiss-Prot),   Q920Q6 (UniProtKB/Swiss-Prot),   Q3TE41 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001188270   ⟸   NM_001201341
- Peptide Label: isoform 2
- UniProtKB: B1AT13 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006534504   ⟸   XM_006534441
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_006534503   ⟸   XM_006534440
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006534502   ⟸   XM_006534439
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006534495   ⟸   XM_006534432
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006534498   ⟸   XM_006534435
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006534501   ⟸   XM_006534438
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006534497   ⟸   XM_006534434
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006534494   ⟸   XM_006534431
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011247604   ⟸   XM_011249302
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_011247607   ⟸   XM_011249305
- Peptide Label: isoform X18
- Sequence:
RefSeq Acc Id: XP_011247606   ⟸   XM_011249304
- Peptide Label: isoform X16
- Sequence:
RefSeq Acc Id: NP_001350124   ⟸   NM_001363195
- Peptide Label: isoform 4
- UniProtKB: Q2M2Q8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001350123   ⟸   NM_001363194
- Peptide Label: isoform 3
RefSeq Acc Id: XP_030102277   ⟸   XM_030246417
- Peptide Label: isoform X19
RefSeq Acc Id: XP_030102278   ⟸   XM_030246418
- Peptide Label: isoform X20
- UniProtKB: B1AT13 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001360852   ⟸   NM_001373923
- Peptide Label: isoform 5
Ensembl Acc Id: ENSMUSP00000119684   ⟸   ENSMUST00000144699
Ensembl Acc Id: ENSMUSP00000103542   ⟸   ENSMUST00000107909
Ensembl Acc Id: ENSMUSP00000103541   ⟸   ENSMUST00000107908
Ensembl Acc Id: ENSMUSP00000090470   ⟸   ENSMUST00000092794
RefSeq Acc Id: XP_036012958   ⟸   XM_036157065
- Peptide Label: isoform X13
RefSeq Acc Id: XP_036012957   ⟸   XM_036157064
- Peptide Label: isoform X12
RefSeq Acc Id: XP_036012959   ⟸   XM_036157066
- Peptide Label: isoform X14
RefSeq Acc Id: XP_036012960   ⟸   XM_036157067
- Peptide Label: isoform X15
RefSeq Acc Id: XP_036012961   ⟸   XM_036157068
- Peptide Label: isoform X17
RefSeq Acc Id: XP_036012956   ⟸   XM_036157063
- Peptide Label: isoform X11
RefSeq Acc Id: XP_036012955   ⟸   XM_036157062
- Peptide Label: isoform X9
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q920Q6-F1-model_v2 AlphaFold Q920Q6 1-346 view protein structure

Promoters
RGD ID:8676106
Promoter ID:EPDNEW_M16083
Type:initiation region
Name:Msi2_2
Description:Mus musculus musashi RNA-binding protein 2 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16084  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381188,366,961 - 88,367,021EPDNEW
RGD ID:6820329
Promoter ID:MM_KWN:9138
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung
Transcripts:ENSMUST00000093952,   ENSMUST00000107908,   ENSMUST00000107909,   LINCRNA_178,   NM_054043,   OTTMUST00000002490,   OTTMUST00000018476,   UC007KVN.1,   UC007KVO.1,   UC007KVQ.1,   UC007KVR.1,   UC007KVT.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361188,579,666 - 88,580,197 (+)MPROMDB
RGD ID:8676108
Promoter ID:EPDNEW_M16084
Type:initiation region
Name:Msi2_1
Description:Mus musculus musashi RNA-binding protein 2 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16083  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381188,718,267 - 88,718,327EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1923876 AgrOrtholog
Ensembl Genes ENSMUSG00000069769 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000092794 ENTREZGENE
  ENSMUST00000092794.12 UniProtKB/Swiss-Prot
  ENSMUST00000107908 ENTREZGENE
  ENSMUST00000107908.2 UniProtKB/TrEMBL
  ENSMUST00000107909 ENTREZGENE
  ENSMUST00000107909.8 UniProtKB/Swiss-Prot
  ENSMUST00000144699.8 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro MSI_RRM2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:76626 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1923876 ENTREZGENE
NCBI Gene 76626 ENTREZGENE
PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Msi2 PhenoGen
PROSITE RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B1AT10_MOUSE UniProtKB/TrEMBL
  B1AT13 ENTREZGENE, UniProtKB/TrEMBL
  MSI2H_MOUSE UniProtKB/Swiss-Prot
  Q2M2Q8 ENTREZGENE, UniProtKB/TrEMBL
  Q32LZ4_MOUSE UniProtKB/TrEMBL
  Q3TE41 ENTREZGENE, UniProtKB/TrEMBL
  Q3UWR6_MOUSE UniProtKB/TrEMBL
  Q8BQ90 ENTREZGENE
  Q920Q6 ENTREZGENE
  Q920Q7 ENTREZGENE
UniProt Secondary Q8BQ90 UniProtKB/Swiss-Prot
  Q920Q7 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-01-08 Msi2  musashi RNA-binding protein 2    Musashi homolog 2 (Drosophila)  Symbol and/or name change 5135510 APPROVED