MSI2 (musashi RNA binding protein 2) - Rat Genome Database

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Gene: MSI2 (musashi RNA binding protein 2) Homo sapiens
Analyze
Symbol: MSI2
Name: musashi RNA binding protein 2
RGD ID: 1352746
HGNC Page HGNC:18585
Description: Enables identical protein binding activity. Predicted to be involved in central nervous system development and regulation of translation. Located in cytosol and intracellular membrane-bounded organelle.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: FLJ36569; MGC3245; MSI2H; musashi homolog 2; musashi RNA-binding protein 2; musashi-2; RNA-binding protein Musashi homolog 2
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381757,255,851 - 57,701,581 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1757,255,851 - 57,684,689 (+)EnsemblGRCh38hg38GRCh38
GRCh371755,333,212 - 55,762,050 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361752,688,930 - 53,112,298 (+)NCBINCBI36Build 36hg18NCBI36
Build 341752,689,372 - 53,065,542NCBI
Celera1751,795,383 - 52,219,094 (+)NCBICelera
Cytogenetic Map17q22NCBI
HuRef1750,694,663 - 51,117,860 (+)NCBIHuRef
CHM1_11755,398,967 - 55,822,559 (+)NCBICHM1_1
T2T-CHM13v2.01758,130,926 - 58,574,836 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
1,4-dichlorobenzene  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2-methylcholine  (EXP)
4-hydroxyphenyl retinamide  (ISO)
acrolein  (EXP)
aflatoxin B1  (EXP,ISO)
Aflatoxin B2 alpha  (EXP)
all-trans-retinoic acid  (EXP)
alpha-pinene  (EXP)
antimycin A  (EXP)
aristolochic acid A  (EXP)
arsane  (EXP,ISO)
arsenic atom  (EXP,ISO)
arsenite(3-)  (EXP)
atrazine  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (EXP)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
cadmium atom  (EXP)
cadmium dichloride  (EXP)
carbon nanotube  (ISO)
CGP 52608  (EXP)
chloroprene  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) sulfate  (EXP)
CU-O LINKAGE  (EXP)
cyclosporin A  (EXP,ISO)
cylindrospermopsin  (EXP)
deguelin  (EXP)
dibenz[a,h]anthracene  (ISO)
dibutyl phthalate  (ISO)
diuron  (ISO)
dorsomorphin  (EXP)
doxorubicin  (EXP)
ethanol  (ISO)
ethyl methanesulfonate  (EXP)
fenpyroximate  (EXP)
folic acid  (ISO)
formaldehyde  (EXP)
fulvestrant  (EXP)
genistein  (EXP)
glycidyl methacrylate  (EXP)
hydrogen cyanide  (ISO)
hydrogen peroxide  (EXP)
lead diacetate  (ISO)
lead(0)  (ISO)
leflunomide  (EXP)
methoxychlor  (ISO)
methyl methanesulfonate  (EXP)
methylmercury chloride  (EXP)
milrinone  (ISO)
N,N-diethyl-m-toluamide  (ISO)
oxaliplatin  (ISO)
ozone  (EXP)
paracetamol  (EXP)
permethrin  (ISO)
phenylmercury acetate  (EXP)
picoxystrobin  (EXP)
pirinixic acid  (ISO)
potassium cyanide  (ISO)
pyrimidifen  (EXP)
rotenone  (ISO)
SB 431542  (EXP)
sodium arsenate  (ISO)
sodium arsenite  (EXP)
sodium dichromate  (ISO)
sunitinib  (EXP)
tebufenpyrad  (EXP)
testosterone  (EXP,ISO)
thifluzamide  (EXP)
titanium dioxide  (ISO)
topotecan  (ISO)
triadimefon  (ISO)
trichostatin A  (EXP)
troglitazone  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
vorinostat  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10737800   PMID:11588182   PMID:12477932   PMID:12649177   PMID:14702039   PMID:15489334   PMID:18815193   PMID:19738201   PMID:19913121   PMID:20000738   PMID:20020773   PMID:20379614  
PMID:20628086   PMID:20639863   PMID:20823875   PMID:20936779   PMID:21081503   PMID:21145461   PMID:21753187   PMID:21873635   PMID:22113197   PMID:22658674   PMID:22681889   PMID:22784712  
PMID:23233047   PMID:23667531   PMID:23759245   PMID:23870195   PMID:24002004   PMID:24076374   PMID:24305552   PMID:24332808   PMID:24457600   PMID:25090928   PMID:25363400   PMID:25380226  
PMID:25416956   PMID:25449073   PMID:25664853   PMID:25774828   PMID:25851660   PMID:25921289   PMID:26186194   PMID:26344197   PMID:26496610   PMID:26673327   PMID:26760575   PMID:26775684  
PMID:26777405   PMID:27025967   PMID:27059221   PMID:27092875   PMID:27121842   PMID:27160312   PMID:27274057   PMID:27322953   PMID:27449499   PMID:27593929   PMID:27600258   PMID:27721018  
PMID:27941885   PMID:28107692   PMID:28143872   PMID:28223335   PMID:28302793   PMID:28431233   PMID:28436985   PMID:28514442   PMID:28515276   PMID:28542303   PMID:28611215   PMID:28655764  
PMID:28712289   PMID:28866849   PMID:28912529   PMID:29054489   PMID:29093438   PMID:29298432   PMID:29395067   PMID:29641991   PMID:29762635   PMID:29802200   PMID:29845934   PMID:29911972  
PMID:29955894   PMID:30097032   PMID:30126842   PMID:30209976   PMID:30367664   PMID:30419948   PMID:30572598   PMID:30585266   PMID:30604502   PMID:30737405   PMID:30833792   PMID:31053152  
PMID:31066120   PMID:31253395   PMID:31532069   PMID:31586073   PMID:31603583   PMID:31692135   PMID:31738908   PMID:31822558   PMID:31833612   PMID:31878037   PMID:31888685   PMID:31957818  
PMID:32245259   PMID:32296183   PMID:32332729   PMID:32448269   PMID:32606289   PMID:32633342   PMID:32707033   PMID:32779876   PMID:32795589   PMID:32855391   PMID:32877691   PMID:33306668  
PMID:33504942   PMID:33609283   PMID:33731348   PMID:33961781   PMID:34133714   PMID:34145929   PMID:34237057   PMID:34309875   PMID:34578187   PMID:34581457   PMID:34650049   PMID:34768932  
PMID:35013218   PMID:35063084   PMID:35073459   PMID:35140242   PMID:35271311   PMID:35384245   PMID:35446349   PMID:35545536   PMID:35563538   PMID:35819319   PMID:35831314   PMID:35840700  
PMID:36167829   PMID:36215168   PMID:36244648   PMID:36345938   PMID:36543142   PMID:36596017   PMID:36604567   PMID:36736316   PMID:37481823   PMID:37801708   PMID:38347600  


Genomics

Comparative Map Data
MSI2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381757,255,851 - 57,701,581 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1757,255,851 - 57,684,689 (+)EnsemblGRCh38hg38GRCh38
GRCh371755,333,212 - 55,762,050 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361752,688,930 - 53,112,298 (+)NCBINCBI36Build 36hg18NCBI36
Build 341752,689,372 - 53,065,542NCBI
Celera1751,795,383 - 52,219,094 (+)NCBICelera
Cytogenetic Map17q22NCBI
HuRef1750,694,663 - 51,117,860 (+)NCBIHuRef
CHM1_11755,398,967 - 55,822,559 (+)NCBICHM1_1
T2T-CHM13v2.01758,130,926 - 58,574,836 (+)NCBIT2T-CHM13v2.0
Msi2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391188,230,208 - 88,609,197 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1188,230,208 - 88,609,339 (-)EnsemblGRCm39 Ensembl
GRCm381188,339,382 - 88,718,306 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1188,339,382 - 88,718,513 (-)EnsemblGRCm38mm10GRCm38
MGSCv371188,152,884 - 88,403,661 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361188,155,655 - 88,406,342 (-)NCBIMGSCv36mm8
Celera1197,951,761 - 98,327,496 (-)NCBICelera
Cytogenetic Map11CNCBI
cM Map1152.4NCBI
Msi2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81073,640,960 - 74,007,497 (-)NCBIGRCr8
mRatBN7.21073,143,760 - 73,510,566 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1073,147,380 - 73,510,157 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01075,673,840 - 76,040,106 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1075,681,393 - 76,039,964 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01074,071,835 - 74,435,491 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41076,776,415 - 77,149,277 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1072,051,638 - 72,417,027 (-)NCBICelera
Cytogenetic Map10q26NCBI
Msi2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554515,278,568 - 5,638,075 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554515,271,008 - 5,697,839 (-)NCBIChiLan1.0ChiLan1.0
MSI2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21973,431,449 - 73,859,482 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11778,242,455 - 78,670,376 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01751,335,550 - 51,763,572 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11756,194,337 - 56,621,330 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1756,194,360 - 56,613,698 (+)Ensemblpanpan1.1panPan2
MSI2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1932,017,951 - 32,409,457 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha931,257,115 - 31,645,725 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0932,825,471 - 33,214,836 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl932,825,157 - 33,214,400 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1931,611,023 - 31,999,606 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0931,894,294 - 32,282,733 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0931,977,953 - 32,366,683 (+)NCBIUU_Cfam_GSD_1.0
Msi2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560231,370,729 - 31,737,475 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364905,342,512 - 5,704,709 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364905,337,571 - 5,704,331 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MSI2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1233,537,196 - 33,975,548 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11233,537,163 - 33,974,845 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21234,609,449 - 34,637,812 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MSI2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11635,711,443 - 36,141,949 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1635,719,075 - 36,141,925 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660776,529,836 - 6,961,096 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Msi2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479512,230,802 - 12,596,419 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479512,230,756 - 12,603,360 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MSI2
48 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 17q21.33-24.2(chr17:36449220-68170214)x3 copy number gain See cases [RCV000050957] Chr17:36449220..68170214 [GRCh38]
Chr17:48563237..65936105 [GRCh37]
Chr17:45918236..63677950 [NCBI36]
Chr17:17q21.33-24.2
pathogenic
GRCh38/hg38 17q23.2-25.3(chr17:36449220-83086677)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052483]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052483]|See cases [RCV000052483] Chr17:36449220..83086677 [GRCh38]
Chr17:58617905..81044553 [GRCh37]
Chr17:55972687..78637842 [NCBI36]
Chr17:17q23.2-25.3
pathogenic
GRCh38/hg38 17q22(chr17:56958745-58171125)x1 copy number loss See cases [RCV000053434] Chr17:56958745..58171125 [GRCh38]
Chr17:55036106..56248486 [GRCh37]
Chr17:52391105..53603485 [NCBI36]
Chr17:17q22
pathogenic
NM_138962.2(MSI2):c.312+31566G>A single nucleotide variant Lung cancer [RCV000100565] Chr17:57293758 [GRCh38]
Chr17:55371119 [GRCh37]
Chr17:17q22
uncertain significance
NM_138962.2(MSI2):c.406-18640A>G single nucleotide variant Lung cancer [RCV000100566] Chr17:57511036 [GRCh38]
Chr17:55588397 [GRCh37]
Chr17:17q22
uncertain significance
NM_138962.2(MSI2):c.454+10123T>C single nucleotide variant Lung cancer [RCV000100567] Chr17:57539847 [GRCh38]
Chr17:55617208 [GRCh37]
Chr17:17q22
uncertain significance
GRCh38/hg38 17q23.1-25.1(chr17:36449220-75053130)x3 copy number gain See cases [RCV000137437] Chr17:36449220..75053130 [GRCh38]
Chr17:57595736..73049225 [GRCh37]
Chr17:54950518..70560820 [NCBI36]
Chr17:17q23.1-25.1
pathogenic
GRCh38/hg38 17q22(chr17:56683505-58084939)x1 copy number loss See cases [RCV000135409] Chr17:56683505..58084939 [GRCh38]
Chr17:54760866..56162300 [GRCh37]
Chr17:52115865..53517299 [NCBI36]
Chr17:17q22
pathogenic
GRCh38/hg38 17q22-23.1(chr17:57418806-59735464)x1 copy number loss See cases [RCV000140211] Chr17:57418806..59735464 [GRCh38]
Chr17:55496167..57812825 [GRCh37]
Chr17:52851166..55167607 [NCBI36]
Chr17:17q22-23.1
pathogenic
GRCh38/hg38 17q22(chr17:57458711-57486761)x1 copy number loss See cases [RCV000140222] Chr17:57458711..57486761 [GRCh38]
Chr17:55536072..55564122 [GRCh37]
Chr17:52891071..52919121 [NCBI36]
Chr17:17q22
likely benign
GRCh38/hg38 17q22(chr17:57347044-57486761)x1 copy number loss See cases [RCV000140289] Chr17:57347044..57486761 [GRCh38]
Chr17:55424405..55564122 [GRCh37]
Chr17:52779404..52919121 [NCBI36]
Chr17:17q22
likely benign
GRCh37/hg19 17q22(chr17:52189051-57477162)x3 copy number gain See cases [RCV000448801] Chr17:52189051..57477162 [GRCh37]
Chr17:17q22
pathogenic
GRCh37/hg19 17q21.33-23.2(chr17:49076980-58740945)x3 copy number gain See cases [RCV000448805] Chr17:49076980..58740945 [GRCh37]
Chr17:17q21.33-23.2
pathogenic
GRCh37/hg19 17q22(chr17:55368089-55509017)x1 copy number loss See cases [RCV000448181] Chr17:55368089..55509017 [GRCh37]
Chr17:17q22
uncertain significance
GRCh37/hg19 17q21.31-25.3(chr17:42580684-81085615)x3 copy number gain See cases [RCV000447823] Chr17:42580684..81085615 [GRCh37]
Chr17:17q21.31-25.3
pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:526-81041938) copy number gain See cases [RCV000511439] Chr17:526..81041938 [GRCh37]
Chr17:17p13.3-q25.3
pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:526-81041938)x3 copy number gain See cases [RCV000512441] Chr17:526..81041938 [GRCh37]
Chr17:17p13.3-q25.3
pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:12344-81057996)x3 copy number gain not provided [RCV000739325] Chr17:12344..81057996 [GRCh37]
Chr17:17p13.3-q25.3
pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:8547-81060040)x3 copy number gain not provided [RCV000739324] Chr17:8547..81060040 [GRCh37]
Chr17:17p13.3-q25.3
pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:7214-81058310)x3 copy number gain not provided [RCV000739320] Chr17:7214..81058310 [GRCh37]
Chr17:17p13.3-q25.3
pathogenic
GRCh37/hg19 17q22(chr17:55681549-55698233)x0 copy number loss not provided [RCV000752149] Chr17:55681549..55698233 [GRCh37]
Chr17:17q22
benign
GRCh37/hg19 17q22(chr17:55714826-55909984)x3 copy number gain not provided [RCV000848449] Chr17:55714826..55909984 [GRCh37]
Chr17:17q22
uncertain significance
GRCh37/hg19 17q22(chr17:55425668-55856050)x3 copy number gain not provided [RCV002473662] Chr17:55425668..55856050 [GRCh37]
Chr17:17q22
uncertain significance
GRCh37/hg19 17q22(chr17:55368089-55509017) copy number loss not specified [RCV002052599] Chr17:55368089..55509017 [GRCh37]
Chr17:17q22
uncertain significance
NC_000017.10:g.(?_54671585)_(59938900_?)dup duplication Familial aplasia of the vermis [RCV001923071] Chr17:54671585..59938900 [GRCh37]
Chr17:17q22-23.2
uncertain significance
NC_000017.10:g.(?_55442363)_(56309063_?)del deletion Intellectual disability [RCV003151461] Chr17:55442363..56309063 [GRCh37]
Chr17:17q22
pathogenic
GRCh37/hg19 17q22(chr17:55043662-56728123)x1 copy number loss See cases [RCV002292214] Chr17:55043662..56728123 [GRCh37]
Chr17:17q22
pathogenic
GRCh37/hg19 17q22(chr17:55356209-55680113)x3 copy number gain not provided [RCV002473588] Chr17:55356209..55680113 [GRCh37]
Chr17:17q22
uncertain significance
NM_138962.4(MSI2):c.868A>G (p.Ser290Gly) single nucleotide variant Inborn genetic diseases [RCV002990547] Chr17:57675049 [GRCh38]
Chr17:55752410 [GRCh37]
Chr17:17q22
uncertain significance
NM_138962.4(MSI2):c.425T>C (p.Met142Thr) single nucleotide variant Inborn genetic diseases [RCV002728838] Chr17:57529695 [GRCh38]
Chr17:55607056 [GRCh37]
Chr17:17q22
uncertain significance
NM_138962.4(MSI2):c.931G>A (p.Gly311Ser) single nucleotide variant Inborn genetic diseases [RCV002739286] Chr17:57675112 [GRCh38]
Chr17:55752473 [GRCh37]
Chr17:17q22
uncertain significance
NM_138962.4(MSI2):c.527A>G (p.Asn176Ser) single nucleotide variant Inborn genetic diseases [RCV002998556] Chr17:57596940 [GRCh38]
Chr17:55674301 [GRCh37]
Chr17:17q22
uncertain significance
NM_138962.4(MSI2):c.859G>A (p.Gly287Ser) single nucleotide variant Inborn genetic diseases [RCV002763239] Chr17:57675040 [GRCh38]
Chr17:55752401 [GRCh37]
Chr17:17q22
uncertain significance
NM_138962.4(MSI2):c.887G>A (p.Gly296Glu) single nucleotide variant Inborn genetic diseases [RCV002803420] Chr17:57675068 [GRCh38]
Chr17:55752429 [GRCh37]
Chr17:17q22
uncertain significance
NM_138962.4(MSI2):c.115G>A (p.Asp39Asn) single nucleotide variant Inborn genetic diseases [RCV003205624] Chr17:57257477 [GRCh38]
Chr17:55334838 [GRCh37]
Chr17:17q22
uncertain significance
NM_138962.4(MSI2):c.385T>C (p.Tyr129His) single nucleotide variant not provided [RCV003456589] Chr17:57401451 [GRCh38]
Chr17:55478812 [GRCh37]
Chr17:17q22
uncertain significance
miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
MIR155hsa-miR-155-5pMirtarbaseexternal_infoWestern blotNon-Functional MTI20584899

Predicted Target Of
Summary Value
Count of predictions:7405
Count of miRNA genes:1473
Interacting mature miRNAs:2025
Transcripts:ENST00000284073, ENST00000322684, ENST00000416426, ENST00000442934, ENST00000577241, ENST00000579180, ENST00000579205, ENST00000579466, ENST00000579483, ENST00000579505, ENST00000579531, ENST00000579590, ENST00000581523, ENST00000581776, ENST00000582453, ENST00000582772, ENST00000583705, ENST00000583821, ENST00000584476
Prediction methods:Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D17S1853  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371755,584,509 - 55,584,663UniSTSGRCh37
Build 361752,939,508 - 52,939,662RGDNCBI36
Celera1752,046,019 - 52,046,160RGD
Cytogenetic Map17q22UniSTS
HuRef1750,944,833 - 50,944,974UniSTS
Marshfield Genetic Map1780.38RGD
Marshfield Genetic Map1780.38UniSTS
Genethon Genetic Map1781.6UniSTS
D17S666  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371755,527,591 - 55,527,765UniSTSGRCh37
Celera1751,989,106 - 51,989,280UniSTS
Cytogenetic Map17q22UniSTS
HuRef1750,887,921 - 50,888,075UniSTS
Marshfield Genetic Map1782.0RGD
Marshfield Genetic Map1782.0UniSTS
D17S1160  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371755,641,002 - 55,641,208UniSTSGRCh37
Build 361752,996,001 - 52,996,207RGDNCBI36
Celera1752,102,802 - 52,103,008RGD
Cytogenetic Map17q22UniSTS
HuRef1751,001,611 - 51,001,817UniSTS
Marshfield Genetic Map1780.38UniSTS
Marshfield Genetic Map1780.38RGD
deCODE Assembly Map1787.54UniSTS
D17S1606  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371755,603,685 - 55,603,845UniSTSGRCh37
Build 361752,958,684 - 52,958,844RGDNCBI36
Celera1752,065,179 - 52,065,347RGD
Cytogenetic Map17q22UniSTS
HuRef1750,963,991 - 50,964,159UniSTS
Marshfield Genetic Map1780.38RGD
Marshfield Genetic Map1780.38UniSTS
Genethon Genetic Map1781.5UniSTS
D17S957  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371755,473,729 - 55,473,856UniSTSGRCh37
GRCh371755,473,708 - 55,473,851UniSTSGRCh37
Build 361752,828,728 - 52,828,855RGDNCBI36
Celera1751,935,236 - 51,935,365RGD
Celera1751,935,215 - 51,935,360UniSTS
Cytogenetic Map17q22UniSTS
HuRef1750,834,048 - 50,834,193UniSTS
HuRef1750,834,069 - 50,834,198UniSTS
Marshfield Genetic Map1780.38RGD
Marshfield Genetic Map1780.38UniSTS
Genethon Genetic Map1781.7UniSTS
TNG Radiation Hybrid Map173345.0UniSTS
deCODE Assembly Map1787.36UniSTS
Whitehead-YAC Contig Map17 UniSTS
D17S1605  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371755,541,189 - 55,541,438UniSTSGRCh37
Build 361752,896,188 - 52,896,437RGDNCBI36
Celera1752,002,698 - 52,002,945RGD
Cytogenetic Map17q22UniSTS
HuRef1750,901,491 - 50,901,738UniSTS
Marshfield Genetic Map1782.56UniSTS
Marshfield Genetic Map1782.56RGD
Genethon Genetic Map1784.0UniSTS
deCODE Assembly Map1787.36UniSTS
RH78952  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371755,757,323 - 55,757,490UniSTSGRCh37
Build 361753,112,322 - 53,112,489RGDNCBI36
Celera1752,219,119 - 52,219,286RGD
Cytogenetic Map17q22UniSTS
HuRef1751,117,885 - 51,118,052UniSTS
GeneMap99-GB4 RH Map17368.02UniSTS
WI-17928  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371755,659,222 - 55,659,349UniSTSGRCh37
Build 361753,014,221 - 53,014,348RGDNCBI36
Celera1752,121,021 - 52,121,148RGD
Cytogenetic Map17q22UniSTS
HuRef1751,019,832 - 51,019,959UniSTS
GeneMap99-GB4 RH Map17369.83UniSTS
Whitehead-RH Map17424.2UniSTS
RH91828  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371755,710,460 - 55,710,591UniSTSGRCh37
Build 361753,065,459 - 53,065,590RGDNCBI36
Celera1752,172,257 - 52,172,388RGD
Cytogenetic Map17q22UniSTS
HuRef1751,071,019 - 51,071,150UniSTS
G60401  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371755,541,161 - 55,541,436UniSTSGRCh37
Build 361752,896,160 - 52,896,435RGDNCBI36
Celera1752,002,670 - 52,002,943RGD
Cytogenetic Map17q22UniSTS
HuRef1750,901,463 - 50,901,736UniSTS
TNG Radiation Hybrid Map333143.0UniSTS
D17S890  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371755,517,724 - 55,517,907UniSTSGRCh37
Build 361752,872,723 - 52,872,906RGDNCBI36
Celera1751,979,243 - 51,979,422RGD
Cytogenetic Map17q22UniSTS
HuRef1750,878,058 - 50,878,237UniSTS
SHGC-142480  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371755,601,970 - 55,602,255UniSTSGRCh37
Build 361752,956,969 - 52,957,254RGDNCBI36
Celera1752,063,464 - 52,063,749RGD
Cytogenetic Map17q22UniSTS
HuRef1750,962,276 - 50,962,561UniSTS
SHGC-148302  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371755,403,504 - 55,403,791UniSTSGRCh37
Build 361752,758,503 - 52,758,790RGDNCBI36
Celera1751,864,955 - 51,865,242RGD
Cytogenetic Map17q22UniSTS
HuRef1750,763,774 - 50,764,061UniSTS
TNG Radiation Hybrid Map173390.0UniSTS
SHGC-144556  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371755,573,176 - 55,573,463UniSTSGRCh37
Build 361752,928,175 - 52,928,462RGDNCBI36
Celera1752,034,687 - 52,034,974RGD
Cytogenetic Map17q22UniSTS
HuRef1750,933,486 - 50,933,773UniSTS
G65557  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371755,363,641 - 55,363,933UniSTSGRCh37
Build 361752,718,640 - 52,718,932RGDNCBI36
Celera1751,825,109 - 51,825,401RGD
Cytogenetic Map17q22UniSTS
HuRef1750,723,934 - 50,724,226UniSTS
MSI2_1543  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371755,710,006 - 55,710,657UniSTSGRCh37
Build 361753,065,005 - 53,065,656RGDNCBI36
Celera1752,171,803 - 52,172,454RGD
HuRef1751,070,565 - 51,071,216UniSTS
RH45027  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371755,699,789 - 55,699,977UniSTSGRCh37
Build 361753,054,788 - 53,054,976RGDNCBI36
Celera1752,161,585 - 52,161,773RGD
Cytogenetic Map17q22UniSTS
HuRef1751,060,347 - 51,060,535UniSTS
GeneMap99-GB4 RH Map17368.02UniSTS
STS-H84456  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371755,506,766 - 55,506,927UniSTSGRCh37
Build 361752,861,765 - 52,861,926RGDNCBI36
Celera1751,968,282 - 51,968,443RGD
Cytogenetic Map17q22UniSTS
HuRef1750,867,097 - 50,867,258UniSTS
GeneMap99-GB4 RH Map17368.02UniSTS
D17S1153  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371755,527,596 - 55,527,773UniSTSGRCh37
Build 361752,882,595 - 52,882,772RGDNCBI36
Celera1751,989,111 - 51,989,288RGD
Cytogenetic Map17q22UniSTS
HuRef1750,887,926 - 50,888,083UniSTS
SGC30816  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371755,363,628 - 55,363,777UniSTSGRCh37
Build 361752,718,627 - 52,718,776RGDNCBI36
Celera1751,825,096 - 51,825,245RGD
Cytogenetic Map17q22UniSTS
HuRef1750,723,921 - 50,724,070UniSTS
GeneMap99-GB4 RH Map17369.78UniSTS
Whitehead-RH Map17416.8UniSTS
RH12431  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371755,626,789 - 55,626,943UniSTSGRCh37
Build 361752,981,788 - 52,981,942RGDNCBI36
Celera1752,088,589 - 52,088,743RGD
Cytogenetic Map17q22UniSTS
HuRef1750,987,398 - 50,987,552UniSTS
GeneMap99-GB4 RH Map17368.02UniSTS
STS-H08804  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371755,355,616 - 55,355,767UniSTSGRCh37
Build 361752,710,615 - 52,710,766RGDNCBI36
Celera1751,817,074 - 51,817,225RGD
Cytogenetic Map17q22UniSTS
Cytogenetic Map17q23.2UniSTS
HuRef1750,715,898 - 50,716,049UniSTS
GeneMap99-GB4 RH Map17368.02UniSTS
D16S325  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9q34.13UniSTS
Cytogenetic Map9q22.33UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map4q21.1UniSTS
Cytogenetic Map6q25.3UniSTS
Cytogenetic Map2q32.3UniSTS
Cytogenetic Map6q22UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map17q21.2-q21.3UniSTS
Cytogenetic Map13q14.3UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map2q33.3UniSTS
Cytogenetic Map20q13.32UniSTS
Cytogenetic Map1p21.2UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map12q13.2UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map12p13.32UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map8q22.3UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map1p13.1UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map4q25UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map7p22.2UniSTS
Cytogenetic Map7q33UniSTS
Cytogenetic Map1p31.3UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map6q13UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map10q11.2UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map3q13.32UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map6p22.3UniSTS
Cytogenetic Map12q22UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map3q22.1UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map6q25.2-q25.3UniSTS
Cytogenetic Map1p36.1UniSTS
Cytogenetic Map22q11.2UniSTS
Cytogenetic Map3q26.31UniSTS
Cytogenetic Map7p12.3UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map5p12UniSTS
Cytogenetic Map9q21.13UniSTS
Cytogenetic Map17q21.33UniSTS
Cytogenetic Map20p12.3-p11.21UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map2p13-p12UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map3q25.33UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic Map8q21.13UniSTS
Cytogenetic Map7q32.1UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map3p24.2UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic MapXp22.33UniSTS
Cytogenetic MapYp11.32UniSTS
Cytogenetic Map10q24.31UniSTS
Cytogenetic Map4q34.3UniSTS
Cytogenetic Map10p11.23UniSTS
Cytogenetic Map10p15.1UniSTS
Cytogenetic Map14q21.2UniSTS
Cytogenetic Map6p21.31UniSTS
Cytogenetic Map9p24.1-p23UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map10pter-q25.3UniSTS
Cytogenetic Map6q25.2-q27UniSTS
Cytogenetic Map15q26.3UniSTS
Cytogenetic Map15q14UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map11p11.2UniSTS
Cytogenetic Map17q21.32UniSTS
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map7p21.1UniSTS
Cytogenetic Map17q23.2UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic Map1p36.3-p34.3UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map4p15.2UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map2q24.3UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map6q27UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map15q11.2UniSTS
Cytogenetic Map6p21.33UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map2q12.2UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map3p26UniSTS
Cytogenetic MapXq28UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map10q21-q22UniSTS
Cytogenetic Map5q22UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map10q22.2UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map12q14.2UniSTS
Cytogenetic Map11q22.3UniSTS
Cytogenetic Map10q26.11UniSTS
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map6q22.32UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map17p13.1UniSTS
Cytogenetic Map12q23.3UniSTS
Cytogenetic Map3q21UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map7q36UniSTS
Cytogenetic Map4q26UniSTS
Cytogenetic Map19qterUniSTS
Cytogenetic Map7p13-p12UniSTS
Cytogenetic Map2p22UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map19q13.4UniSTS
D1S1425  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map1p33UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map1p31.3UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map6q25.3UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map4q21.23UniSTS
Cytogenetic Map22q12.1UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map1q23.1UniSTS
Cytogenetic Map10q22UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map10p14UniSTS
Cytogenetic Map6p21.33UniSTS
Cytogenetic Map10q26.3UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map7p22.2UniSTS
Cytogenetic Map12q13.12UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map14q32.12UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map18p11.31UniSTS
Cytogenetic Map13q34UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map8q12.1UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map10p12UniSTS
Cytogenetic Map12q13UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map8q24UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map3q26.2UniSTS
Cytogenetic Map6q25.2-q25.3UniSTS
Cytogenetic Map20q11.2-q13.2UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map1q21-q23UniSTS
Cytogenetic Map17q21.32UniSTS
Cytogenetic Map1p35.3UniSTS
Cytogenetic Map1p12UniSTS
Cytogenetic Map2p23-p22UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map16q12.1UniSTS
Cytogenetic Map17q22-q23UniSTS
Cytogenetic Map2p11.1UniSTS
Cytogenetic Map16q12.2UniSTS
Cytogenetic Map2p12-p11.2UniSTS
Cytogenetic Map3q11.1UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic Map17q11.2-q12UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map1p32-p31UniSTS
Cytogenetic Map1p21.3UniSTS
Cytogenetic Map1q32.2UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map7q21-q22UniSTS
Cytogenetic Map1q25.3UniSTS
Cytogenetic Map18p11.3-p11.2UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map21p11.1UniSTS
Cytogenetic Map12q24.31-q24.32UniSTS
Cytogenetic Map9q33.2UniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map12p12.2-p11.2UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map19p13.3-p13.2UniSTS
Cytogenetic Map7q32.1UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map17q22-q23.2UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map4q21.21UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map14q24.2UniSTS
Cytogenetic Map20q13.33UniSTS
Cytogenetic Map3p21UniSTS
Cytogenetic Map10p11.23UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map18q12.1UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map15q23UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map13q12.11UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map3q21.1UniSTS
Cytogenetic Map12p12UniSTS
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic MapXq12-q13UniSTS
Cytogenetic Map22q11.2UniSTS
Cytogenetic Map7q31.1-q31.3UniSTS
Cytogenetic MapXp22.11UniSTS
Cytogenetic Map3p21.1-p14.2UniSTS
Cytogenetic Map2p24UniSTS
Cytogenetic Map20p12.1UniSTS
Cytogenetic Map3q26.33UniSTS
Cytogenetic Map12q13.11-q14.3UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map9q21.33UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic MapXq13-q21UniSTS
Cytogenetic Map8q24.22UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map6q25.2-q27UniSTS
Cytogenetic Map12q24.32UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map12q23-q24.1UniSTS
Cytogenetic Map4q35.1UniSTS
Cytogenetic Map17q24.1UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map14q21UniSTS
Cytogenetic Map9p24.3UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map2p14UniSTS
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map2q12.3UniSTS
Cytogenetic Map8p21.1UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map3q25.33UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map1p34UniSTS
Cytogenetic Map19p13.1UniSTS
Cytogenetic Map5q14.1UniSTS
Cytogenetic MapXq22.3UniSTS
Cytogenetic Map7p21.1UniSTS
Cytogenetic Map6p25.2UniSTS
Cytogenetic Map10q23.33UniSTS
Cytogenetic Map15q11-q12UniSTS
Cytogenetic Map3p22.2UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map15q21.1-q21.2UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map4q13.3UniSTS
Cytogenetic Map19p13.13UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map17q24.3UniSTS
Cytogenetic Map12p13.33UniSTS
Cytogenetic Map11q14.1UniSTS
Cytogenetic Map3p22-p21.3UniSTS
Cytogenetic Map16q22.3UniSTS
Cytogenetic Map1p22.1UniSTS
Cytogenetic Map6p12.1UniSTS
Cytogenetic Map19q13.33-q13.41UniSTS
Cytogenetic Map2p25.3UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map5p12UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map7q35UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map7q11.1UniSTS
Cytogenetic Map2p25.1-p24.1UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map4q31.21UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic MapXq22.1UniSTS
Cytogenetic Map9q21.11UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map1p22.2UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map12q24UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic Map1q24.2UniSTS
Cytogenetic Map22q13.31UniSTS
Cytogenetic Map8p11.23UniSTS
Cytogenetic Map1q23.3UniSTS
Cytogenetic Map16p12UniSTS
Cytogenetic Map10p15-p14UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map1q22-q23UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map7q31UniSTS
Cytogenetic Map10q26UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map6p22.3UniSTS
Cytogenetic Map6p21.2UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic MapXq28UniSTS
Cytogenetic Map1p33-p32UniSTS
Cytogenetic Map5q35.2UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map12q24.33UniSTS
Cytogenetic Map3q26.1-q26.2UniSTS
Cytogenetic Map12p13UniSTS
Cytogenetic Map7q36.1UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic Map12q13.1-q13.2UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map16p12.3UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map9p13.2UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map3q13.2UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map1q42.3UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map20q11.21UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map6q15UniSTS
Cytogenetic Map6q22.32UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map16p13.11UniSTS
Cytogenetic Map10q24.32UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map18q11.1UniSTS
Cytogenetic Map16q23.2UniSTS
Cytogenetic Map3q12.1UniSTS
Cytogenetic Map15q24-q25UniSTS
Cytogenetic Map7q31.1UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map8q13.1UniSTS
Cytogenetic Map6pter-p12.1UniSTS
Cytogenetic Map6q16UniSTS
Cytogenetic Map12q14.1UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map9q22.2UniSTS
Cytogenetic Map17q23.2UniSTS
Cytogenetic Map11q23.1-q23.2UniSTS
Cytogenetic Map13q14UniSTS
Cytogenetic Map4q23UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map11q24.3UniSTS
Cytogenetic Map7p14UniSTS
Cytogenetic Map15q24.1UniSTS
Cytogenetic Map16q24.2UniSTS
Cytogenetic Map12q13.11UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map8q22.1UniSTS
Cytogenetic Map6q16.2UniSTS
Cytogenetic Map5p15.2UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic Map14q22.3UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map12q13.2UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map5q23.3-q31.1UniSTS
Cytogenetic Map1p36UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map12p13.31UniSTS
Cytogenetic Map3q12.3UniSTS
Cytogenetic Map11q23UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map20q11UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map1q42UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map12q24.13UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map14q21.3UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map20q13.32UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic MapXq21.1UniSTS
D17S957  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17q22UniSTS
TNG Radiation Hybrid Map173345.0UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 1595 1321 1287 181 1026 38 1805 1788 2990 291 1202 1198 148 91 1357 2
Low 844 1670 437 440 924 425 2551 408 743 126 258 414 27 1 1113 1431 3 1
Below cutoff 2 3 2 1 1 2 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001322250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001322251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_138962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_170721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005257014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005257015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011524286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011524287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017024147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017024148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017024149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047435311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047435312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047435313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047435314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047435315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047435316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054314981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054314982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054314983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054314984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054314985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054314986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC005325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC007431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC015883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC091181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI416968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI798817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK093888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK295060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK297295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC001526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC017560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC035768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE836557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX647282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX647939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HB886953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HC944362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KT584801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000284073   ⟹   ENSP00000284073
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1757,256,523 - 57,684,689 (+)Ensembl
RefSeq Acc Id: ENST00000322684   ⟹   ENSP00000313616
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1757,257,013 - 57,632,900 (+)Ensembl
RefSeq Acc Id: ENST00000416426   ⟹   ENSP00000414671
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1757,255,851 - 57,680,121 (+)Ensembl
RefSeq Acc Id: ENST00000442934   ⟹   ENSP00000392607
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1757,285,844 - 57,680,297 (+)Ensembl
RefSeq Acc Id: ENST00000577241
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1757,596,903 - 57,616,631 (+)Ensembl
RefSeq Acc Id: ENST00000579180   ⟹   ENSP00000462264
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1757,294,685 - 57,632,905 (+)Ensembl
RefSeq Acc Id: ENST00000579205
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1757,406,812 - 57,627,302 (+)Ensembl
RefSeq Acc Id: ENST00000579466
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1757,671,474 - 57,675,056 (+)Ensembl
RefSeq Acc Id: ENST00000579483
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1757,262,115 - 57,268,550 (+)Ensembl
RefSeq Acc Id: ENST00000579505
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1757,440,690 - 57,675,059 (+)Ensembl
RefSeq Acc Id: ENST00000579531
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1757,257,042 - 57,274,433 (+)Ensembl
RefSeq Acc Id: ENST00000579590   ⟹   ENSP00000462914
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1757,257,018 - 57,432,614 (+)Ensembl
RefSeq Acc Id: ENST00000581523
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1757,256,743 - 57,274,489 (+)Ensembl
RefSeq Acc Id: ENST00000581776   ⟹   ENSP00000463227
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1757,256,740 - 57,365,021 (+)Ensembl
RefSeq Acc Id: ENST00000582453
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1757,256,774 - 57,565,995 (+)Ensembl
RefSeq Acc Id: ENST00000582772
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1757,444,487 - 57,596,950 (+)Ensembl
RefSeq Acc Id: ENST00000583705
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1757,625,572 - 57,633,183 (+)Ensembl
RefSeq Acc Id: ENST00000583821
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1757,626,915 - 57,631,949 (+)Ensembl
RefSeq Acc Id: ENST00000584476
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1757,257,124 - 57,262,433 (+)Ensembl
RefSeq Acc Id: ENST00000674522   ⟹   ENSP00000501836
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1757,674,972 - 57,684,689 (+)Ensembl
RefSeq Acc Id: ENST00000674574   ⟹   ENSP00000502773
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1757,529,676 - 57,596,950 (+)Ensembl
RefSeq Acc Id: ENST00000674898   ⟹   ENSP00000502212
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1757,487,061 - 57,633,160 (+)Ensembl
RefSeq Acc Id: ENST00000674961   ⟹   ENSP00000501981
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1757,256,759 - 57,633,160 (+)Ensembl
RefSeq Acc Id: ENST00000674964   ⟹   ENSP00000502137
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1757,256,543 - 57,684,689 (+)Ensembl
RefSeq Acc Id: ENST00000675127   ⟹   ENSP00000502546
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1757,652,099 - 57,677,059 (+)Ensembl
RefSeq Acc Id: ENST00000675379   ⟹   ENSP00000502532
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1757,652,099 - 57,684,689 (+)Ensembl
RefSeq Acc Id: ENST00000675656   ⟹   ENSP00000501595
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1757,256,782 - 57,680,738 (+)Ensembl
RefSeq Acc Id: ENST00000675822   ⟹   ENSP00000502227
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1757,262,151 - 57,401,471 (+)Ensembl
RefSeq Acc Id: ENST00000676073   ⟹   ENSP00000502813
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1757,257,098 - 57,401,471 (+)Ensembl
RefSeq Acc Id: ENST00000676105   ⟹   ENSP00000502565
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1757,257,098 - 57,262,192 (+)Ensembl
RefSeq Acc Id: ENST00000676345
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1757,524,309 - 57,529,724 (+)Ensembl
RefSeq Acc Id: NM_001322250   ⟹   NP_001309179
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381757,255,851 - 57,684,689 (+)NCBI
CHM1_11755,398,287 - 55,827,320 (+)NCBI
T2T-CHM13v2.01758,130,926 - 58,557,947 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001322251   ⟹   NP_001309180
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381757,256,523 - 57,633,183 (+)NCBI
CHM1_11755,398,967 - 55,775,829 (+)NCBI
T2T-CHM13v2.01758,131,598 - 58,506,447 (+)NCBI
Sequence:
RefSeq Acc Id: NM_138962   ⟹   NP_620412
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381757,256,523 - 57,684,689 (+)NCBI
GRCh371755,333,931 - 55,762,050 (+)NCBI
Build 361752,688,930 - 53,112,298 (+)NCBI Archive
Celera1751,795,383 - 52,219,094 (+)RGD
HuRef1750,694,663 - 51,117,860 (+)RGD
CHM1_11755,398,967 - 55,827,320 (+)NCBI
T2T-CHM13v2.01758,131,598 - 58,557,947 (+)NCBI
Sequence:
RefSeq Acc Id: NM_170721   ⟹   NP_733839
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381757,257,019 - 57,633,183 (+)NCBI
GRCh371755,333,931 - 55,762,050 (+)NCBI
Build 361752,689,373 - 53,065,543 (+)NCBI Archive
Celera1751,795,383 - 52,219,094 (+)RGD
HuRef1750,694,663 - 51,117,860 (+)RGD
CHM1_11755,399,420 - 55,775,829 (+)NCBI
T2T-CHM13v2.01758,132,094 - 58,506,447 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005257015   ⟹   XP_005257072
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381757,256,523 - 57,684,689 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017024148   ⟹   XP_016879637
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381757,256,523 - 57,669,928 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047435311   ⟹   XP_047291267
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381757,256,523 - 57,684,689 (+)NCBI
RefSeq Acc Id: XM_047435312   ⟹   XP_047291268
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381757,256,523 - 57,684,689 (+)NCBI
RefSeq Acc Id: XM_047435313   ⟹   XP_047291269
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381757,256,523 - 57,701,581 (+)NCBI
RefSeq Acc Id: XM_047435314   ⟹   XP_047291270
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381757,256,523 - 57,701,581 (+)NCBI
RefSeq Acc Id: XM_047435315   ⟹   XP_047291271
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381757,487,162 - 57,684,689 (+)NCBI
RefSeq Acc Id: XM_047435316   ⟹   XP_047291272
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381757,487,162 - 57,684,689 (+)NCBI
RefSeq Acc Id: XM_054314981   ⟹   XP_054170956
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01758,131,598 - 58,557,947 (+)NCBI
RefSeq Acc Id: XM_054314982   ⟹   XP_054170957
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01758,131,598 - 58,557,947 (+)NCBI
RefSeq Acc Id: XM_054314983   ⟹   XP_054170958
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01758,131,598 - 58,557,947 (+)NCBI
RefSeq Acc Id: XM_054314984   ⟹   XP_054170959
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01758,131,598 - 58,543,184 (+)NCBI
RefSeq Acc Id: XM_054314985   ⟹   XP_054170960
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01758,131,598 - 58,574,836 (+)NCBI
RefSeq Acc Id: XM_054314986   ⟹   XP_054170961
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01758,131,598 - 58,574,836 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001309179 (Get FASTA)   NCBI Sequence Viewer  
  NP_001309180 (Get FASTA)   NCBI Sequence Viewer  
  NP_620412 (Get FASTA)   NCBI Sequence Viewer  
  NP_733839 (Get FASTA)   NCBI Sequence Viewer  
  XP_005257072 (Get FASTA)   NCBI Sequence Viewer  
  XP_016879637 (Get FASTA)   NCBI Sequence Viewer  
  XP_047291267 (Get FASTA)   NCBI Sequence Viewer  
  XP_047291268 (Get FASTA)   NCBI Sequence Viewer  
  XP_047291269 (Get FASTA)   NCBI Sequence Viewer  
  XP_047291270 (Get FASTA)   NCBI Sequence Viewer  
  XP_047291271 (Get FASTA)   NCBI Sequence Viewer  
  XP_047291272 (Get FASTA)   NCBI Sequence Viewer  
  XP_054170956 (Get FASTA)   NCBI Sequence Viewer  
  XP_054170957 (Get FASTA)   NCBI Sequence Viewer  
  XP_054170958 (Get FASTA)   NCBI Sequence Viewer  
  XP_054170959 (Get FASTA)   NCBI Sequence Viewer  
  XP_054170960 (Get FASTA)   NCBI Sequence Viewer  
  XP_054170961 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH01526 (Get FASTA)   NCBI Sequence Viewer  
  AAH17560 (Get FASTA)   NCBI Sequence Viewer  
  BAC04244 (Get FASTA)   NCBI Sequence Viewer  
  BAG58109 (Get FASTA)   NCBI Sequence Viewer  
  BAG59763 (Get FASTA)   NCBI Sequence Viewer  
  CBF67633 (Get FASTA)   NCBI Sequence Viewer  
  CBU92507 (Get FASTA)   NCBI Sequence Viewer  
  EAW94506 (Get FASTA)   NCBI Sequence Viewer  
  EAW94507 (Get FASTA)   NCBI Sequence Viewer  
  EAW94508 (Get FASTA)   NCBI Sequence Viewer  
  EAW94509 (Get FASTA)   NCBI Sequence Viewer  
  EAW94510 (Get FASTA)   NCBI Sequence Viewer  
  EAW94511 (Get FASTA)   NCBI Sequence Viewer  
  EAW94512 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000284073
  ENSP00000284073.2
  ENSP00000313616
  ENSP00000313616.3
  ENSP00000392607.2
  ENSP00000414671
  ENSP00000414671.2
  ENSP00000462264.1
  ENSP00000462914.1
  ENSP00000463227.1
  ENSP00000501595.1
  ENSP00000501836.1
  ENSP00000501981.1
  ENSP00000502137.1
  ENSP00000502212.1
  ENSP00000502227.1
  ENSP00000502532.1
  ENSP00000502546.1
  ENSP00000502565.1
  ENSP00000502773.1
  ENSP00000502813.1
GenBank Protein Q96DH6 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_733839   ⟸   NM_170721
- Peptide Label: isoform b
- UniProtKB: Q96DH6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_620412   ⟸   NM_138962
- Peptide Label: isoform a
- UniProtKB: Q7Z6M7 (UniProtKB/Swiss-Prot),   Q8N9T4 (UniProtKB/Swiss-Prot),   Q96DH6 (UniProtKB/Swiss-Prot),   A0A6Q8PF05 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005257072   ⟸   XM_005257015
- Peptide Label: isoform X1
- UniProtKB: A0A6Q8PF05 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001309179   ⟸   NM_001322250
- Peptide Label: isoform c
- UniProtKB: B4DHE8 (UniProtKB/TrEMBL),   A0A6Q8PF05 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001309180   ⟸   NM_001322251
- Peptide Label: isoform d
- Sequence:
RefSeq Acc Id: XP_016879637   ⟸   XM_017024148
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSP00000463227   ⟸   ENST00000581776
RefSeq Acc Id: ENSP00000313616   ⟸   ENST00000322684
RefSeq Acc Id: ENSP00000284073   ⟸   ENST00000284073
RefSeq Acc Id: ENSP00000414671   ⟸   ENST00000416426
RefSeq Acc Id: ENSP00000392607   ⟸   ENST00000442934
RefSeq Acc Id: ENSP00000462264   ⟸   ENST00000579180
RefSeq Acc Id: ENSP00000462914   ⟸   ENST00000579590
RefSeq Acc Id: ENSP00000501836   ⟸   ENST00000674522
RefSeq Acc Id: ENSP00000501981   ⟸   ENST00000674961
RefSeq Acc Id: ENSP00000502137   ⟸   ENST00000674964
RefSeq Acc Id: ENSP00000502212   ⟸   ENST00000674898
RefSeq Acc Id: ENSP00000502773   ⟸   ENST00000674574
RefSeq Acc Id: ENSP00000502227   ⟸   ENST00000675822
RefSeq Acc Id: ENSP00000501595   ⟸   ENST00000675656
RefSeq Acc Id: ENSP00000502532   ⟸   ENST00000675379
RefSeq Acc Id: ENSP00000502546   ⟸   ENST00000675127
RefSeq Acc Id: ENSP00000502565   ⟸   ENST00000676105
RefSeq Acc Id: ENSP00000502813   ⟸   ENST00000676073
RefSeq Acc Id: XP_047291269   ⟸   XM_047435313
- Peptide Label: isoform X5
RefSeq Acc Id: XP_047291270   ⟸   XM_047435314
- Peptide Label: isoform X5
RefSeq Acc Id: XP_047291267   ⟸   XM_047435311
- Peptide Label: isoform X2
- UniProtKB: A0A6Q8PF05 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047291268   ⟸   XM_047435312
- Peptide Label: isoform X3
- UniProtKB: A0A6Q8PF05 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047291271   ⟸   XM_047435315
- Peptide Label: isoform X6
RefSeq Acc Id: XP_047291272   ⟸   XM_047435316
- Peptide Label: isoform X7
RefSeq Acc Id: XP_054170960   ⟸   XM_054314985
- Peptide Label: isoform X5
RefSeq Acc Id: XP_054170961   ⟸   XM_054314986
- Peptide Label: isoform X5
RefSeq Acc Id: XP_054170956   ⟸   XM_054314981
- Peptide Label: isoform X1
- UniProtKB: A0A6Q8PF05 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054170957   ⟸   XM_054314982
- Peptide Label: isoform X2
- UniProtKB: A0A6Q8PF05 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054170958   ⟸   XM_054314983
- Peptide Label: isoform X3
- UniProtKB: A0A6Q8PF05 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054170959   ⟸   XM_054314984
- Peptide Label: isoform X4
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q96DH6-F1-model_v2 AlphaFold Q96DH6 1-328 view protein structure

Promoters
RGD ID:6794348
Promoter ID:HG_KWN:26655
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_138962,   NM_170721
Position:
Human AssemblyChrPosition (strand)Source
Build 361752,688,346 - 52,689,137 (+)MPROMDB
RGD ID:6811258
Promoter ID:HG_ACW:35425
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562
Transcripts:MSI2.JAPR07,   MSI2.QAPR07-UNSPLICED,   MSI2.VBAPR07
Position:
Human AssemblyChrPosition (strand)Source
Build 361752,887,446 - 52,888,047 (+)MPROMDB
RGD ID:7235761
Promoter ID:EPDNEW_H23626
Type:initiation region
Name:MSI2_4
Description:musashi RNA binding protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H23628  EPDNEW_H23627  EPDNEW_H23629  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381757,255,859 - 57,255,919EPDNEW
RGD ID:7235765
Promoter ID:EPDNEW_H23627
Type:initiation region
Name:MSI2_1
Description:musashi RNA binding protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H23626  EPDNEW_H23628  EPDNEW_H23629  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381757,256,551 - 57,256,611EPDNEW
RGD ID:7235763
Promoter ID:EPDNEW_H23628
Type:initiation region
Name:MSI2_2
Description:musashi RNA binding protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H23626  EPDNEW_H23627  EPDNEW_H23629  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381757,256,733 - 57,256,793EPDNEW
RGD ID:7235771
Promoter ID:EPDNEW_H23629
Type:initiation region
Name:MSI2_3
Description:musashi RNA binding protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H23626  EPDNEW_H23628  EPDNEW_H23627  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381757,294,691 - 57,294,751EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:18585 AgrOrtholog
COSMIC MSI2 COSMIC
Ensembl Genes ENSG00000153944 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000284073 ENTREZGENE
  ENST00000284073.7 UniProtKB/Swiss-Prot
  ENST00000322684 ENTREZGENE
  ENST00000322684.7 UniProtKB/Swiss-Prot
  ENST00000416426 ENTREZGENE
  ENST00000416426.6 UniProtKB/TrEMBL
  ENST00000442934.6 UniProtKB/TrEMBL
  ENST00000579180.2 UniProtKB/Swiss-Prot
  ENST00000579590.5 UniProtKB/TrEMBL
  ENST00000581776.5 UniProtKB/TrEMBL
  ENST00000674522.1 UniProtKB/TrEMBL
  ENST00000674574.1 UniProtKB/TrEMBL
  ENST00000674898.1 UniProtKB/TrEMBL
  ENST00000674961.1 UniProtKB/TrEMBL
  ENST00000674964.1 UniProtKB/Swiss-Prot
  ENST00000675127.1 UniProtKB/TrEMBL
  ENST00000675379.1 UniProtKB/TrEMBL
  ENST00000675656.1 UniProtKB/TrEMBL
  ENST00000675822.1 UniProtKB/TrEMBL
  ENST00000676073.1 UniProtKB/TrEMBL
  ENST00000676105.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000153944 GTEx
HGNC ID HGNC:18585 ENTREZGENE
Human Proteome Map MSI2 Human Proteome Map
InterPro MSI_RRM2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:124540 UniProtKB/Swiss-Prot
NCBI Gene 124540 ENTREZGENE
OMIM 607897 OMIM
PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA38590 PharmGKB
PROSITE RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A6Q8PF05 ENTREZGENE, UniProtKB/TrEMBL
  A0A6Q8PFI2_HUMAN UniProtKB/TrEMBL
  A0A6Q8PFU8_HUMAN UniProtKB/TrEMBL
  A0A6Q8PGD8_HUMAN UniProtKB/TrEMBL
  A0A6Q8PGF5_HUMAN UniProtKB/TrEMBL
  A0A6Q8PH26_HUMAN UniProtKB/TrEMBL
  A0A6Q8PH41_HUMAN UniProtKB/TrEMBL
  A0A6Q8PH51_HUMAN UniProtKB/TrEMBL
  A0A6Q8PHP1_HUMAN UniProtKB/TrEMBL
  A0A6Q8PHT3_HUMAN UniProtKB/TrEMBL
  B4DHE8 ENTREZGENE, UniProtKB/TrEMBL
  B4DM51_HUMAN UniProtKB/TrEMBL
  J3KTC1_HUMAN UniProtKB/TrEMBL
  J3QKT5_HUMAN UniProtKB/TrEMBL
  MSI2H_HUMAN UniProtKB/Swiss-Prot
  Q7Z6M7 ENTREZGENE
  Q8N9T4 ENTREZGENE
  Q96DH6 ENTREZGENE
UniProt Secondary Q7Z6M7 UniProtKB/Swiss-Prot
  Q8N9T4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-10 MSI2  musashi RNA binding protein 2  MSI2  musashi RNA-binding protein 2  Symbol and/or name change 5135510 APPROVED
2013-01-02 MSI2  musashi RNA-binding protein 2  MSI2  musashi homolog 2 (Drosophila)  Symbol and/or name change 5135510 APPROVED