Mir194-1 (microRNA 194-1) - Rat Genome Database

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Gene: Mir194-1 (microRNA 194-1) Mus musculus
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Symbol: Mir194-1
Name: microRNA 194-1
RGD ID: 1608302
MGI Page MGI
Description: Acts upstream of or within cellular response to amino acid stimulus and cellular response to lipopolysaccharide. Part of RISC complex. Is expressed in several structures, including cranial ganglion; eye; gonad; hemolymphoid system gland; and inner ear. Orthologous to human MIR194-1 (microRNA 194-1).
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: miR-194; mir-194-1; Mirn; Mirn19; Mirn194; Mirn194-1
RGD Orthologs
Human
Rat
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391185,045,516 - 185,045,582 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1185,045,516 - 185,045,582 (+)EnsemblGRCm39 Ensembl
GRCm381185,313,319 - 185,313,385 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1185,313,319 - 185,313,385 (+)EnsemblGRCm38mm10GRCm38
MGSCv371187,137,198 - 187,137,264 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Cytogenetic Map1H5NCBI
cM Map189.49NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12554859   PMID:14573789   PMID:16369549   PMID:16381832   PMID:17369397   PMID:17597072   PMID:17604727   PMID:17726050   PMID:18452032   PMID:18762567   PMID:19559694   PMID:20215419  
PMID:20413612   PMID:20467336   PMID:20548288   PMID:20979124   PMID:21037258   PMID:21267068   PMID:21887698   PMID:23185045   PMID:24197061   PMID:24205035   PMID:25285168   PMID:25412310  
PMID:25797619   PMID:27981676   PMID:28092415   PMID:28465351   PMID:28941704   PMID:28951211   PMID:30170731   PMID:30201567   PMID:31144266   PMID:31496625   PMID:31930767   PMID:32349546  
PMID:32522221   PMID:32661617   PMID:33068587   PMID:33479193   PMID:33662431   PMID:33839577   PMID:34843716   PMID:36200131   PMID:36868469   PMID:37224018  


Genomics

Comparative Map Data
Mir194-1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391185,045,516 - 185,045,582 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1185,045,516 - 185,045,582 (+)EnsemblGRCm39 Ensembl
GRCm381185,313,319 - 185,313,385 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1185,313,319 - 185,313,385 (+)EnsemblGRCm38mm10GRCm38
MGSCv371187,137,198 - 187,137,264 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Cytogenetic Map1H5NCBI
cM Map189.49NCBI
MIR194-1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381220,118,157 - 220,118,241 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1220,118,157 - 220,118,241 (-)EnsemblGRCh38hg38GRCh38
GRCh371220,291,499 - 220,291,583 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361218,358,121 - 218,358,205 (-)NCBINCBI36Build 36hg18NCBI36
Celera1193,510,708 - 193,510,792 (-)NCBICelera
Cytogenetic Map1q41NCBI
HuRef1190,965,852 - 190,965,936 (-)NCBIHuRef
CHM1_11221,563,984 - 221,564,068 (-)NCBICHM1_1
T2T-CHM13v2.01219,357,431 - 219,357,515 (-)NCBIT2T-CHM13v2.0
Mir194-1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81399,382,716 - 99,382,798 (+)NCBIGRCr8
mRatBN7.21396,851,166 - 96,851,248 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1396,851,166 - 96,851,248 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1399,350,308 - 99,350,390 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.013100,756,265 - 100,756,347 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01397,932,562 - 97,932,644 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.013103,250,576 - 103,250,658 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13103,250,576 - 103,250,658 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013107,924,394 - 107,924,476 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1396,366,365 - 96,366,447 (+)NCBICelera
Cytogenetic Map13q26NCBI
MIR194
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13814,895,401 - 14,895,458 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3814,895,401 - 14,895,458 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3814,938,022 - 14,938,079 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03814,930,881 - 14,930,938 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3814,930,881 - 14,930,938 (-)EnsemblROS_Cfam_1.0 Ensembl
UNSW_CanFamBas_1.03815,286,924 - 15,286,981 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03815,575,390 - 15,575,447 (-)NCBIUU_Cfam_GSD_1.0
MIR194B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl109,704,910 - 9,704,987 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1109,704,910 - 9,704,987 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21011,786,871 - 11,786,948 (-)NCBISscrofa10.2Sscrofa10.2susScr3

Variants

.
Variants in Mir194-1
1 total Variants
miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:10594
Count of gene targets:5479
Count of transcripts:8529
Interacting mature miRNAs:mmu-miR-194-1-3p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1103933405191225397Mouse
4141149Hbnr4_mHeligmosomoides bakeri nematode resistance 4 (mouse)Not determined147125258188983224Mouse
1357618Splq5_mspleen weight QTL 5 (mouse)Not determined1150193673188359312Mouse
1357493Lgaq3_mlate growth adjusted QTL 3 (mouse)Not determined1150193673188359312Mouse
1357485Lgq4_mlate growth QTL 4 (mouse)Not determined1150193673188359312Mouse
1300969Sluc5_msusceptibility to lung cancer 5 (mouse)Not determined1151186243185186402Mouse
4142159Nba2_mNew Zealand Black autoimmunity 2 (mouse)Not determined151835111185835280Mouse
1357889Lprq3_mlipoprotein QTL 3 (mouse)Not determined1152038741186038913Mouse
1301301Sle1_msystemic lupus erythmatosus susceptibility 1 (mouse)Not determined1152038741186038913Mouse
1301025Lbw7_mlupus NZB x NZW 7 (mouse)Not determined1152038741186038913Mouse
1301614Cgnz1_mchronic glomerulonephritis in NZM 1 (mouse)Not determined1152038741186038913Mouse
4141554Cfmq1_mcystic fibrosis modifier QTL 1 (mouse)Not determined1152038741186038913Mouse
13464138Hdlq107_mHDL QTL 107 (mouse)1152132744186132744Mouse
11251722Ewc1_methanol withdrawal and consumption 1 (mouse)1152132744186132744Mouse
10054270Nba10_mNew Zealand Black autoimmunity 10 (mouse)Not determined1152794822186438620Mouse
10412074Nhdlt1_mnon-HDL cholesterol and triglyceride levels 1 (mouse)Not determined1153675990187676105Mouse
10054490Opefa_mopen field activity (mouse)Not determined1153712853187712853Mouse
10043963Obq25_mobesity QTL 25 (mouse)Not determined1154410512188410512Mouse
12904936Edlmmq1_mextensor digitorum longus muscle mass QTL 1 (mouse)1155002940189002940Mouse
12904944Tammq1_mtibialis anterior muscle mass QTL 1 (mouse)1155002940189002940Mouse
12904957Gmmq1_mgastrocnemius muscle mass QTL 1 (mouse)1155002940189002940Mouse
10054271Nba9_mNew Zealand Black autoimmunity 9 (mouse)Not determined1155525623189527533Mouse
4141244Bmd5c_mbone mineral density 5c (mouse)Not determined155526796189526897Mouse
4142182Shali5_msurvival time to hyperoxic acute lung injury 5 (mouse)Not determined155582237185994196Mouse
11081167Tir8_mtrypanosome infection response 8 (mouse)1155716221189716369Mouse
1301619Cafq1_mcaffeine metabolism QTL 1 (mouse)Not determined1155716221189716369Mouse
1301932Ssta2_msusceptibility to Salmonella typhimurium antigens 2 (mouse)Not determined1155716221189716369Mouse
1301866Cplaq3_mcircadian period of locomotor activity 3 (mouse)Not determined1155721528189722608Mouse
1302132Pbw1_mpentobarbital withdrawal QTL 1 (mouse)Not determined1155831765189831892Mouse
4141165Bglu3_mblood glucose level 3 (mouse)Not determined155831765189831892Mouse
10766456Sle21_msystematic lupus erythematosus susceptibility 21 (mouse)1155831765189831892Mouse
1301122Cd8mts1_mCD8 T memory cell subset 1 (mouse)Not determined1155831765189831892Mouse
1301189Lmr8_mleishmaniasis resistance 8 (mouse)Not determined1156602037189303617Mouse
1301134Bmd1_mbone mineral density 1 (mouse)Not determined1156602037189303617Mouse
1301602Bslm4_mbasal locomotor activity 4 (mouse)Not determined1157456299191456436Mouse
1300732Melm2_mmelanoma modifier 2 (mouse)Not determined1157456299191456436Mouse
1301216Cbm1_mcerebellum weight 1 (mouse)Not determined1157456299191456436Mouse
1300948Fglu2_mfasting glucose 2 (mouse)Not determined1157456299191456436Mouse
1301565Mnotch_mmodifier of Notch (mouse)Not determined1157456299191456436Mouse
4141245Cq2_mcholesterol QTL 2 (mouse)Not determined1157456299191456436Mouse
1300745Gvhd1_mgraft-versus-host disease 1 (mouse)Not determined1157456299191456436Mouse
1301202Yaa4_mY-linked autoimmune acceleration 4 (mouse)Not determined1158468817192468938Mouse
1300842Sle9_msystematic lupus erythematosus susceptibility 9 (mouse)Not determined1158468817192468938Mouse
11059558Lmr20c_mleishmaniasis resistance 20c (mouse)1158468817192468938Mouse
11059557Lmr20a_mleishmaniasis resistance 20a (mouse)1158468817192468938Mouse
11059556Lmr20b_mleishmaniasis resistance 20b (mouse)1158468817192468938Mouse
10402498Lmr20_mleishmaniasis resistance 20 (mouse)Not determined1158468817192468938Mouse
1301431Pcho1_mplasma cholesterol 1 (mouse)Not determined1159262573193262693Mouse
12790987Tgl5_mtriglyceride 5 (mouse)1160097157194097157Mouse
12790988Phdlc5_mplasma HDL cholesterol 5 (mouse)9160097157194097157Mouse
1300823Ath9_matherosclerosis 9 (mouse)Not determined1160112768194112883Mouse
1301632Bw8q1_mbody weight at 8 weeks QTL 1 (mouse)Not determined1161201261195154279Mouse
1301596Elnt_mescape latencies during navigation task (mouse)Not determined1162145207194111528Mouse
1301309Emo1_memotionality 1 (mouse)Not determined1162977097185994196Mouse
1300888Berr1_mberghei resistance locus 1 (mouse)Not determined1164143227190534272Mouse
1301339Hdlq15_mHDL QTL 15 (mouse)Not determined1165873675195154279Mouse
1302158Fembrs5_mfemur breaking strength 5 (mouse)Not determined1167462514195154279Mouse
1559024Zit1_mzinc induced tolerance 1 (mouse)Not determined1167462514195154279Mouse
4141483Femwf7_mfemur work to failure 7 (mouse)Not determined167462514195154279Mouse
12792983Liq1_mlimb inflammation QTL 1 (mouse)1167586086191225397Mouse
1301333Mop3_mmorphine preference 3 (mouse)Not determined1167756737189303617Mouse
1558802Skmw6_mskeletal muscle weight 6 (mouse)Not determined1167954584195154279Mouse
1301251Scc3_mcolon tumor susceptibility 3 (mouse)Not determined1168213823195154279Mouse
1301132Mors1_mmodifier of obesity related sterility 1 (mouse)Not determined1170379500195154279Mouse
4142389Scfr1_mstem cell frequency regulator 1 (mouse)Not determined171632048189303617Mouse
1300727Mptp1_mMPTP sensitivity 1 (mouse)Not determined1171632048192681050Mouse
1357732Tbbmd1_mtotal body bone mineral density 1 (mouse)Not determined1171983110195154279Mouse
11049575Lmr8b_mleishmaniasis resistance 8b (mouse)1172303451195154279Mouse
1301652Cpfd2_mcerebellum pattern fissures (mouse)Not determined1172303451195154279Mouse
10043863Swrl5_mSWR lupus locus 5 (mouse)Not determined1172303451195154279Mouse
12880426V25Dq2_mvitamin D inactive form serum level QTL 2 (mouse)1172532197195154279Mouse
12880429V25Dq1_mvitamin D inactive form serum level QTL 1 (mouse)1172632197195154279Mouse
1302023Orch4_mautoimmune orchitis resistance 4 (mouse)Not determined1175211318195154279Mouse
11532690Sluc37_msusceptibility to lung cancer 37 (mouse)1175468817194111528Mouse
1357692Axtq1_manxiety QTL 1 (mouse)Not determined1180832317191851043Mouse
1357620Aaj1_manxiety in A/J 1 (mouse)Not determined1180832317191851043Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000083647
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1185,045,516 - 185,045,582 (+)Ensembl
GRCm38.p6 Ensembl1185,313,319 - 185,313,385 (+)Ensembl
RefSeq Acc Id: NR_029580
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391185,045,516 - 185,045,582 (+)NCBI
GRCm381185,313,319 - 185,313,385 (+)ENTREZGENE
MGSCv371187,137,198 - 187,137,264 (+)RGD
cM Map1 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2676858 AgrOrtholog
Ensembl Genes ENSMUSG00000065581 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083647 ENTREZGENE
MGD MGI:2676858 ENTREZGENE
miRBase MI0000236 ENTREZGENE
NCBI Gene 387189 ENTREZGENE
PhenoGen Mir194-1 PhenoGen
RNAcentral URS000029C2DC RNACentral
  URS00005B625D RNACentral
  URS000075EC31 RNACentral