CD300LB (CD300 molecule like family member b) - Rat Genome Database

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Gene: CD300LB (CD300 molecule like family member b) Homo sapiens
Analyze
Symbol: CD300LB
Name: CD300 molecule like family member b
RGD ID: 1604243
HGNC Page HGNC:30811
Description: Enables identical protein binding activity. Predicted to be involved in immune system process. Predicted to act upstream of or within cellular response to lipopolysaccharide; neutrophil mediated immunity; and positive regulation of mast cell activation. Predicted to be active in plasma membrane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CD300 antigen like family member B; CD300 antigen-like family member B; CD300 molecule-like family member b; CD300b; CLM-7; CLM7; CMRF35-A2; CMRF35-like molecule 7; immune receptor expressed on myeloid cells 3; IREM-3; IREM3; leukocyte mono-Ig-like receptor 5; TREM-5; TREM5; triggering receptor expressed on myeloid cells 5
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381774,521,174 - 74,531,475 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1774,519,000 - 74,531,475 (-)EnsemblGRCh38hg38GRCh38
GRCh371772,517,313 - 72,527,614 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361770,028,908 - 70,039,208 (-)NCBINCBI36Build 36hg18NCBI36
Celera1769,109,803 - 69,120,103 (-)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1767,926,626 - 67,936,923 (-)NCBIHuRef
CHM1_11772,581,884 - 72,592,188 (-)NCBICHM1_1
T2T-CHM13v2.01775,411,699 - 75,421,996 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)
plasma membrane  (IBA,IEA,TAS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:12975309   PMID:16344560   PMID:16920917   PMID:17928527   PMID:19359216   PMID:19592130   PMID:20237496   PMID:20379614   PMID:20959446   PMID:21832049   PMID:21873635  
PMID:22291008   PMID:23072861   PMID:27261276   PMID:28005267   PMID:28065597   PMID:29051512   PMID:33961781  


Genomics

Comparative Map Data
CD300LB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381774,521,174 - 74,531,475 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1774,519,000 - 74,531,475 (-)EnsemblGRCh38hg38GRCh38
GRCh371772,517,313 - 72,527,614 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361770,028,908 - 70,039,208 (-)NCBINCBI36Build 36hg18NCBI36
Celera1769,109,803 - 69,120,103 (-)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1767,926,626 - 67,936,923 (-)NCBIHuRef
CHM1_11772,581,884 - 72,592,188 (-)NCBICHM1_1
T2T-CHM13v2.01775,411,699 - 75,421,996 (-)NCBIT2T-CHM13v2.0
Cd300lb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911114,813,605 - 114,825,197 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11114,813,607 - 114,825,212 (-)EnsemblGRCm39 Ensembl
GRCm3811114,922,779 - 114,934,371 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11114,922,781 - 114,934,386 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711114,784,095 - 114,795,700 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611114,738,871 - 114,750,476 (-)NCBIMGSCv36mm8
Celera11126,678,894 - 126,690,427 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1180.55NCBI
Cd300lb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810100,463,815 - 100,473,804 (-)NCBIGRCr8
mRatBN7.21099,964,801 - 99,974,790 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1099,964,801 - 99,974,790 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10105,022,882 - 105,033,293 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010104,486,002 - 104,496,413 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01099,885,825 - 99,895,813 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010103,471,082 - 103,481,071 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10103,467,725 - 103,481,153 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010103,127,534 - 103,137,523 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410104,825,709 - 104,835,698 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1098,550,146 - 98,560,135 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
Cd300lb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555531,383,433 - 1,392,598 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555531,382,594 - 1,392,592 (-)NCBIChiLan1.0ChiLan1.0
CD300LB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21990,556,703 - 90,569,107 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11795,379,700 - 95,392,093 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01768,466,870 - 68,477,698 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11774,024,132 - 74,034,412 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1774,024,132 - 74,034,412 (-)Ensemblpanpan1.1panPan2
LOC100686711
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.195,916,954 - 5,926,811 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha96,538,822 - 6,548,694 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.096,588,999 - 6,598,880 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.196,629,704 - 6,639,547 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.096,733,239 - 6,743,114 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.096,793,094 - 6,802,969 (+)NCBIUU_Cfam_GSD_1.0
CD300LB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl126,637,483 - 6,646,394 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1126,637,290 - 6,646,459 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2126,626,308 - 6,635,824 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Cd300lb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248014,440,201 - 4,449,190 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248014,438,363 - 4,449,155 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CD300LB
16 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 17q25.1(chr17:73851698-74610813)x3 copy number gain See cases [RCV000050454] Chr17:73851698..74610813 [GRCh38]
Chr17:71847837..72606952 [GRCh37]
Chr17:69359432..70118547 [NCBI36]
Chr17:17q25.1		 benign|conflicting interpretations of pathogenicity|conflicting data from submitters
GRCh38/hg38 17q24.3-25.3(chr17:69209079-83086677)x3 copy number gain See cases [RCV000052486] Chr17:69209079..83086677 [GRCh38]
Chr17:67205220..81044553 [GRCh37]
Chr17:64716815..78637842 [NCBI36]
Chr17:17q24.3-25.3		 pathogenic
GRCh38/hg38 17q23.2-25.3(chr17:36449220-83086677)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052483]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052483]|See cases [RCV000052483] Chr17:36449220..83086677 [GRCh38]
Chr17:58617905..81044553 [GRCh37]
Chr17:55972687..78637842 [NCBI36]
Chr17:17q23.2-25.3		 pathogenic
GRCh38/hg38 17q25.1(chr17:73843095-74670538)x3 copy number gain See cases [RCV000053594] Chr17:73843095..74670538 [GRCh38]
Chr17:71839234..72666677 [GRCh37]
Chr17:69350829..70178272 [NCBI36]
Chr17:17q25.1		 benign
GRCh38/hg38 17q25.1(chr17:73851698-74732123)x3 copy number gain See cases [RCV000053597] Chr17:73851698..74732123 [GRCh38]
Chr17:71847837..72728262 [GRCh37]
Chr17:69359432..70239857 [NCBI36]
Chr17:17q25.1		 benign
GRCh38/hg38 17q25.1(chr17:73851718-74610906)x3 copy number gain See cases [RCV000134803] Chr17:73851718..74610906 [GRCh38]
Chr17:71847857..72607045 [GRCh37]
Chr17:69359452..70118640 [NCBI36]
Chr17:17q25.1		 benign
GRCh38/hg38 17q23.1-25.1(chr17:36449220-75053130)x3 copy number gain See cases [RCV000137437] Chr17:36449220..75053130 [GRCh38]
Chr17:57595736..73049225 [GRCh37]
Chr17:54950518..70560820 [NCBI36]
Chr17:17q23.1-25.1		 pathogenic
GRCh38/hg38 17q25.1(chr17:73967269-74610906)x3 copy number gain See cases [RCV000139306] Chr17:73967269..74610906 [GRCh38]
Chr17:71963408..72607045 [GRCh37]
Chr17:69475003..70118640 [NCBI36]
Chr17:17q25.1		 likely benign
GRCh38/hg38 17q25.1(chr17:73851698-74651858)x3 copy number gain See cases [RCV000141106] Chr17:73851698..74651858 [GRCh38]
Chr17:71847837..72647997 [GRCh37]
Chr17:69359432..70159592 [NCBI36]
Chr17:17q25.1		 benign|likely benign|conflicting data from submitters
GRCh38/hg38 17q24.3-25.3(chr17:69916435-83102552)x3 copy number gain See cases [RCV000143342] Chr17:69916435..83102552 [GRCh38]
Chr17:67912576..81048189 [GRCh37]
Chr17:65424171..78653717 [NCBI36]
Chr17:17q24.3-25.3		 pathogenic
GRCh38/hg38 17q25.1(chr17:73851698-74610813)x3 copy number gain See cases [RCV000148091] Chr17:73851698..74610813 [GRCh38]
Chr17:71847837..72606952 [GRCh37]
Chr17:69359432..70118547 [NCBI36]
Chr17:17q25.1		 benign
GRCh37/hg19 17q24.2-25.3(chr17:64241326-81041938)x3 copy number gain See cases [RCV000447577] Chr17:64241326..81041938 [GRCh37]
Chr17:17q24.2-25.3		 pathogenic
GRCh37/hg19 17q25.1(chr17:71940807-72667784)x3 copy number gain See cases [RCV000445893] Chr17:71940807..72667784 [GRCh37]
Chr17:17q25.1		 likely benign
GRCh37/hg19 17q21.31-25.3(chr17:42580684-81085615)x3 copy number gain See cases [RCV000447823] Chr17:42580684..81085615 [GRCh37]
Chr17:17q21.31-25.3		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:526-81041938) copy number gain See cases [RCV000511439] Chr17:526..81041938 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
NM_174892.4(CD300LB):c.430G>A (p.Gly144Ser) single nucleotide variant not specified [RCV004289441] Chr17:74523592 [GRCh38]
Chr17:72519731 [GRCh37]
Chr17:17q25.1		 likely benign
GRCh37/hg19 17p13.3-q25.3(chr17:526-81041938)x3 copy number gain See cases [RCV000512441] Chr17:526..81041938 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17q24.2-25.3(chr17:67002415-81041938)x3 copy number gain See cases [RCV000512573] Chr17:67002415..81041938 [GRCh37]
Chr17:17q24.2-25.3		 pathogenic
GRCh37/hg19 17q25.1(chr17:71810700-72702515)x3 copy number gain not provided [RCV000683959] Chr17:71810700..72702515 [GRCh37]
Chr17:17q25.1		 likely benign
GRCh37/hg19 17q24.1-25.3(chr17:63689671-81041938)x3 copy number gain not provided [RCV000683952] Chr17:63689671..81041938 [GRCh37]
Chr17:17q24.1-25.3		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:8547-81060040)x3 copy number gain not provided [RCV000739324] Chr17:8547..81060040 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:7214-81058310)x3 copy number gain not provided [RCV000739320] Chr17:7214..81058310 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:12344-81057996)x3 copy number gain not provided [RCV000739325] Chr17:12344..81057996 [GRCh37]
Chr17:17p13.3-q25.3		 pathogenic
GRCh37/hg19 17q25.1(chr17:71822155-72690918)x3 copy number gain not provided [RCV000739661] Chr17:71822155..72690918 [GRCh37]
Chr17:17q25.1		 likely benign
GRCh37/hg19 17q25.1(chr17:71834001-72690918)x3 copy number gain not provided [RCV000739662] Chr17:71834001..72690918 [GRCh37]
Chr17:17q25.1		 uncertain significance
GRCh37/hg19 17q25.1(chr17:71850605-72691928)x3 copy number gain not provided [RCV000739663] Chr17:71850605..72691928 [GRCh37]
Chr17:17q25.1		 benign
GRCh37/hg19 17q24.1-25.2(chr17:64159738-74891024)x3 copy number gain not provided [RCV000762750] Chr17:64159738..74891024 [GRCh37]
Chr17:17q24.1-25.2		 likely pathogenic
GRCh37/hg19 17q24.3-25.1(chr17:70720436-73175266) copy number gain not provided [RCV000767767] Chr17:70720436..73175266 [GRCh37]
Chr17:17q24.3-25.1		 pathogenic
GRCh37/hg19 17q24.1-25.3(chr17:62778720-81041938)x3 copy number gain not provided [RCV000849900] Chr17:62778720..81041938 [GRCh37]
Chr17:17q24.1-25.3		 pathogenic
GRCh37/hg19 17q25.1(chr17:71811005-72681118)x3 copy number gain not provided [RCV001006916] Chr17:71811005..72681118 [GRCh37]
Chr17:17q25.1		 likely benign
GRCh37/hg19 17q25.1(chr17:71813960-72707349)x3 copy number gain not provided [RCV001829043] Chr17:71813960..72707349 [GRCh37]
Chr17:17q25.1		 likely benign
NM_174892.4(CD300LB):c.88G>T (p.Gly30Trp) single nucleotide variant not specified [RCV004178458] Chr17:74526030 [GRCh38]
Chr17:72522169 [GRCh37]
Chr17:17q25.1		 uncertain significance
NM_174892.4(CD300LB):c.-27C>T single nucleotide variant not specified [RCV004205288] Chr17:74531377 [GRCh38]
Chr17:72527516 [GRCh37]
Chr17:17q25.1		 likely benign
NM_174892.4(CD300LB):c.-59G>T single nucleotide variant not specified [RCV004153594] Chr17:74531409 [GRCh38]
Chr17:72527548 [GRCh37]
Chr17:17q25.1		 uncertain significance
NM_174892.4(CD300LB):c.74G>C (p.Arg25Thr) single nucleotide variant not specified [RCV004124177] Chr17:74526044 [GRCh38]
Chr17:72522183 [GRCh37]
Chr17:17q25.1		 uncertain significance
NM_174892.4(CD300LB):c.410G>A (p.Ser137Asn) single nucleotide variant not specified [RCV004096944] Chr17:74523612 [GRCh38]
Chr17:72519751 [GRCh37]
Chr17:17q25.1		 uncertain significance
NM_174892.4(CD300LB):c.160C>T (p.Arg54Cys) single nucleotide variant not specified [RCV004238882] Chr17:74525958 [GRCh38]
Chr17:72522097 [GRCh37]
Chr17:17q25.1		 uncertain significance
NM_174892.4(CD300LB):c.-14G>T single nucleotide variant not specified [RCV004136408] Chr17:74531364 [GRCh38]
Chr17:72527503 [GRCh37]
Chr17:17q25.1		 uncertain significance
NM_174892.4(CD300LB):c.161G>A (p.Arg54His) single nucleotide variant not specified [RCV004345886] Chr17:74525957 [GRCh38]
Chr17:72522096 [GRCh37]
Chr17:17q25.1		 uncertain significance
NM_174892.4(CD300LB):c.510C>A (p.Leu170=) single nucleotide variant not provided [RCV003421469] Chr17:74522834 [GRCh38]
Chr17:72518973 [GRCh37]
Chr17:17q25.1		 likely benign
NM_174892.4(CD300LB):c.77C>T (p.Ala26Val) single nucleotide variant not specified [RCV004435394] Chr17:74526041 [GRCh38]
Chr17:72522180 [GRCh37]
Chr17:17q25.1		 uncertain significance
NM_174892.4(CD300LB):c.76G>T (p.Ala26Ser) single nucleotide variant not specified [RCV004435393] Chr17:74526042 [GRCh38]
Chr17:72522181 [GRCh37]
Chr17:17q25.1		 uncertain significance
NM_174892.4(CD300LB):c.436C>T (p.His146Tyr) single nucleotide variant not specified [RCV004435396] Chr17:74523586 [GRCh38]
Chr17:72519725 [GRCh37]
Chr17:17q25.1		 likely benign
NM_174892.4(CD300LB):c.539A>T (p.Glu180Val) single nucleotide variant not specified [RCV004435397] Chr17:74522805 [GRCh38]
Chr17:72518944 [GRCh37]
Chr17:17q25.1		 uncertain significance
NM_174892.4(CD300LB):c.406A>G (p.Asn136Asp) single nucleotide variant not specified [RCV004435395] Chr17:74523616 [GRCh38]
Chr17:72519755 [GRCh37]
Chr17:17q25.1		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1106
Count of miRNA genes:678
Interacting mature miRNAs:765
Transcripts:ENST00000314401, ENST00000392621
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406982397GWAS631373_Hblood protein measurement QTL GWAS631373 (human)5e-31blood protein measurementblood protein measurement (CMO:0000028)177452445974524460Human

Markers in Region
SHGC-149307  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371772,516,984 - 72,517,288UniSTSGRCh37
Build 361770,028,579 - 70,028,883RGDNCBI36
Celera1769,109,474 - 69,109,778RGD
Cytogenetic Map17q25.1UniSTS
HuRef1767,926,297 - 67,926,601UniSTS
TNG Radiation Hybrid Map1733235.0UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
1203 2303 2622 2193 4025 1663 2114 2 592 1809 432 1937 6811 6258 10 3106 776 1596 1419 162

Sequence


Ensembl Acc Id: ENST00000314401   ⟹   ENSP00000317337
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1774,523,153 - 74,531,474 (-)Ensembl
Ensembl Acc Id: ENST00000392621   ⟹   ENSP00000376397
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1774,521,174 - 74,531,475 (-)Ensembl
Ensembl Acc Id: ENST00000718280   ⟹   ENSP00000520719
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1774,519,000 - 74,531,475 (-)Ensembl
RefSeq Acc Id: NM_174892   ⟹   NP_777552
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381774,521,174 - 74,531,475 (-)NCBI
GRCh371772,516,894 - 72,527,613 (-)NCBI
Build 361770,028,908 - 70,039,208 (-)NCBI Archive
Celera1769,109,803 - 69,120,103 (-)RGD
HuRef1767,926,626 - 67,936,923 (-)ENTREZGENE
CHM1_11772,581,884 - 72,592,188 (-)NCBI
T2T-CHM13v2.01775,411,699 - 75,421,996 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005257027   ⟹   XP_005257084
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381774,521,174 - 74,531,475 (-)NCBI
GRCh371772,516,894 - 72,527,613 (-)NCBI
Sequence:
RefSeq Acc Id: XM_054314994   ⟹   XP_054170969
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01775,411,699 - 75,421,996 (-)NCBI
RefSeq Acc Id: NP_777552   ⟸   NM_174892
- Peptide Label: precursor
- UniProtKB: Q8IX40 (UniProtKB/Swiss-Prot),   Q1EG73 (UniProtKB/Swiss-Prot),   Q8N6D1 (UniProtKB/Swiss-Prot),   A8K4G0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_005257084   ⟸   XM_005257027
- Peptide Label: isoform X1
- UniProtKB: B4DQ71 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000376397   ⟸   ENST00000392621
Ensembl Acc Id: ENSP00000317337   ⟸   ENST00000314401
RefSeq Acc Id: XP_054170969   ⟸   XM_054314994
- Peptide Label: isoform X1
Ensembl Acc Id: ENSP00000520719   ⟸   ENST00000718280
Protein Domains
Ig-like   Ig-like V-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A8K4G0-F1-model_v2 AlphaFold A8K4G0 1-201 view protein structure

Promoters
RGD ID:6793857
Promoter ID:HG_KWN:27044
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:NM_174892
Position:
Human AssemblyChrPosition (strand)Source
Build 361770,039,176 - 70,040,147 (-)MPROMDB
RGD ID:7236213
Promoter ID:EPDNEW_H23852
Type:initiation region
Name:CD300LB_1
Description:CD300 molecule like family member b
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381774,531,474 - 74,531,534EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:30811 AgrOrtholog
COSMIC CD300LB COSMIC
Ensembl Genes ENSG00000178789 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSG00000291919 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000314401.3 UniProtKB/TrEMBL
  ENST00000392621 ENTREZGENE
  ENST00000392621.6 UniProtKB/Swiss-Prot
  ENST00000709208.1 UniProtKB/Swiss-Prot
  ENST00000709209.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000178789 GTEx
  ENSG00000291919 GTEx
HGNC ID HGNC:30811 ENTREZGENE
Human Proteome Map CD300LB Human Proteome Map
InterPro CD300_family_receptors UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_V-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:124599 UniProtKB/Swiss-Prot
NCBI Gene 124599 ENTREZGENE
OMIM 610705 OMIM
PANTHER CMRF35-LIKE MOLECULE 7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  POLYMERIC-IMMUNOGLOBULIN RECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam V-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA142672151 PharmGKB
PROSITE IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00409 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A8K4G0 ENTREZGENE
  B4DQ71 ENTREZGENE, UniProtKB/TrEMBL
  CLM7_HUMAN UniProtKB/Swiss-Prot
  J9JID3_HUMAN UniProtKB/TrEMBL
  Q1EG73 ENTREZGENE
  Q8IX40 ENTREZGENE
  Q8N6D1 ENTREZGENE
UniProt Secondary Q1EG73 UniProtKB/Swiss-Prot
  Q8IX40 UniProtKB/Swiss-Prot
  Q8N6D1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-05 CD300LB  CD300 molecule like family member b  CD300LB  CD300 molecule-like family member b  Symbol and/or name change 5135510 APPROVED