TSR2 (TSR2 ribosome maturation factor) - Rat Genome Database

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Gene: TSR2 (TSR2 ribosome maturation factor) Homo sapiens
Analyze
Symbol: TSR2
Name: TSR2 ribosome maturation factor
RGD ID: 1602842
HGNC Page HGNC:25455
Description: Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be active in nucleus. Implicated in Diamond-Blackfan anemia 14 with mandibulofacial dysostosis.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: DBA14; DT1P1A10; escortin; MGC20451; pre-rRNA-processing protein TSR2 homolog; RP1-112K5.2; TSR2, 20S rRNA accumulation, homolog; TSR2, 20S rRNA accumulation, homolog (S. cerevisiae); TSR2, ribosome maturation factor; WGG motif containing 1; WGG1
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X54,440,404 - 54,448,032 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX54,440,404 - 54,448,032 (+)EnsemblGRCh38hg38GRCh38
GRCh37X54,466,837 - 54,474,465 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X54,483,578 - 54,488,455 (+)NCBINCBI36Build 36hg18NCBI36
CeleraX58,299,414 - 58,304,291 (+)NCBICelera
Cytogenetic MapXp11.22NCBI
HuRefX51,518,075 - 51,522,307 (+)NCBIHuRef
CHM1_1X54,457,507 - 54,462,384 (+)NCBICHM1_1
T2T-CHM13v2.0X53,731,260 - 53,738,888 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 20 of 21 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
TSR2HumanAarskog syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Aarskog syndromeClinVar 
TSR2HumanAarskog syndrome  IAGP (Homo sapiens) more ...8554872ClinVar more ...ClinVarPMID:25741868
TSR2HumanAarskog syndrome  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: Aarskog syndromeClinVarPMID:25741868 and PMID:28492532
TSR2HumanAtkin Syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Atkin Flaitz Patil Smith syndromeClinVarPMID:26059843 and PMID:28492532
TSR2Humanautistic disorder  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: AutismClinVarPMID:21681106 and PMID:30208311
TSR2HumanCornelia de Lange syndrome 2  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Congenital muscular hypertrophy-cerebral syndromeClinVarPMID:26386245 more ...
TSR2HumanDiamond-Blackfan anemia 14 with mandibulofacial dysostosis  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Diamond-Blackfan anemia 14 with mandibulofacial dysostosisClinVarPMID:11424144 and PMID:24942156
TSR2HumanDiamond-Blackfan anemia 14 with mandibulofacial dysostosis  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: TSR2-related conditionClinVarPMID:24033266 and PMID:28492532
TSR2HumanDiamond-Blackfan anemia 14 with mandibulofacial dysostosis  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: TSR2-related conditionClinVarPMID:28492532
TSR2HumanDiamond-Blackfan anemia 14 with mandibulofacial dysostosis  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: TSR2-related conditionClinVarPMID:25741868 and PMID:28492532
TSR2HumanDiamond-Blackfan anemia 15 with mandibulofacial dysostosis  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Diamond-Blackfan anemia 15 with mandibulofacial dysostosisClinVarPMID:11424144 and PMID:24942156
TSR2Humangenetic disease  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:24033266 and PMID:28492532
TSR2Humangenetic disease  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVar 
TSR2Humangenetic disease  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 more ...
TSR2Humangenetic disease  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:26467025 and PMID:28492532
TSR2Humangenetic disease  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:28492532
TSR2Humannon-syndromic X-linked intellectual disability 1  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: INTELLECTUAL DEVELOPMENTAL DISORDER and X-LINKED 1ClinVarPMID:26059843 and PMID:28492532
TSR2Humansyndromic X-linked intellectual disability Lubs type  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Syndromic X-linked intellectual disability Lubs typeClinVarPMID:25741868
TSR2HumanX-linked Aarskog syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: FGD1-Related DisordersClinVarPMID:25741868
TSR2HumanX-linked Aarskog syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: FGD1-Related DisordersClinVar 
1 to 20 of 21 rows
Object Symbol
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Reference
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Original Reference(s)
TSR2HumanDiamond-Blackfan anemia 14 with mandibulofacial dysostosis  IAGP 7240710 OMIM 

1 to 20 of 48 rows

  
Object Symbol
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Reference
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Original Reference(s)
TSR2Human(-)-epigallocatechin 3-gallate multiple interactionsEXP 6480464[potassium chromate(VI) co-treated with epigallocatechin gallate] results in increased expression of TSR2 mRNACTDPMID:22079256
TSR2Human(1->4)-beta-D-glucan multiple interactionsISOTsr2 (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of TSR2 mRNACTDPMID:36331819
TSR2Human1,2-dimethylhydrazine decreases expressionISOTsr2 (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of TSR2 mRNACTDPMID:22206623
TSR2Human2,3,7,8-tetrachlorodibenzodioxine affects expressionISOTsr2 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of TSR2 mRNACTDPMID:21570461
TSR2Human2-hydroxypropanoic acid decreases expressionEXP 6480464Lactic Acid results in decreased expression of TSR2 mRNACTDPMID:30851411
TSR2Human4-hydroxyphenyl retinamide decreases expressionISOTsr2 (Mus musculus)6480464Fenretinide results in decreased expression of TSR2 mRNACTDPMID:28973697
TSR2Humanamphetamine decreases expressionISOTsr2 (Rattus norvegicus)6480464Amphetamine results in decreased expression of TSR2 mRNACTDPMID:30779732
TSR2Humanantirheumatic drug increases expressionEXP 6480464Antirheumatic Agents results in increased expression of TSR2 mRNACTDPMID:24449571
TSR2Humanarsane multiple interactionsEXP 6480464[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in increased expression of TSR2 mRNA and [sodium arsenite results in increased abundance of Arsenic] which results in increased expression of TSR2 mRNACTDPMID:39836092
TSR2Humanarsenic atom multiple interactionsEXP 6480464[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in increased expression of TSR2 mRNA and [sodium arsenite results in increased abundance of Arsenic] which results in increased expression of TSR2 mRNACTDPMID:39836092
TSR2Humanarsenite(3-) multiple interactionsEXP 6480464arsenite promotes the reaction [G3BP1 protein binds to TSR2 mRNA]CTDPMID:32406909
TSR2Humanbenzo[a]pyrene increases expressionISOTsr2 (Mus musculus)6480464Benzo(a)pyrene results in increased expression of TSR2 mRNACTDPMID:22228805
TSR2Humanbenzo[a]pyrene increases methylationEXP 6480464Benzo(a)pyrene results in increased methylation of TSR2 exonCTDPMID:27901495
TSR2Humanbenzo[a]pyrene affects methylationEXP 6480464Benzo(a)pyrene affects the methylation of TSR2 promoterCTDPMID:27901495
TSR2Humanbis(2-ethylhexyl) phthalate decreases expressionISOTsr2 (Mus musculus)6480464Diethylhexyl Phthalate results in decreased expression of TSR2 mRNACTDPMID:34319233
TSR2Humanbisphenol A increases expressionISOTsr2 (Rattus norvegicus)6480464bisphenol A results in increased expression of TSR2 mRNACTDPMID:25181051 and PMID:34947998
TSR2Humancadmium atom multiple interactionsEXP 6480464[Cadmium Chloride results in increased abundance of Cadmium] which results in increased expression of TSR2 mRNACTDPMID:35301059
TSR2Humancadmium dichloride multiple interactionsEXP 6480464[Cadmium Chloride results in increased abundance of Cadmium] which results in increased expression of TSR2 mRNACTDPMID:35301059
TSR2Humancarbon nanotube decreases expressionISOTsr2 (Mus musculus)6480464Nanotubes more ...CTDPMID:25554681
TSR2Humancobalt dichloride increases expressionISOTsr2 (Rattus norvegicus)6480464cobaltous chloride results in increased expression of TSR2 mRNACTDPMID:24386269

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Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
TSR2Humanmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) involved_inIBAPANTHER:PTN000478716 and SGD:S000004427150520179 GO_CentralGO_REF:0000033
TSR2HumanrRNA processing involved_inIEAUniProtKB-KW:KW-0698150520179 UniProtGO_REF:0000043

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
TSR2Humannucleus is_active_inIBAPANTHER:PTN000478716 and SGD:S000004427150520179 GO_CentralGO_REF:0000033

Molecular Function

  

1 to 20 of 74 rows
Object Symbol
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Term
Qualifier
Evidence
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Reference
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Source
Original Reference(s)
TSR2HumanAbnormal heart morphology  IAGP 8699517 HPOORPHA:124
TSR2HumanAbnormality of the genitourinary system  IAGP 8699517 HPOORPHA:124
TSR2HumanAbnormality of the head  IAGP 8699517 HPOORPHA:124
TSR2HumanAbnormality of the thenar eminence  IAGP 8699517 HPOORPHA:124
TSR2HumanAbnormality of the upper limb  IAGP 8699517 HPOORPHA:124
TSR2HumanAbsent thumb  IAGP 8699517 HPOORPHA:124
TSR2HumanAcute myeloid leukemia  IAGP 8699517 HPOORPHA:124
TSR2HumanAdenocarcinoma of the colon  IAGP 8699517 HPOORPHA:124
TSR2HumanAtresia of the external auditory canal  IAGP 8699517 HPOMIM:300946 and PMID:24942156
TSR2HumanAtrial septal defect  IAGP 8699517 HPOORPHA:124
TSR2HumanCleft lip  IAGP 8699517 HPOORPHA:124
TSR2HumanCleft palate  IAGP 8699517 HPOMIM:300946 and PMID:24942156
TSR2HumanCleft soft palate  IAGP 8699517 HPOORPHA:124
TSR2HumanCoarctation of aorta  IAGP 8699517 HPOORPHA:124
TSR2HumanConductive hearing impairment  IAGP 8699517 HPOMIM:300946 and PMID:24942156
TSR2HumanCongenital onset  IAGP 8699517 HPOMIM:300946 and PMID:24942156
TSR2HumanDepressed nasal bridge  IAGP 8699517 HPOORPHA:124
TSR2HumanDevelopmental cataract  IAGP 8699517 HPOORPHA:124
TSR2HumanDevelopmental glaucoma  IAGP 8699517 HPOORPHA:124
TSR2HumanDownslanted palpebral fissures  IAGP 8699517 HPOMIM:300946 and PMID:24942156
1 to 20 of 74 rows
Object Symbol
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Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
TSR2HumanAutism  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: AutismClinVarPMID:21681106 and PMID:30208311

#
Reference Title
Reference Citation
1. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. RGD HPO Phenotype Annotation Pipeline RGD automated import pipeline for human HPO-to-gene-to-disease annotations
PMID:9417904   PMID:12477932   PMID:16189514   PMID:17207965   PMID:19060904   PMID:19615732   PMID:20301769   PMID:20562859   PMID:21790011   PMID:21873635   PMID:22810586   PMID:24942156  
PMID:25416956   PMID:26344197   PMID:26760575   PMID:30201955   PMID:32296183   PMID:33226137   PMID:33961781   PMID:34373451   PMID:35271311   PMID:35944360   PMID:38814181   PMID:38862449  



TSR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X54,440,404 - 54,448,032 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX54,440,404 - 54,448,032 (+)EnsemblGRCh38hg38GRCh38
GRCh37X54,466,837 - 54,474,465 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X54,483,578 - 54,488,455 (+)NCBINCBI36Build 36hg18NCBI36
CeleraX58,299,414 - 58,304,291 (+)NCBICelera
Cytogenetic MapXp11.22NCBI
HuRefX51,518,075 - 51,522,307 (+)NCBIHuRef
CHM1_1X54,457,507 - 54,462,384 (+)NCBICHM1_1
T2T-CHM13v2.0X53,731,260 - 53,738,888 (+)NCBIT2T-CHM13v2.0
Tsr2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X149,870,090 - 149,879,539 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX149,870,090 - 149,879,539 (-)EnsemblGRCm39 Ensembl
GRCm38X151,087,094 - 151,096,543 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX151,087,094 - 151,096,543 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X147,521,637 - 147,531,086 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X146,428,025 - 146,437,234 (-)NCBIMGSCv36mm8
CeleraX133,307,018 - 133,317,146 (+)NCBICelera
Cytogenetic MapXF3NCBI
cM MapX68.46NCBI
Tsr2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X23,507,141 - 23,515,711 (-)NCBIGRCr8
mRatBN7.2X20,064,102 - 20,072,673 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX20,064,103 - 20,072,620 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX17,502,402 - 17,510,917 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X22,612,665 - 22,621,180 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X20,593,349 - 20,601,866 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X20,141,406 - 20,146,082 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX20,144,432 - 20,232,639 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X20,968,908 - 20,977,426 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
CeleraX20,321,354 - 20,329,877 (-)NCBICelera
Cytogenetic MapXq12NCBI
Tsr2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554751,698,136 - 1,703,404 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554751,698,926 - 1,703,404 (+)NCBIChiLan1.0ChiLan1.0
TSR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X55,829,012 - 55,833,962 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X55,832,617 - 55,837,566 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X46,643,659 - 46,648,829 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X54,875,679 - 54,883,324 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX54,875,696 - 54,880,809 (+)Ensemblpanpan1.1panPan2
TSR2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X46,189,810 - 46,194,949 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX46,189,870 - 46,296,966 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX37,578,758 - 37,583,898 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X46,511,181 - 46,516,318 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX46,511,246 - 46,516,313 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X46,008,993 - 46,014,130 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X46,459,373 - 46,464,505 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X46,526,670 - 46,531,808 (+)NCBIUU_Cfam_GSD_1.0
Tsr2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X39,010,776 - 39,015,724 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367511,350,481 - 1,358,110 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367511,350,542 - 1,355,449 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TSR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX47,186,643 - 47,192,452 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X47,186,610 - 47,192,465 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X53,043,987 - 53,049,415 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TSR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X50,532,958 - 50,555,179 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660864,515,626 - 4,523,216 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tsr2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249092,310,718 - 2,315,538 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249092,311,494 - 2,316,358 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in TSR2
109 total Variants

Predicted Target Of
Summary Value
Count of predictions:509
Count of miRNA genes:404
Interacting mature miRNAs:452
Transcripts:ENST00000375151
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

SGC30464  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X54,471,925 - 54,472,039UniSTSGRCh37
Build 36X54,488,650 - 54,488,764RGDNCBI36
CeleraX58,304,486 - 58,304,600RGD
Cytogenetic MapXp11.21UniSTS
Cytogenetic MapXp11.22UniSTS
HuRefX51,522,502 - 51,522,616UniSTS
GeneMap99-GB4 RH MapX174.07UniSTS
Whitehead-RH MapX98.2UniSTS
SHGC-24021  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X54,471,967 - 54,472,090UniSTSGRCh37
Build 36X54,488,692 - 54,488,815RGDNCBI36
CeleraX58,304,528 - 58,304,651RGD
Cytogenetic MapXp11.21UniSTS
Cytogenetic MapXp11.22UniSTS
HuRefX51,522,544 - 51,522,667UniSTS
GeneMap99-G3 RH MapX1571.0UniSTS
RH75708  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X54,471,669 - 54,471,865UniSTSGRCh37
Build 36X54,488,394 - 54,488,590RGDNCBI36
CeleraX58,304,230 - 58,304,426RGD
Cytogenetic MapXp11.21UniSTS
Cytogenetic MapXp11.22UniSTS
HuRefX51,522,246 - 51,522,442UniSTS
G35013  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X54,471,731 - 54,471,847UniSTSGRCh37
Build 36X54,488,456 - 54,488,572RGDNCBI36
CeleraX58,304,292 - 58,304,408RGD
Cytogenetic MapXp11.21UniSTS
Cytogenetic MapXp11.22UniSTS
HuRefX51,522,308 - 51,522,424UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2253 4974 1726 2351 6 624 1951 465 2270 7306 6472 53 3734 1 852 1744 1617 174 1



Ensembl Acc Id: ENST00000375151   ⟹   ENSP00000364293
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX54,440,404 - 54,448,032 (+)Ensembl
RefSeq Acc Id: NM_001346789   ⟹   NP_001333718
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X54,440,404 - 54,448,032 (+)NCBI
T2T-CHM13v2.0X53,731,260 - 53,738,888 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001346790   ⟹   NP_001333719
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X54,440,404 - 54,448,032 (+)NCBI
T2T-CHM13v2.0X53,731,260 - 53,738,888 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001346791   ⟹   NP_001333720
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X54,440,404 - 54,448,032 (+)NCBI
T2T-CHM13v2.0X53,731,260 - 53,738,888 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001346792   ⟹   NP_001333721
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X54,440,404 - 54,448,032 (+)NCBI
T2T-CHM13v2.0X53,731,260 - 53,738,888 (+)NCBI
Sequence:
RefSeq Acc Id: NM_058163   ⟹   NP_477511
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X54,440,404 - 54,448,032 (+)NCBI
GRCh37X54,466,853 - 54,471,730 (+)RGD
Build 36X54,483,578 - 54,488,455 (+)NCBI Archive
CeleraX58,299,414 - 58,304,291 (+)RGD
HuRefX51,518,075 - 51,522,307 (+)ENTREZGENE
CHM1_1X54,457,507 - 54,462,384 (+)NCBI
T2T-CHM13v2.0X53,731,260 - 53,738,888 (+)NCBI
Sequence:
RefSeq Acc Id: NP_477511   ⟸   NM_058163
- Peptide Label: isoform a
- UniProtKB: Q969E8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001333720   ⟸   NM_001346791
- Peptide Label: isoform c
- Sequence:
RefSeq Acc Id: NP_001333719   ⟸   NM_001346790
- Peptide Label: isoform c
- Sequence:
RefSeq Acc Id: NP_001333718   ⟸   NM_001346789
- Peptide Label: isoform b
- Sequence:
RefSeq Acc Id: NP_001333721   ⟸   NM_001346792
- Peptide Label: isoform c
- Sequence:

Name Modeler Protein Id AA Range Protein Structure
AF-Q969E8-F1-model_v2 AlphaFold Q969E8 1-191 view protein structure

RGD ID:13605402
Promoter ID:EPDNEW_H28885
Type:multiple initiation site
Name:TSR2_1
Description:TSR2, ribosome maturation factor
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X54,440,406 - 54,440,466EPDNEW
RGD ID:6809345
Promoter ID:HG_KWN:66965
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000056802,   UC004DTF.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36X54,483,451 - 54,483,957 (+)MPROMDB


1 to 15 of 15 rows
Database
Acc Id
Source(s)
COSMIC TSR2 COSMIC
Ensembl Genes ENSG00000158526 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000375151 ENTREZGENE
  ENST00000375151.5 UniProtKB/Swiss-Prot
GTEx ENSG00000158526 GTEx
HGNC ID HGNC:25455 ENTREZGENE
Human Proteome Map TSR2 Human Proteome Map
InterPro Pre-rRNA_process_TSR2 UniProtKB/Swiss-Prot
KEGG Report hsa:90121 UniProtKB/Swiss-Prot
NCBI Gene 90121 ENTREZGENE
OMIM 300945 OMIM
PANTHER PTHR21250 UniProtKB/Swiss-Prot
Pfam WGG UniProtKB/Swiss-Prot
PharmGKB PA145147877 PharmGKB
UniProt Q969E8 ENTREZGENE, UniProtKB/Swiss-Prot
1 to 15 of 15 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-01-29 TSR2  TSR2 ribosome maturation factor    TSR2, ribosome maturation factor  Symbol and/or name change 5135510 APPROVED
2016-04-26 TSR2  TSR2, ribosome maturation factor    TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED