CCDC9B (coiled-coil domain containing 9B) - Rat Genome Database

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Gene: CCDC9B (coiled-coil domain containing 9B) Homo sapiens
Analyze
Symbol: CCDC9B
Name: coiled-coil domain containing 9B
RGD ID: 1602266
HGNC Page HGNC:33488
Description: Enables RNA binding activity.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: C15orf52; chromosome 15 open reading frame 52; coiled-coil domain-containing protein 9B; DKFZp686N1468; FLJ43339; hypothetical protein LOC388115; uncharacterized protein C15orf52
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381540,331,452 - 40,340,939 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1540,331,452 - 40,340,939 (-)EnsemblGRCh38hg38GRCh38
GRCh371540,623,653 - 40,633,140 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361538,410,945 - 38,420,460 (-)NCBINCBI36Build 36hg18NCBI36
Celera1517,389,636 - 17,399,151 (-)NCBICelera
Cytogenetic Map15q15.1NCBI
HuRef1517,467,024 - 17,476,543 (-)NCBIHuRef
CHM1_11540,743,516 - 40,753,031 (-)NCBICHM1_1
T2T-CHM13v2.01538,138,324 - 38,147,811 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function
RNA binding  (HDA)

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:12477932   PMID:16344560   PMID:22658674   PMID:24457600   PMID:26496610   PMID:26777405   PMID:27684187   PMID:32513696   PMID:34316702   PMID:34732716   PMID:36232890  
PMID:36526897   PMID:37689310  


Genomics

Comparative Map Data
CCDC9B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381540,331,452 - 40,340,939 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1540,331,452 - 40,340,939 (-)EnsemblGRCh38hg38GRCh38
GRCh371540,623,653 - 40,633,140 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361538,410,945 - 38,420,460 (-)NCBINCBI36Build 36hg18NCBI36
Celera1517,389,636 - 17,399,151 (-)NCBICelera
Cytogenetic Map15q15.1NCBI
HuRef1517,467,024 - 17,476,543 (-)NCBIHuRef
CHM1_11540,743,516 - 40,753,031 (-)NCBICHM1_1
T2T-CHM13v2.01538,138,324 - 38,147,811 (-)NCBIT2T-CHM13v2.0
Ccdc9b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392118,584,626 - 118,593,421 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2118,584,639 - 118,593,142 (-)EnsemblGRCm39 Ensembl
GRCm382118,754,145 - 118,762,947 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2118,754,158 - 118,762,661 (-)EnsemblGRCm38mm10GRCm38
MGSCv372118,579,881 - 118,588,397 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362118,445,599 - 118,453,107 (-)NCBIMGSCv36mm8
Celera2119,908,822 - 119,917,331 (-)NCBICelera
Cytogenetic Map2E5NCBI
cM Map259.45NCBI
Ccdc9b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83126,190,039 - 126,198,931 (-)NCBIGRCr8
mRatBN7.23105,736,120 - 105,745,039 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3105,739,174 - 105,744,697 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.03110,548,238 - 110,557,096 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3110,551,233 - 110,556,813 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03117,088,852 - 117,097,427 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43105,260,699 - 105,266,052 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3104,650,266 - 104,659,124 (-)NCBICelera
Cytogenetic Map3q35NCBI
Ccdc9b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554167,257,232 - 7,267,171 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554167,258,446 - 7,268,342 (-)NCBIChiLan1.0ChiLan1.0
CCDC9B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21629,565,417 - 29,574,915 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11533,716,865 - 33,726,375 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01519,265,502 - 19,275,023 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11537,520,475 - 37,529,968 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1537,520,475 - 37,529,968 (-)Ensemblpanpan1.1panPan2
CCDC9B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1307,514,029 - 7,523,076 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl307,516,710 - 7,523,357 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha307,567,936 - 7,576,983 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0307,639,833 - 7,648,881 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl307,639,833 - 7,648,874 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1307,564,367 - 7,573,415 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0307,670,318 - 7,679,353 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0307,799,099 - 7,808,147 (-)NCBIUU_Cfam_GSD_1.0
Ccdc9b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864085,947,901 - 85,956,972 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364713,795,343 - 3,805,010 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364713,795,964 - 3,805,023 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC9B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1130,975,347 - 130,983,969 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11130,974,635 - 130,983,973 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21146,059,846 - 146,069,050 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC9B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12642,647,463 - 42,683,869 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2642,674,301 - 42,680,175 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604898,280,644 - 98,290,293 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc9b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248047,636,587 - 7,642,103 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248047,633,390 - 7,642,451 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CCDC9B
7 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 15q14-15.1(chr15:36531993-40787538)x3 copy number gain See cases [RCV000052341] Chr15:36531993..40787538 [GRCh38]
Chr15:36824194..41079736 [GRCh37]
Chr15:34611486..38867028 [NCBI36]
Chr15:15q14-15.1		 pathogenic
NM_207380.2(C15orf52):c.321C>T (p.Leu107=) single nucleotide variant Malignant melanoma [RCV000070745] Chr15:40339554 [GRCh38]
Chr15:40631755 [GRCh37]
Chr15:38419047 [NCBI36]
Chr15:15q15.1		 not provided
GRCh37/hg19 15q11.2-26.3(chr15:20733395-102511616)x4 copy number gain See cases [RCV000447765] Chr15:20733395..102511616 [GRCh37]
Chr15:15q11.2-26.3		 pathogenic
GRCh37/hg19 15q11.2-26.3(chr15:22770422-102429112)x3 copy number gain See cases [RCV000510717] Chr15:22770422..102429112 [GRCh37]
Chr15:15q11.2-26.3		 pathogenic
GRCh37/hg19 15q11.2-26.3(chr15:22770422-102429112) copy number gain See cases [RCV000512019] Chr15:22770422..102429112 [GRCh37]
Chr15:15q11.2-26.3		 pathogenic
Single allele duplication not provided [RCV000677926] Chr15:31115047..102354857 [GRCh37]
Chr15:15q13.2-26.3		 pathogenic
GRCh37/hg19 15q14-15.1(chr15:38170429-40775075)x1 copy number loss not provided [RCV000683683] Chr15:38170429..40775075 [GRCh37]
Chr15:15q14-15.1		 pathogenic
GRCh37/hg19 15q14-15.1 chr15:34638237..42057083 complex variant complex Spindle cell sarcoma [RCV000714282] Chr15:34640169..42054561 [GRCh37]
Chr15:15q14-15.1		 pathogenic
GRCh37/hg19 15q11.1-26.3(chr15:20016811-102493540)x3 copy number gain not provided [RCV000751155] Chr15:20016811..102493540 [GRCh37]
Chr15:15q11.1-26.3		 pathogenic
GRCh37/hg19 15q11.1-26.3(chr15:20071673-102461162)x3 copy number gain not provided [RCV000751156] Chr15:20071673..102461162 [GRCh37]
Chr15:15q11.1-26.3		 pathogenic
GRCh37/hg19 15q15.1(chr15:40464942-41196807)x4 copy number gain not provided [RCV001259208] Chr15:40464942..41196807 [GRCh37]
Chr15:15q15.1		 uncertain significance
NC_000015.9:g.(?_32964879)_(91358519_?)dup duplication Bloom syndrome [RCV001343104]|Familial colorectal cancer [RCV001325176] Chr15:32964879..91358519 [GRCh37]
Chr15:15q13.3-26.1		 uncertain significance
NM_207380.3(CCDC9B):c.201C>T (p.Gly67=) single nucleotide variant not provided [RCV003400858] Chr15:40339542 [GRCh38]
Chr15:40631743 [GRCh37]
Chr15:15q15.1		 likely benign
GRCh37/hg19 15q11.2-21.2(chr15:22770421-50347130)x3 copy number gain not specified [RCV003987108] Chr15:22770421..50347130 [GRCh37]
Chr15:15q11.2-21.2		 pathogenic
NM_207380.3(CCDC9B):c.778T>A (p.Leu260Met) single nucleotide variant not specified [RCV004430487] Chr15:40336778 [GRCh38]
Chr15:40628979 [GRCh37]
Chr15:15q15.1		 uncertain significance
NM_207380.3(CCDC9B):c.1282G>A (p.Val428Ile) single nucleotide variant not specified [RCV004430485] Chr15:40335349 [GRCh38]
Chr15:40627550 [GRCh37]
Chr15:15q15.1		 uncertain significance
NM_207380.3(CCDC9B):c.1385G>A (p.Arg462Gln) single nucleotide variant not specified [RCV004430486] Chr15:40335246 [GRCh38]
Chr15:40627447 [GRCh37]
Chr15:15q15.1		 uncertain significance
NM_207380.3(CCDC9B):c.5A>T (p.His2Leu) single nucleotide variant not specified [RCV004430484] Chr15:40340815 [GRCh38]
Chr15:40633016 [GRCh37]
Chr15:15q15.1		 uncertain significance
NC_000015.9:g.(?_38545387)_(42105565_?)dup duplication Mosaic variegated aneuploidy syndrome 1 [RCV004583016] Chr15:38545387..42105565 [GRCh37]
Chr15:15q14-15.1		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4529
Count of miRNA genes:1202
Interacting mature miRNAs:1543
Transcripts:ENST00000382688, ENST00000397536, ENST00000557973, ENST00000558858, ENST00000558912, ENST00000559313, ENST00000560922
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
407417701GWAS1066677_HDrugs used in diabetes use measurement QTL GWAS1066677 (human)6e-11Drugs used in diabetes use measurement154034093740340938Human
407404821GWAS1053797_Htype 2 diabetes mellitus QTL GWAS1053797 (human)1e-17type 2 diabetes mellitus154034093740340938Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human

Markers in Region
RH78611  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371540,623,902 - 40,624,029UniSTSGRCh37
Build 361538,411,194 - 38,411,321RGDNCBI36
Celera1517,389,885 - 17,390,012RGD
Cytogenetic Map15q15.1UniSTS
HuRef1517,467,273 - 17,467,400UniSTS
GeneMap99-GB4 RH Map15127.27UniSTS
NCBI RH Map1590.1UniSTS
MARC_23447-23448:1027106168:1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371540,632,164 - 40,633,053UniSTSGRCh37
Build 361538,419,456 - 38,420,345RGDNCBI36
Celera1517,398,147 - 17,399,036RGD
HuRef1517,475,539 - 17,476,428UniSTS
WI-16206  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map15q15.1UniSTS
GeneMap99-GB4 RH Map15128.95UniSTS
Whitehead-RH Map1580.7UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2438 2788 2250 4958 1724 2346 5 624 1822 465 2268 7176 6343 52 3721 1 851 1739 1612 174 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_207380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC013356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK124643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK125329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK126035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK126485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC015670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC140897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC140902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM716672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ690903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU618720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR749408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA106198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA892533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000382688
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1540,331,452 - 40,338,976 (-)Ensembl
Ensembl Acc Id: ENST00000397536   ⟹   ENSP00000380670
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1540,331,452 - 40,340,939 (-)Ensembl
Ensembl Acc Id: ENST00000557973
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1540,339,588 - 40,340,920 (-)Ensembl
Ensembl Acc Id: ENST00000558858   ⟹   ENSP00000452677
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1540,335,633 - 40,338,040 (-)Ensembl
Ensembl Acc Id: ENST00000558912
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1540,336,559 - 40,340,638 (-)Ensembl
Ensembl Acc Id: ENST00000559313   ⟹   ENSP00000453969
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1540,331,452 - 40,338,133 (-)Ensembl
Ensembl Acc Id: ENST00000560922   ⟹   ENSP00000453500
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1540,337,850 - 40,340,042 (-)Ensembl
RefSeq Acc Id: NM_207380   ⟹   NP_997263
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381540,331,452 - 40,340,939 (-)NCBI
GRCh371540,623,653 - 40,633,168 (-)RGD
GRCh371540,623,653 - 40,633,168 (-)NCBI
Build 361538,410,945 - 38,420,460 (-)NCBI Archive
Celera1517,389,636 - 17,399,151 (-)RGD
HuRef1517,467,024 - 17,476,543 (-)ENTREZGENE
CHM1_11540,743,516 - 40,753,031 (-)NCBI
T2T-CHM13v2.01538,138,324 - 38,147,811 (-)NCBI
Sequence:
RefSeq Acc Id: NP_997263   ⟸   NM_207380
- UniProtKB: Q6ZUT6 (UniProtKB/Swiss-Prot),   Q6ZU22 (UniProtKB/Swiss-Prot),   Q6ZTM3 (UniProtKB/Swiss-Prot),   Q68DG9 (UniProtKB/Swiss-Prot),   B9EIQ8 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSP00000452677   ⟸   ENST00000558858
Ensembl Acc Id: ENSP00000453969   ⟸   ENST00000559313
Ensembl Acc Id: ENSP00000453500   ⟸   ENST00000560922
Ensembl Acc Id: ENSP00000380670   ⟸   ENST00000397536

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6ZUT6-F1-model_v2 AlphaFold Q6ZUT6 1-534 view protein structure

Promoters
RGD ID:6815104
Promoter ID:HG_MRA:5180
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562
Transcripts:AK124643,   BC015670
Position:
Human AssemblyChrPosition (strand)Source
Build 361538,413,516 - 38,414,016 (-)MPROMDB
RGD ID:6792151
Promoter ID:HG_KWN:21035
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell
Transcripts:OTTHUMT00000252247
Position:
Human AssemblyChrPosition (strand)Source
Build 361538,417,446 - 38,417,946 (-)MPROMDB
RGD ID:6792148
Promoter ID:HG_KWN:21036
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3,   K562
Transcripts:ENST00000397535,   NM_207380,   UC001ZLI.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361538,420,159 - 38,420,659 (-)MPROMDB
RGD ID:7229091
Promoter ID:EPDNEW_H20291
Type:initiation region
Name:C15orf52_2
Description:chromosome 15 open reading frame 52
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H20292  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381540,338,070 - 40,338,130EPDNEW
RGD ID:7229093
Promoter ID:EPDNEW_H20292
Type:initiation region
Name:C15orf52_1
Description:chromosome 15 open reading frame 52
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H20291  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381540,338,986 - 40,339,046EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:33488 AgrOrtholog
COSMIC CCDC9B COSMIC
Ensembl Genes ENSG00000188549 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000397536 ENTREZGENE
  ENST00000397536.7 UniProtKB/Swiss-Prot
  ENST00000560922.1 UniProtKB/TrEMBL
GTEx ENSG00000188549 GTEx
HGNC ID HGNC:33488 ENTREZGENE
Human Proteome Map CCDC9B Human Proteome Map
InterPro DUF4594 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:388115 UniProtKB/Swiss-Prot
NCBI Gene 388115 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 9B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR15635 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF4594 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA162378161 PharmGKB
UniProt B9EIQ8 ENTREZGENE
  CCD9B_HUMAN UniProtKB/Swiss-Prot
  H0YM82_HUMAN UniProtKB/TrEMBL
  Q68DG9 ENTREZGENE
  Q6ZTM3 ENTREZGENE
  Q6ZU22 ENTREZGENE
  Q6ZUT6 ENTREZGENE
UniProt Secondary B9EIQ8 UniProtKB/Swiss-Prot
  Q68DG9 UniProtKB/Swiss-Prot
  Q6ZTM3 UniProtKB/Swiss-Prot
  Q6ZU22 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-10-17 CCDC9B  coiled-coil domain containing 9B  C15orf52  chromosome 15 open reading frame 52  Symbol and/or name change 5135510 APPROVED