NUB1 (negative regulator of ubiquitin like proteins 1) - Rat Genome Database

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Gene: NUB1 (negative regulator of ubiquitin like proteins 1) Homo sapiens
Analyze
Symbol: NUB1
Name: negative regulator of ubiquitin like proteins 1
RGD ID: 1602112
HGNC Page HGNC:17623
Description: Involved in several processes, including positive regulation of proteasomal ubiquitin-dependent protein catabolic process; response to tumor necrosis factor; and response to type II interferon. Located in cytosol; nucleolus; and nucleoplasm.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: BS4; NEDD8 ultimate buster 1; NEDD8 ultimate buster-1; negative regulator of ubiquitin-like proteins 1; NUB1L; NY-REN-18 antigen; NYREN18; renal carcinoma antigen NY-REN-18
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387151,341,812 - 151,378,449 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7151,341,772 - 151,378,449 (+)EnsemblGRCh38hg38GRCh38
GRCh377151,038,898 - 151,075,535 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367150,669,791 - 150,706,468 (+)NCBINCBI36Build 36hg18NCBI36
Celera7145,596,247 - 145,632,781 (+)NCBICelera
Cytogenetic Map7q36.1NCBI
HuRef7144,850,514 - 144,887,070 (+)NCBIHuRef
CHM1_17151,047,250 - 151,083,821 (+)NCBICHM1_1
T2T-CHM13v2.07152,514,799 - 152,551,295 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27150,368,354 - 150,404,911 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IDA,TAS)
Lewy body  (ISO)
nucleolus  (IDA)
nucleoplasm  (IDA)
nucleus  (IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10508479   PMID:11259415   PMID:11585840   PMID:12374762   PMID:12477932   PMID:12690205   PMID:12816948   PMID:12853948   PMID:14499622   PMID:14638743   PMID:14757770   PMID:15009209  
PMID:15081406   PMID:15146197   PMID:15180275   PMID:15347646   PMID:15489334   PMID:16052170   PMID:16171779   PMID:16344560   PMID:16503656   PMID:16707496   PMID:16877356   PMID:17549501  
PMID:18408180   PMID:19166848   PMID:19763160   PMID:20101219   PMID:20160729   PMID:21873635   PMID:21937912   PMID:21988832   PMID:22347407   PMID:22434192   PMID:22612509   PMID:22965877  
PMID:22990118   PMID:23525043   PMID:23649778   PMID:24019527   PMID:24100225   PMID:24811749   PMID:25416956   PMID:25422469   PMID:25505242   PMID:26260793   PMID:26496610   PMID:26760575  
PMID:26972000   PMID:27214791   PMID:28099510   PMID:28514442   PMID:29117863   PMID:31006160   PMID:31091453   PMID:31691796   PMID:32235678   PMID:32703484   PMID:33742100   PMID:33961781  
PMID:34642328   PMID:34672954   PMID:34732716   PMID:34847450   PMID:35256949   PMID:35271311   PMID:35831314   PMID:35944360   PMID:36215168   PMID:36931259   PMID:37188463   PMID:37317656  
PMID:37704626   PMID:37827155  


Genomics

Comparative Map Data
NUB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387151,341,812 - 151,378,449 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7151,341,772 - 151,378,449 (+)EnsemblGRCh38hg38GRCh38
GRCh377151,038,898 - 151,075,535 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367150,669,791 - 150,706,468 (+)NCBINCBI36Build 36hg18NCBI36
Celera7145,596,247 - 145,632,781 (+)NCBICelera
Cytogenetic Map7q36.1NCBI
HuRef7144,850,514 - 144,887,070 (+)NCBIHuRef
CHM1_17151,047,250 - 151,083,821 (+)NCBICHM1_1
T2T-CHM13v2.07152,514,799 - 152,551,295 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27150,368,354 - 150,404,911 (+)NCBI
Nub1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39524,890,813 - 24,915,376 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl524,890,530 - 24,915,376 (+)EnsemblGRCm39 Ensembl
GRCm38524,685,815 - 24,710,378 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl524,685,532 - 24,710,378 (+)EnsemblGRCm38mm10GRCm38
MGSCv37524,191,633 - 24,216,373 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36524,196,041 - 24,220,443 (+)NCBIMGSCv36mm8
Celera521,642,444 - 21,667,264 (+)NCBICelera
Cytogenetic Map5A3NCBI
cM Map511.93NCBI
Nub1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8411,335,376 - 11,366,263 (-)NCBIGRCr8
mRatBN7.2410,442,917 - 10,473,689 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl410,442,917 - 10,473,694 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx415,589,502 - 15,619,758 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0411,409,700 - 11,439,956 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.049,761,499 - 9,791,741 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.046,950,870 - 6,981,400 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl46,951,478 - 6,978,073 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.046,964,480 - 6,994,708 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.445,820,488 - 5,850,809 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.145,820,488 - 5,850,809 (-)NCBI
Celera46,058,478 - 6,088,841 (-)NCBICelera
Cytogenetic Map4q11NCBI
Nub1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554915,709,791 - 5,739,079 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554915,709,791 - 5,737,620 (+)NCBIChiLan1.0ChiLan1.0
NUB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26187,762,530 - 187,799,621 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1739,772,796 - 39,809,887 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07142,927,730 - 142,964,475 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17155,079,171 - 155,115,913 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7155,079,243 - 155,114,676 (+)Ensemblpanpan1.1panPan2
NUB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11615,355,237 - 15,382,284 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1615,352,476 - 15,381,095 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1615,962,876 - 15,989,492 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01617,077,383 - 17,104,127 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1617,075,097 - 17,104,127 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11615,449,341 - 15,475,957 (+)NCBIUMICH_Zoey_3.1
Nub1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244051186,146,984 - 6,177,063 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365276,726,357 - 6,755,318 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365276,726,363 - 6,756,445 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl185,899,568 - 5,928,884 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1185,899,566 - 5,928,981 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2186,247,107 - 6,274,794 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NUB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121119,525,757 - 119,559,412 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21119,525,932 - 119,560,886 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607215,496,939 - 15,530,260 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nub1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248005,315,381 - 5,345,801 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248005,314,203 - 5,345,301 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NUB1
13 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 7q32.1-36.3(chr7:129310166-159282390)x3 copy number gain See cases [RCV000050876] Chr7:129310166..159282390 [GRCh38]
Chr7:128950007..159075079 [GRCh37]
Chr7:128737243..158767840 [NCBI36]
Chr7:7q32.1-36.3
pathogenic
GRCh38/hg38 7q36.1(chr7:150319864-152674271)x1 copy number loss See cases [RCV000050552] Chr7:150319864..152674271 [GRCh38]
Chr7:150016953..152371356 [GRCh37]
Chr7:149647886..152002289 [NCBI36]
Chr7:7q36.1
pathogenic
GRCh38/hg38 7q35-36.1(chr7:143884559-152674271)x1 copy number loss See cases [RCV000050750] Chr7:143884559..152674271 [GRCh38]
Chr7:143581652..152371356 [GRCh37]
Chr7:143212585..152002289 [NCBI36]
Chr7:7q35-36.1
pathogenic
GRCh38/hg38 7q32.3-36.3(chr7:132850196-159325876)x3 copy number gain See cases [RCV000051101] Chr7:132850196..159325876 [GRCh38]
Chr7:132534956..159118566 [GRCh37]
Chr7:132185496..158811327 [NCBI36]
Chr7:7q32.3-36.3
pathogenic
GRCh38/hg38 7q35-36.3(chr7:147250465-159325876)x1 copy number loss See cases [RCV000051108] Chr7:147250465..159325876 [GRCh38]
Chr7:146947557..159118566 [GRCh37]
Chr7:146578490..158811327 [NCBI36]
Chr7:7q35-36.3
pathogenic
GRCh38/hg38 7p22.3-q36.3(chr7:53985-159282531)x1 copy number loss See cases [RCV000052250] Chr7:53985..159282531 [GRCh38]
Chr7:53985..159075220 [GRCh37]
Chr7:149068..158767981 [NCBI36]
Chr7:7p22.3-q36.3
pathogenic
GRCh38/hg38 7q33-36.3(chr7:136309982-159307523)x3 copy number gain See cases [RCV000053576] Chr7:136309982..159307523 [GRCh38]
Chr7:135994730..159100212 [GRCh37]
Chr7:135645270..158792973 [NCBI36]
Chr7:7q33-36.3
pathogenic
GRCh38/hg38 7q34-36.3(chr7:142021716-159325876)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053577]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053577]|See cases [RCV000053577] Chr7:142021716..159325876 [GRCh38]
Chr7:142528609..159118566 [GRCh37]
Chr7:141367985..158811327 [NCBI36]
Chr7:7q34-36.3
pathogenic
GRCh38/hg38 7q35-36.3(chr7:143884559-159282390)x1 copy number loss See cases [RCV000054178] Chr7:143884559..159282390 [GRCh38]
Chr7:143581652..159075079 [GRCh37]
Chr7:143212585..158767840 [NCBI36]
Chr7:7q35-36.3
pathogenic
GRCh38/hg38 7q35-36.3(chr7:145699944-159296617)x1 copy number loss See cases [RCV000054188] Chr7:145699944..159296617 [GRCh38]
Chr7:145397037..159089306 [GRCh37]
Chr7:145027970..158782067 [NCBI36]
Chr7:7q35-36.3
pathogenic
GRCh38/hg38 7q36.1(chr7:148256584-152332535)x1 copy number loss See cases [RCV000054189] Chr7:148256584..152332535 [GRCh38]
Chr7:147953676..152029620 [GRCh37]
Chr7:147584609..151660553 [NCBI36]
Chr7:7q36.1
pathogenic
GRCh38/hg38 7q34-36.3(chr7:139365967-159282531)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000054175]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000054175]|See cases [RCV000054175] Chr7:139365967..159282531 [GRCh38]
Chr7:139050713..159075220 [GRCh37]
Chr7:138701253..158767981 [NCBI36]
Chr7:7q34-36.3
pathogenic
GRCh38/hg38 7q34-36.3(chr7:140754198-159307523)x1 copy number loss See cases [RCV000054176] Chr7:140754198..159307523 [GRCh38]
Chr7:140453998..159100212 [GRCh37]
Chr7:140100467..158792973 [NCBI36]
Chr7:7q34-36.3
pathogenic
GRCh38/hg38 7q34-36.3(chr7:142358524-159282531)x1 copy number loss See cases [RCV000054177] Chr7:142358524..159282531 [GRCh38]
Chr7:142528609..159075220 [GRCh37]
Chr7:141726947..158767981 [NCBI36]
Chr7:7q34-36.3
pathogenic
GRCh38/hg38 7p22.3-q36.3(chr7:54185-159282390)x1 copy number loss See cases [RCV000135401] Chr7:54185..159282390 [GRCh38]
Chr7:54185..159075079 [GRCh37]
Chr7:149268..158767840 [NCBI36]
Chr7:7p22.3-q36.3
pathogenic
GRCh38/hg38 7q36.1-36.2(chr7:151214163-153187462)x1 copy number loss See cases [RCV000134853] Chr7:151214163..153187462 [GRCh38]
Chr7:150911249..152884547 [GRCh37]
Chr7:150542182..152515480 [NCBI36]
Chr7:7q36.1-36.2
pathogenic
GRCh38/hg38 7q35-36.2(chr7:147345844-153833351)x3 copy number gain See cases [RCV000135825] Chr7:147345844..153833351 [GRCh38]
Chr7:147042936..153530436 [GRCh37]
Chr7:146673869..153161369 [NCBI36]
Chr7:7q35-36.2
pathogenic
GRCh38/hg38 7q33-36.2(chr7:137751200-154815582)x3 copy number gain See cases [RCV000136592] Chr7:137751200..154815582 [GRCh38]
Chr7:137435946..154607292 [GRCh37]
Chr7:137086486..154238225 [NCBI36]
Chr7:7q33-36.2
pathogenic
GRCh38/hg38 7q36.1-36.3(chr7:150486071-159335865)x1 copy number loss See cases [RCV000136089] Chr7:150486071..159335865 [GRCh38]
Chr7:150183159..159128555 [GRCh37]
Chr7:149814092..158821316 [NCBI36]
Chr7:7q36.1-36.3
pathogenic
GRCh38/hg38 7q21.3-36.3(chr7:97419852-158923762)x3 copy number gain See cases [RCV000136717] Chr7:97419852..158923762 [GRCh38]
Chr7:97049164..158716453 [GRCh37]
Chr7:96887100..158409214 [NCBI36]
Chr7:7q21.3-36.3
pathogenic
GRCh38/hg38 7q36.1-36.3(chr7:151104277-159325876)x3 copy number gain See cases [RCV000136683] Chr7:151104277..159325876 [GRCh38]
Chr7:150801364..159118566 [GRCh37]
Chr7:150432297..158811327 [NCBI36]
Chr7:7q36.1-36.3
pathogenic
GRCh38/hg38 7q36.1-36.3(chr7:150802801-159335866)x1 copy number loss See cases [RCV000137465] Chr7:150802801..159335866 [GRCh38]
Chr7:150499889..159128556 [GRCh37]
Chr7:150130822..158821317 [NCBI36]
Chr7:7q36.1-36.3
pathogenic
GRCh38/hg38 7q34-36.3(chr7:141960861-159335866)x1 copy number loss See cases [RCV000137256] Chr7:141960861..159335866 [GRCh38]
Chr7:142528609..159128556 [GRCh37]
Chr7:141307130..158821317 [NCBI36]
Chr7:7q34-36.3
pathogenic
GRCh38/hg38 7q35-36.3(chr7:145436544-159331441)x1 copy number loss See cases [RCV000137338] Chr7:145436544..159331441 [GRCh38]
Chr7:145133637..159124131 [GRCh37]
Chr7:144764570..158816892 [NCBI36]
Chr7:7q35-36.3
pathogenic|likely pathogenic
GRCh38/hg38 7q35-36.3(chr7:145250254-159335866)x1 copy number loss See cases [RCV000138005] Chr7:145250254..159335866 [GRCh38]
Chr7:144947347..159128556 [GRCh37]
Chr7:144578280..158821317 [NCBI36]
Chr7:7q35-36.3
pathogenic
GRCh38/hg38 7q33-36.3(chr7:134666829-158591882)x1 copy number loss See cases [RCV000138120] Chr7:134666829..158591882 [GRCh38]
Chr7:134351581..158384574 [GRCh37]
Chr7:134002121..158077335 [NCBI36]
Chr7:7q33-36.3
pathogenic
GRCh38/hg38 7q35-36.3(chr7:146047157-157522158)x1 copy number loss See cases [RCV000137781] Chr7:146047157..157522158 [GRCh38]
Chr7:145744250..157314852 [GRCh37]
Chr7:145375183..157007613 [NCBI36]
Chr7:7q35-36.3
pathogenic
GRCh38/hg38 7q31.32-36.3(chr7:121863759-159335865)x3 copy number gain See cases [RCV000138847] Chr7:121863759..159335865 [GRCh38]
Chr7:121503813..159128555 [GRCh37]
Chr7:121291049..158821316 [NCBI36]
Chr7:7q31.32-36.3
pathogenic
GRCh38/hg38 7q36.1-36.2(chr7:150113232-154162779)x3 copy number gain See cases [RCV000138566] Chr7:150113232..154162779 [GRCh38]
Chr7:149810321..153859864 [GRCh37]
Chr7:149441254..153490797 [NCBI36]
Chr7:7q36.1-36.2
likely pathogenic
GRCh38/hg38 7q32.3-36.3(chr7:132444095-159335866)x3 copy number gain See cases [RCV000139654] Chr7:132444095..159335866 [GRCh38]
Chr7:132128854..159128556 [GRCh37]
Chr7:131779394..158821317 [NCBI36]
Chr7:7q32.3-36.3
pathogenic
GRCh38/hg38 7q36.1-36.2(chr7:150275734-153342804)x3 copy number gain See cases [RCV000139660] Chr7:150275734..153342804 [GRCh38]
Chr7:149972823..153039889 [GRCh37]
Chr7:149603756..152670822 [NCBI36]
Chr7:7q36.1-36.2
uncertain significance
GRCh38/hg38 7q31.2-36.3(chr7:115459015-159325817)x3 copy number gain See cases [RCV000141413] Chr7:115459015..159325817 [GRCh38]
Chr7:115099069..159118507 [GRCh37]
Chr7:114886305..158811268 [NCBI36]
Chr7:7q31.2-36.3
pathogenic
GRCh38/hg38 7q32.3-36.3(chr7:131228764-159335866)x3 copy number gain See cases [RCV000142802] Chr7:131228764..159335866 [GRCh38]
Chr7:130913523..159128556 [GRCh37]
Chr7:130564063..158821317 [NCBI36]
Chr7:7q32.3-36.3
pathogenic
GRCh38/hg38 7q36.1-36.3(chr7:150260297-159325876)x1 copy number loss See cases [RCV000142592] Chr7:150260297..159325876 [GRCh38]
Chr7:149957386..159118566 [GRCh37]
Chr7:149588319..158811327 [NCBI36]
Chr7:7q36.1-36.3
pathogenic
GRCh38/hg38 7q32.3-36.3(chr7:131171478-159327017)x3 copy number gain See cases [RCV000143754] Chr7:131171478..159327017 [GRCh38]
Chr7:130856237..159119707 [GRCh37]
Chr7:130506777..158812468 [NCBI36]
Chr7:7q32.3-36.3
pathogenic
GRCh38/hg38 7q32.3-36.3(chr7:132438072-159327017)x3 copy number gain See cases [RCV000143707] Chr7:132438072..159327017 [GRCh38]
Chr7:132122831..159119707 [GRCh37]
Chr7:131773371..158812468 [NCBI36]
Chr7:7q32.3-36.3
pathogenic
GRCh38/hg38 7q35-36.3(chr7:147144002-159327017)x1 copy number loss See cases [RCV000143503] Chr7:147144002..159327017 [GRCh38]
Chr7:146841094..159119707 [GRCh37]
Chr7:146472027..158812468 [NCBI36]
Chr7:7q35-36.3
pathogenic
GRCh37/hg19 7q33-36.3(chr7:137589621-159119707)x3 copy number gain See cases [RCV000449264] Chr7:137589621..159119707 [GRCh37]
Chr7:7q33-36.3
pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:43360-159119707)x1 copy number loss See cases [RCV000446044] Chr7:43360..159119707 [GRCh37]
Chr7:7p22.3-q36.3
pathogenic
GRCh37/hg19 7q35-36.3(chr7:143839360-159138663) copy number loss Abnormal esophagus morphology [RCV000416719] Chr7:143839360..159138663 [GRCh37]
Chr7:7q35-36.3
pathogenic
GRCh37/hg19 7q33-36.3(chr7:133799185-159119707)x1 copy number loss See cases [RCV000448836] Chr7:133799185..159119707 [GRCh37]
Chr7:7q33-36.3
pathogenic
GRCh37/hg19 7q22.1-36.3(chr7:98969247-159119707)x3 copy number gain See cases [RCV000447709] Chr7:98969247..159119707 [GRCh37]
Chr7:7q22.1-36.3
pathogenic
GRCh37/hg19 7q36.1-36.3(chr7:149261179-159075020)x3 copy number gain See cases [RCV000447776] Chr7:149261179..159075020 [GRCh37]
Chr7:7q36.1-36.3
pathogenic
GRCh37/hg19 7q32.1-36.3(chr7:128276078-159119707)x3 copy number gain See cases [RCV000447956] Chr7:128276078..159119707 [GRCh37]
Chr7:7q32.1-36.3
pathogenic
GRCh37/hg19 7q34-36.3(chr7:140636858-159119707)x1 copy number loss See cases [RCV000510250] Chr7:140636858..159119707 [GRCh37]
Chr7:7q34-36.3
pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:43361-159119707) copy number gain See cases [RCV000510686] Chr7:43361..159119707 [GRCh37]
Chr7:7p22.3-q36.3
pathogenic
GRCh37/hg19 7q33-36.3(chr7:136758593-159119707)x3 copy number gain See cases [RCV000510490] Chr7:136758593..159119707 [GRCh37]
Chr7:7q33-36.3
pathogenic
GRCh37/hg19 7q33-36.3(chr7:137917376-159119707)x1 copy number loss See cases [RCV000511889] Chr7:137917376..159119707 [GRCh37]
Chr7:7q33-36.3
pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:43361-159119707)x3 copy number gain See cases [RCV000511549] Chr7:43361..159119707 [GRCh37]
Chr7:7p22.3-q36.3
pathogenic
GRCh37/hg19 7q36.1-36.3(chr7:150553743-159119707)x3 copy number gain See cases [RCV000510762] Chr7:150553743..159119707 [GRCh37]
Chr7:7q36.1-36.3
likely pathogenic
NC_000007.13:g.(?_150642433)_(151573725_?)del deletion Long QT syndrome [RCV000631876] Chr7:150642433..151573725 [GRCh37]
Chr7:7q36.1
pathogenic
GRCh37/hg19 7q22.1-36.3(chr7:98693388-159119707)x3 copy number gain not provided [RCV000682911] Chr7:98693388..159119707 [GRCh37]
Chr7:7q22.1-36.3
pathogenic
GRCh37/hg19 7q34-36.3(chr7:140133025-158982771)x1 copy number loss not provided [RCV000682910] Chr7:140133025..158982771 [GRCh37]
Chr7:7q34-36.3
pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:44935-159126310)x3 copy number gain not provided [RCV000746280] Chr7:44935..159126310 [GRCh37]
Chr7:7p22.3-q36.3
pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:10704-159122532)x3 copy number gain not provided [RCV000746278] Chr7:10704..159122532 [GRCh37]
Chr7:7p22.3-q36.3
pathogenic
GRCh37/hg19 7q34-36.3(chr7:139623170-158329903)x3 copy number gain not provided [RCV000747070] Chr7:139623170..158329903 [GRCh37]
Chr7:7q34-36.3
pathogenic
GRCh37/hg19 7q34-36.3(chr7:141938235-159126310)x1 copy number loss not provided [RCV000747083] Chr7:141938235..159126310 [GRCh37]
Chr7:7q34-36.3
pathogenic
GRCh37/hg19 7q35-36.1(chr7:143711059-152573935)x3 copy number gain not provided [RCV000747094] Chr7:143711059..152573935 [GRCh37]
Chr7:7q35-36.1
benign
GRCh37/hg19 7q36.1-36.3(chr7:148238976-159126310)x1 copy number loss not provided [RCV000747115] Chr7:148238976..159126310 [GRCh37]
Chr7:7q36.1-36.3
pathogenic
NC_000007.13:g.(?_150642443)_(151385353_?)dup duplication Long QT syndrome [RCV001031214] Chr7:150642443..151385353 [GRCh37]
Chr7:7q36.1
uncertain significance
GRCh37/hg19 7p22.3-q36.3(chr7:10365-159119707)x3 copy number gain not provided [RCV000848126] Chr7:10365..159119707 [GRCh37]
Chr7:7p22.3-q36.3
pathogenic
GRCh37/hg19 7q32.1-36.3(chr7:128312450-159119220) copy number gain not provided [RCV000767558] Chr7:128312450..159119220 [GRCh37]
Chr7:7q32.1-36.3
pathogenic
GRCh37/hg19 7q36.1(chr7:149968222-152539376)x3 copy number gain not provided [RCV000847582] Chr7:149968222..152539376 [GRCh37]
Chr7:7q36.1
uncertain significance
GRCh37/hg19 7q32.3-36.3(chr7:131414604-159126310)x1 copy number loss See cases [RCV001007432] Chr7:131414604..159126310 [GRCh37]
Chr7:7q32.3-36.3
pathogenic
GRCh37/hg19 7q32.3-36.3(chr7:130592554-159119707)x3 copy number gain not provided [RCV000849569] Chr7:130592554..159119707 [GRCh37]
Chr7:7q32.3-36.3
pathogenic
GRCh37/hg19 7q31.1-36.3(chr7:109251060-159119707)x3 copy number gain not provided [RCV001005994] Chr7:109251060..159119707 [GRCh37]
Chr7:7q31.1-36.3
pathogenic
NM_001243351.2(NUB1):c.12G>T (p.Lys4Asn) single nucleotide variant not provided [RCV000954268] Chr7:151345361 [GRCh38]
Chr7:151042447 [GRCh37]
Chr7:7q36.1
benign
GRCh38/hg38 7q34-36.3(chr7:138620939-159233475)x3 copy number gain Neurodevelopmental disorder [RCV003327610] Chr7:138620939..159233475 [GRCh38]
Chr7:7q34-36.3
likely pathogenic
GRCh38/hg38 7q33-36.3(chr7:137463392-159345973)x3 copy number gain Neurodevelopmental disorder [RCV003327609] Chr7:137463392..159345973 [GRCh38]
Chr7:7q33-36.3
pathogenic
GRCh37/hg19 7q35-36.3(chr7:143107740-156886246)x3 copy number gain not provided [RCV001249383] Chr7:143107740..156886246 [GRCh37]
Chr7:7q35-36.3
not provided
GRCh37/hg19 7q35-36.3(chr7:145962558-159119707)x1 copy number loss not provided [RCV001006022] Chr7:145962558..159119707 [GRCh37]
Chr7:7q35-36.3
pathogenic
NC_000007.13:g.(?_150642453)_(152373165_?)dup duplication Long QT syndrome [RCV001327691] Chr7:150642453..152373165 [GRCh37]
Chr7:7q36.1
uncertain significance
NC_000007.13:g.(?_150642443)_(151385353_?)del deletion Long QT syndrome [RCV001380536] Chr7:150642443..151385353 [GRCh37]
Chr7:7q36.1
pathogenic
GRCh37/hg19 7q36.1(chr7:150745923-152373214)x1 copy number loss Kleefstra syndrome 2 [RCV001801228] Chr7:150745923..152373214 [GRCh37]
Chr7:7q36.1
pathogenic
GRCh37/hg19 7q36.1-36.3(chr7:148153261-157543640)x3 copy number gain not provided [RCV001827941] Chr7:148153261..157543640 [GRCh37]
Chr7:7q36.1-36.3
pathogenic
GRCh37/hg19 7q33-36.3(chr7:133851002-159119707)x3 copy number gain not provided [RCV001834520] Chr7:133851002..159119707 [GRCh37]
Chr7:7q33-36.3
pathogenic
GRCh37/hg19 7q36.1-36.3(chr7:148695373-159119707)x1 copy number loss not provided [RCV001832910] Chr7:148695373..159119707 [GRCh37]
Chr7:7q36.1-36.3
pathogenic
NC_000007.13:g.(?_150642453)_(151573705_?)dup duplication Lethal congenital glycogen storage disease of heart [RCV001978713] Chr7:150642453..151573705 [GRCh37]
Chr7:7q36.1
uncertain significance
Single allele complex Ring chromosome 7 [RCV002280646] Chr7:43360..159119707 [GRCh37]
Chr7:7p22.3-q36.3
pathogenic
NC_000007.13:g.(?_150307047)_(152613597_?)del deletion not provided [RCV003113787] Chr7:150307047..152613597 [GRCh37]
Chr7:7q36.1-36.2
pathogenic
NC_000007.13:g.(?_150324807)_(152373164_?)del deletion not provided [RCV003113606] Chr7:150324807..152373164 [GRCh37]
Chr7:7q36.1
pathogenic
NC_000007.13:g.(?_150324807)_(152373164_?)dup duplication not provided [RCV003113607] Chr7:150324807..152373164 [GRCh37]
Chr7:7q36.1
uncertain significance
NC_000007.13:g.(?_150642453)_(151573705_?)del deletion Lethal congenital glycogen storage disease of heart [RCV003119718] Chr7:150642453..151573705 [GRCh37]
Chr7:7q36.1
uncertain significance
GRCh37/hg19 7q35-36.3(chr7:146927174-159128556)x3 copy number gain not provided [RCV002279740] Chr7:146927174..159128556 [GRCh37]
Chr7:7q35-36.3
pathogenic
GRCh37/hg19 7q36.1-36.3(chr7:149062717-159124131)x1 copy number loss not provided [RCV002279756] Chr7:149062717..159124131 [GRCh37]
Chr7:7q36.1-36.3
pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:56604613-96692931)x1 copy number loss See cases [RCV002287832] Chr7:56604613..96692931 [GRCh37]
Chr7:7p22.3-q36.3
uncertain significance
GRCh37/hg19 7q36.1(chr7:149332630-151498689)x1 copy number loss not provided [RCV002472413] Chr7:149332630..151498689 [GRCh37]
Chr7:7q36.1
pathogenic
NM_001243351.2(NUB1):c.1555G>T (p.Val519Phe) single nucleotide variant not specified [RCV004124507] Chr7:151376697 [GRCh38]
Chr7:151073783 [GRCh37]
Chr7:7q36.1
uncertain significance
NM_001243351.2(NUB1):c.1568C>T (p.Ala523Val) single nucleotide variant not specified [RCV004228267] Chr7:151376710 [GRCh38]
Chr7:151073796 [GRCh37]
Chr7:7q36.1
uncertain significance
NM_001243351.2(NUB1):c.1654C>T (p.Pro552Ser) single nucleotide variant not specified [RCV004193948] Chr7:151376796 [GRCh38]
Chr7:151073882 [GRCh37]
Chr7:7q36.1
uncertain significance
GRCh37/hg19 7q34-36.1(chr7:140154317-152551638)x1 copy number loss not provided [RCV003334300] Chr7:140154317..152551638 [GRCh37]
Chr7:7q34-36.1
pathogenic
NM_001243351.2(NUB1):c.712G>A (p.Gly238Arg) single nucleotide variant not specified [RCV004365443] Chr7:151360159 [GRCh38]
Chr7:151057245 [GRCh37]
Chr7:7q36.1
uncertain significance
GRCh37/hg19 7q35-36.3(chr7:144940098-159119707)x1 copy number loss not provided [RCV003482991] Chr7:144940098..159119707 [GRCh37]
Chr7:7q35-36.3
pathogenic
GRCh37/hg19 7q33-36.3(chr7:135639005-159119707)x1 copy number loss not provided [RCV003482988] Chr7:135639005..159119707 [GRCh37]
Chr7:7q33-36.3
pathogenic
GRCh37/hg19 7q34-36.3(chr7:142099013-159119707)x1 copy number loss not provided [RCV003482989] Chr7:142099013..159119707 [GRCh37]
Chr7:7q34-36.3
pathogenic
NM_001243351.2(NUB1):c.598+6C>T single nucleotide variant not provided [RCV003435311] Chr7:151355956 [GRCh38]
Chr7:151053042 [GRCh37]
Chr7:7q36.1
likely benign
NM_001243351.2(NUB1):c.240G>A (p.Thr80=) single nucleotide variant not provided [RCV003423838] Chr7:151349195 [GRCh38]
Chr7:151046281 [GRCh37]
Chr7:7q36.1
likely benign
GRCh37/hg19 7q33-36.3(chr7:137456457-159119707)x3 copy number gain not specified [RCV003986713] Chr7:137456457..159119707 [GRCh37]
Chr7:7q33-36.3
pathogenic
GRCh37/hg19 7q34-36.3(chr7:141690279-159119707)x3 copy number gain See cases [RCV004442845] Chr7:141690279..159119707 [GRCh37]
Chr7:7q34-36.3
pathogenic
NM_001243351.2(NUB1):c.422C>T (p.Thr141Ile) single nucleotide variant not specified [RCV004496087] Chr7:151355774 [GRCh38]
Chr7:151052860 [GRCh37]
Chr7:7q36.1
uncertain significance
NM_001243351.2(NUB1):c.1495G>A (p.Val499Met) single nucleotide variant not specified [RCV004496085] Chr7:151376637 [GRCh38]
Chr7:151073723 [GRCh37]
Chr7:7q36.1
uncertain significance
NM_001243351.2(NUB1):c.200C>A (p.Ala67Glu) single nucleotide variant not specified [RCV004496086] Chr7:151349155 [GRCh38]
Chr7:151046241 [GRCh37]
Chr7:7q36.1
uncertain significance
NC_000007.13:g.(?_150643945)_(151573705_?)del deletion Long QT syndrome [RCV004583458] Chr7:150643945..151573705 [GRCh37]
Chr7:7q36.1
pathogenic
NM_001243351.2(NUB1):c.509A>G (p.Gln170Arg) single nucleotide variant not specified [RCV004638814] Chr7:151355861 [GRCh38]
Chr7:151052947 [GRCh37]
Chr7:7q36.1
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:5415
Count of miRNA genes:1067
Interacting mature miRNAs:1288
Transcripts:ENST00000355851, ENST00000413040, ENST00000460712, ENST00000468404, ENST00000470229, ENST00000470316, ENST00000477666, ENST00000480714, ENST00000480907, ENST00000483358, ENST00000493588, ENST00000497987, ENST00000566856, ENST00000568733
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1559221SCL67_HSerum cholesterol level QTL 67 (human)2.980.002Lipid leveltriglyceride7141776251159345973Human
1578618SCL127_HSerum cholesterol level QTL 127 (human)3.7Lipid leveltriglyceride7141776251159345973Human
597236218GWAS1332292_Hblood protein measurement QTL GWAS1332292 (human)7e-94blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)7151343308151343309Human
597359449GWAS1455523_Hcarotid plaque build QTL GWAS1455523 (human)0.000005carotid plaque build7151377657151377658Human
597234653GWAS1330727_Hblood protein measurement QTL GWAS1330727 (human)4e-69blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)7151343308151343309Human
1559218SCL69_HSerum cholesterol level QTL 69 (human)3.410.002Lipid leveltriglyceride7141776251159345973Human
597350972GWAS1447046_Hbody height QTL GWAS1447046 (human)5e-34body height (VT:0001253)body height (CMO:0000106)7151346614151346615Human
1559263SCL72_HSerum cholesterol level QTL 72 (human)3.25Lipid leveltriglyceride7141776251159345973Human
597052702GWAS1148776_Hfatty acid measurement QTL GWAS1148776 (human)0.0000004fatty acid measurement7151345197151345198Human
597410034GWAS1506108_Hfatty acid measurement QTL GWAS1506108 (human)0.0000002fatty acid measurement7151360599151360600Human
1578610SCL128_HSerum cholesterol level QTL 128 (human)2.2Lipid levelLDL cholesterol7141776251159345973Human
597052700GWAS1148774_Hfatty acid measurement QTL GWAS1148774 (human)0.0000002fatty acid measurement7151357494151357495Human
597052701GWAS1148775_Hfatty acid measurement QTL GWAS1148775 (human)0.0000002fatty acid measurement7151353528151353529Human
597036345GWAS1132419_Hbody height QTL GWAS1132419 (human)2e-13body height (VT:0001253)body height (CMO:0000106)7151358472151358473Human
1559237SCL70_HSerum cholesterol level QTL 70 (human)3.520.002Lipid leveltriglyceride7141776251159345973Human
597481129GWAS1577203_Hmonocyte count QTL GWAS1577203 (human)4e-11monocyte quantity (VT:0000223)blood monocyte count (CMO:0000032)7151360310151360311Human
1559232SCL66_HSerum cholesterol level QTL 66 (human)2.980.002Lipid leveltriglyceride7141776251159345973Human
1559264SCL68_HSerum cholesterol level QTL 68 (human)3.10.002Lipid leveltriglyceride7141776251159345973Human
1559213SCL71_HSerum cholesterol level QTL 71 (human)3.46Lipid leveltriglyceride7141776251159345973Human
596977929GWAS1097448_Hbody height QTL GWAS1097448 (human)3e-12body height (VT:0001253)body height (CMO:0000106)7151346614151346615Human
597232583GWAS1328657_Hblood protein measurement QTL GWAS1328657 (human)1e-77blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)7151343308151343309Human
597307237GWAS1403311_Hbody height QTL GWAS1403311 (human)3e-12body height (VT:0001253)body height (CMO:0000106)7151346614151346615Human

Markers in Region
GDB:4585237  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377151,070,028 - 151,070,136UniSTSGRCh37
Build 367150,700,961 - 150,701,069RGDNCBI36
Celera7145,627,274 - 145,627,382RGD
Cytogenetic Map7q36UniSTS
HuRef7144,881,551 - 144,881,659UniSTS
CRA_TCAGchr7v27150,399,392 - 150,399,500UniSTS
SGC34468  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377151,075,146 - 151,075,295UniSTSGRCh37
Build 367150,706,079 - 150,706,228RGDNCBI36
Celera7145,632,392 - 145,632,541RGD
Cytogenetic Map7q36UniSTS
Cytogenetic Map7q36.1UniSTS
HuRef7144,886,669 - 144,886,818UniSTS
CRA_TCAGchr7v27150,404,510 - 150,404,659UniSTS
GeneMap99-GB4 RH Map7675.52UniSTS
Whitehead-RH Map7646.6UniSTS
GDB:1317446  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377151,046,275 - 151,046,384UniSTSGRCh37
Build 367150,677,208 - 150,677,317RGDNCBI36
Celera7145,603,667 - 145,603,776RGD
Cytogenetic Map7q36UniSTS
HuRef7144,857,941 - 144,858,050UniSTS
CRA_TCAGchr7v27150,375,783 - 150,375,892UniSTS
RH17515  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377151,075,228 - 151,075,348UniSTSGRCh37
GRCh37837,256,207 - 37,256,327UniSTSGRCh37
Build 367150,706,161 - 150,706,281RGDNCBI36
Celera836,208,153 - 36,208,273UniSTS
Celera7145,632,474 - 145,632,594RGD
Cytogenetic Map7q36.1UniSTS
Cytogenetic Map7q36UniSTS
HuRef835,789,885 - 35,790,005UniSTS
HuRef7144,886,751 - 144,886,871UniSTS
CRA_TCAGchr7v27150,404,592 - 150,404,712UniSTS
SHGC-105229  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377151,063,917 - 151,064,206UniSTSGRCh37
Build 367150,694,850 - 150,695,139RGDNCBI36
Celera7145,621,163 - 145,621,452RGD
Cytogenetic Map7q36UniSTS
HuRef7144,875,439 - 144,875,728UniSTS
CRA_TCAGchr7v27150,393,281 - 150,393,570UniSTS
TNG Radiation Hybrid Map767605.0UniSTS
RH41874  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377151,075,379 - 151,075,479UniSTSGRCh37
Build 367150,706,312 - 150,706,412RGDNCBI36
Celera7145,632,625 - 145,632,725RGD
Cytogenetic Map7q36UniSTS
Cytogenetic Map7q36.1UniSTS
HuRef7144,886,902 - 144,887,002UniSTS
CRA_TCAGchr7v27150,404,743 - 150,404,843UniSTS
GeneMap99-GB4 RH Map7676.64UniSTS
GDB:4585447  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377151,075,553 - 151,075,662UniSTSGRCh37
Build 367150,706,486 - 150,706,595RGDNCBI36
Celera7145,632,799 - 145,632,908RGD
Cytogenetic Map7q36.1UniSTS
Cytogenetic Map7q36UniSTS
HuRef7144,887,076 - 144,887,185UniSTS
CRA_TCAGchr7v27150,404,917 - 150,405,026UniSTS
RH48879  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377151,065,857 - 151,065,977UniSTSGRCh37
Build 367150,696,790 - 150,696,910RGDNCBI36
Celera7145,623,103 - 145,623,223RGD
Cytogenetic Map7q36UniSTS
HuRef7144,877,379 - 144,877,499UniSTS
CRA_TCAGchr7v27150,395,221 - 150,395,341UniSTS
GeneMap99-GB4 RH Map7675.32UniSTS
STS-T55335  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377151,068,361 - 151,068,513UniSTSGRCh37
Build 367150,699,294 - 150,699,446RGDNCBI36
Celera7145,625,607 - 145,625,759RGD
Cytogenetic Map7q36UniSTS
HuRef7144,879,883 - 144,880,036UniSTS
CRA_TCAGchr7v27150,397,725 - 150,397,877UniSTS
GeneMap99-GB4 RH Map7676.54UniSTS
NCBI RH Map71499.7UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2253 4974 1726 2351 6 624 1951 465 2270 7306 6472 53 3734 1 852 1744 1617 175 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_029746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001243351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001363529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001385353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001385354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001385355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001385356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001385361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_016118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017012304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017012308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024446798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024446799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054358390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054358391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054358392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AACC02000108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC005486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF108083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF155099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF300717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF459743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK026433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK293159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW205479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AX405755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY129295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC046354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG105733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN258712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB048887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF458635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF458638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000413040   ⟹   ENSP00000398644
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7151,341,772 - 151,378,449 (+)Ensembl
Ensembl Acc Id: ENST00000460712   ⟹   ENSP00000420344
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7151,368,733 - 151,377,281 (+)Ensembl
Ensembl Acc Id: ENST00000468404   ⟹   ENSP00000420638
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7151,341,804 - 151,361,249 (+)Ensembl
Ensembl Acc Id: ENST00000470229   ⟹   ENSP00000418234
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7151,341,812 - 151,378,431 (+)Ensembl
Ensembl Acc Id: ENST00000470316   ⟹   ENSP00000420023
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7151,345,345 - 151,361,237 (+)Ensembl
Ensembl Acc Id: ENST00000477666
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7151,352,252 - 151,360,244 (+)Ensembl
Ensembl Acc Id: ENST00000480714   ⟹   ENSP00000419679
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7151,368,830 - 151,374,624 (+)Ensembl
Ensembl Acc Id: ENST00000480907
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7151,351,328 - 151,368,805 (+)Ensembl
Ensembl Acc Id: ENST00000483358   ⟹   ENSP00000420086
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7151,345,345 - 151,360,209 (+)Ensembl
Ensembl Acc Id: ENST00000493588
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7151,351,120 - 151,360,295 (+)Ensembl
Ensembl Acc Id: ENST00000497987
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7151,360,141 - 151,369,193 (+)Ensembl
Ensembl Acc Id: ENST00000568733   ⟹   ENSP00000454264
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7151,341,812 - 151,378,449 (+)Ensembl
RefSeq Acc Id: NM_001243351   ⟹   NP_001230280
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387151,341,812 - 151,378,449 (+)NCBI
GRCh377151,038,785 - 151,075,547 (+)NCBI
HuRef7144,850,514 - 144,887,070 (+)NCBI
CHM1_17151,047,250 - 151,083,821 (+)NCBI
T2T-CHM13v2.07152,514,799 - 152,551,295 (+)NCBI
CRA_TCAGchr7v27150,368,354 - 150,404,911 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001363529   ⟹   NP_001350458
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387151,341,812 - 151,378,449 (+)NCBI
T2T-CHM13v2.07152,514,799 - 152,551,295 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001385353   ⟹   NP_001372282
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387151,341,812 - 151,378,449 (+)NCBI
T2T-CHM13v2.07152,514,799 - 152,551,295 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001385354   ⟹   NP_001372283
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387151,341,812 - 151,378,449 (+)NCBI
T2T-CHM13v2.07152,514,799 - 152,551,295 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001385355   ⟹   NP_001372284
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387151,341,812 - 151,378,449 (+)NCBI
T2T-CHM13v2.07152,514,799 - 152,551,295 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001385356   ⟹   NP_001372285
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387151,341,812 - 151,378,449 (+)NCBI
T2T-CHM13v2.07152,514,799 - 152,551,295 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001385361   ⟹   NP_001372290
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387151,341,812 - 151,378,449 (+)NCBI
T2T-CHM13v2.07152,514,799 - 152,551,295 (+)NCBI
Sequence:
RefSeq Acc Id: NM_016118   ⟹   NP_057202
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387151,341,812 - 151,378,449 (+)NCBI
GRCh377151,038,785 - 151,075,547 (+)NCBI
Build 367150,669,791 - 150,706,468 (+)NCBI Archive
HuRef7144,850,514 - 144,887,070 (+)NCBI
CHM1_17151,047,250 - 151,083,821 (+)NCBI
T2T-CHM13v2.07152,514,799 - 152,551,295 (+)NCBI
CRA_TCAGchr7v27150,368,354 - 150,404,911 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017012304   ⟹   XP_016867793
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387151,341,812 - 151,378,449 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017012308   ⟹   XP_016867797
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387151,341,812 - 151,378,449 (+)NCBI
Sequence:
RefSeq Acc Id: XM_024446798   ⟹   XP_024302566
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387151,351,967 - 151,378,449 (+)NCBI
Sequence:
RefSeq Acc Id: XM_054358390   ⟹   XP_054214365
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.07152,514,799 - 152,551,295 (+)NCBI
RefSeq Acc Id: XM_054358391   ⟹   XP_054214366
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.07152,514,799 - 152,551,295 (+)NCBI
RefSeq Acc Id: XM_054358392   ⟹   XP_054214367
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.07152,524,557 - 152,551,295 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001230280 (Get FASTA)   NCBI Sequence Viewer  
  NP_001350458 (Get FASTA)   NCBI Sequence Viewer  
  NP_001372282 (Get FASTA)   NCBI Sequence Viewer  
  NP_001372283 (Get FASTA)   NCBI Sequence Viewer  
  NP_001372284 (Get FASTA)   NCBI Sequence Viewer  
  NP_001372285 (Get FASTA)   NCBI Sequence Viewer  
  NP_001372290 (Get FASTA)   NCBI Sequence Viewer  
  NP_057202 (Get FASTA)   NCBI Sequence Viewer  
  XP_016867793 (Get FASTA)   NCBI Sequence Viewer  
  XP_016867797 (Get FASTA)   NCBI Sequence Viewer  
  XP_024302566 (Get FASTA)   NCBI Sequence Viewer  
  XP_054214365 (Get FASTA)   NCBI Sequence Viewer  
  XP_054214366 (Get FASTA)   NCBI Sequence Viewer  
  XP_054214367 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC82474 (Get FASTA)   NCBI Sequence Viewer  
  AAD42865 (Get FASTA)   NCBI Sequence Viewer  
  AAH46354 (Get FASTA)   NCBI Sequence Viewer  
  AAK21001 (Get FASTA)   NCBI Sequence Viewer  
  AAN01355 (Get FASTA)   NCBI Sequence Viewer  
  AAO14547 (Get FASTA)   NCBI Sequence Viewer  
  AAS02030 (Get FASTA)   NCBI Sequence Viewer  
  BAH11464 (Get FASTA)   NCBI Sequence Viewer  
  CAD34862 (Get FASTA)   NCBI Sequence Viewer  
  EAL24511 (Get FASTA)   NCBI Sequence Viewer  
  EAW54000 (Get FASTA)   NCBI Sequence Viewer  
  EAW54001 (Get FASTA)   NCBI Sequence Viewer  
  EAW54002 (Get FASTA)   NCBI Sequence Viewer  
  EAW54003 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000398644
  ENSP00000398644.3
  ENSP00000418234
  ENSP00000418234.2
  ENSP00000419679.1
  ENSP00000420023.1
  ENSP00000420086.1
  ENSP00000420344.1
  ENSP00000420638.1
  ENSP00000454264
  ENSP00000454264.2
GenBank Protein Q9Y5A7 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_057202   ⟸   NM_016118
- Peptide Label: isoform 2
- UniProtKB: A0A090N8Q5 (UniProtKB/TrEMBL),   H3BM14 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001230280   ⟸   NM_001243351
- Peptide Label: isoform 1
- UniProtKB: Q9Y5A7 (UniProtKB/Swiss-Prot),   Q8IX22 (UniProtKB/Swiss-Prot),   Q75MR9 (UniProtKB/Swiss-Prot),   O95422 (UniProtKB/Swiss-Prot),   Q9BXR2 (UniProtKB/Swiss-Prot),   H3BM74 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016867793   ⟸   XM_017012304
- Peptide Label: isoform X1
- UniProtKB: H3BM74 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016867797   ⟸   XM_017012308
- Peptide Label: isoform X2
- UniProtKB: H3BM14 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_024302566   ⟸   XM_024446798
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: NP_001350458   ⟸   NM_001363529
- Peptide Label: isoform 1
- UniProtKB: Q9Y5A7 (UniProtKB/Swiss-Prot),   Q8IX22 (UniProtKB/Swiss-Prot),   Q75MR9 (UniProtKB/Swiss-Prot),   O95422 (UniProtKB/Swiss-Prot),   Q9BXR2 (UniProtKB/Swiss-Prot),   H3BM74 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSP00000398644   ⟸   ENST00000413040
Ensembl Acc Id: ENSP00000420638   ⟸   ENST00000468404
Ensembl Acc Id: ENSP00000419679   ⟸   ENST00000480714
Ensembl Acc Id: ENSP00000420086   ⟸   ENST00000483358
Ensembl Acc Id: ENSP00000418234   ⟸   ENST00000470229
Ensembl Acc Id: ENSP00000420023   ⟸   ENST00000470316
Ensembl Acc Id: ENSP00000420344   ⟸   ENST00000460712
Ensembl Acc Id: ENSP00000454264   ⟸   ENST00000568733
RefSeq Acc Id: NP_001372282   ⟸   NM_001385353
- Peptide Label: isoform 2
- UniProtKB: A0A090N8Q5 (UniProtKB/TrEMBL),   H3BM14 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001372285   ⟸   NM_001385356
- Peptide Label: isoform 5
- UniProtKB: H3BM14 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001372284   ⟸   NM_001385355
- Peptide Label: isoform 4
- UniProtKB: H3BM14 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001372290   ⟸   NM_001385361
- Peptide Label: isoform 5
- UniProtKB: H3BM14 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001372283   ⟸   NM_001385354
- Peptide Label: isoform 4
- UniProtKB: H3BM14 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054214365   ⟸   XM_054358390
- Peptide Label: isoform X1
- UniProtKB: H3BM74 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054214366   ⟸   XM_054358391
- Peptide Label: isoform X2
- UniProtKB: H3BM14 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054214367   ⟸   XM_054358392
- Peptide Label: isoform X3
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9Y5A7-F1-model_v2 AlphaFold Q9Y5A7 1-615 view protein structure

Promoters
RGD ID:6805964
Promoter ID:HG_KWN:60297
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_016118,   UC003WJV.1,   UC003WJX.1
Position:
Human AssemblyChrPosition (strand)Source
Build 367150,669,521 - 150,670,272 (+)MPROMDB
RGD ID:6813250
Promoter ID:HG_ACW:75095
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562
Transcripts:NUB1.DAPR07
Position:
Human AssemblyChrPosition (strand)Source
Build 367150,679,756 - 150,680,256 (+)MPROMDB
RGD ID:7212379
Promoter ID:EPDNEW_H11936
Type:initiation region
Name:NUB1_1
Description:negative regulator of ubiquitin like proteins 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh387151,341,732 - 151,341,792EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:17623 AgrOrtholog
COSMIC NUB1 COSMIC
Ensembl Genes ENSG00000013374 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000413040 ENTREZGENE, UniProtKB/TrEMBL
  ENST00000413040.7 UniProtKB/Swiss-Prot
  ENST00000460712.1 UniProtKB/TrEMBL
  ENST00000468404.5 UniProtKB/TrEMBL
  ENST00000470229 ENTREZGENE
  ENST00000470229.6 UniProtKB/Swiss-Prot
  ENST00000470316.5 UniProtKB/TrEMBL
  ENST00000480714.1 UniProtKB/TrEMBL
  ENST00000483358.5 UniProtKB/TrEMBL
  ENST00000568733 ENTREZGENE, UniProtKB/TrEMBL
  ENST00000568733.6 UniProtKB/Swiss-Prot
Gene3D-CATH DNA helicase RuvA subunit, C-terminal domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000013374 GTEx
HGNC ID HGNC:17623 ENTREZGENE
Human Proteome Map NUB1 Human Proteome Map
InterPro NUB1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUB1_ubiquitin-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBA-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:51667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 51667 ENTREZGENE
OMIM 607981 OMIM
PANTHER NEDD8 ULTIMATE BUSTER 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12948 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam UBA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ubiquitin_5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA147357533 PharmGKB
PROSITE UBA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART UBA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46934 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48452 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54236 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A090N8Q5 ENTREZGENE, UniProtKB/TrEMBL
  C9JRT6_HUMAN UniProtKB/TrEMBL
  F8WDB6_HUMAN UniProtKB/TrEMBL
  F8WDL9_HUMAN UniProtKB/TrEMBL
  H3BM14 ENTREZGENE, UniProtKB/TrEMBL
  H3BM74 ENTREZGENE, UniProtKB/TrEMBL
  H7C5E1_HUMAN UniProtKB/TrEMBL
  H7C5N1_HUMAN UniProtKB/TrEMBL
  NUB1_HUMAN UniProtKB/Swiss-Prot
  O95422 ENTREZGENE
  Q75MR9 ENTREZGENE
  Q8IX22 ENTREZGENE
  Q9BXR2 ENTREZGENE
  Q9Y5A7 ENTREZGENE
UniProt Secondary O95422 UniProtKB/Swiss-Prot
  Q75MR9 UniProtKB/Swiss-Prot
  Q8IX22 UniProtKB/Swiss-Prot
  Q9BXR2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-06-14 NUB1  negative regulator of ubiquitin like proteins 1  NUB1  negative regulator of ubiquitin-like proteins 1  Symbol and/or name change 5135510 APPROVED