MIR656 (microRNA 656) - Rat Genome Database

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Gene: MIR656 (microRNA 656) Homo sapiens
Analyze
Symbol: MIR656
Name: microRNA 656
RGD ID: 1601673
HGNC Page HGNC:32912
Description: Predicted to be involved in miRNA-mediated post-transcriptional gene silencing. Predicted to be part of RISC complex.
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: hsa-mir-656; mir-656; MIRN656
RGD Orthologs
Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814101,066,724 - 101,066,801 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14101,066,724 - 101,066,801 (+)EnsemblGRCh38hg38GRCh38
GRCh3714101,533,061 - 101,533,138 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3614100,602,813 - 100,602,890 (+)NCBINCBI36Build 36hg18NCBI36
Celera1481,589,123 - 81,589,200 (+)NCBICelera
Cytogenetic Map14q32.31NCBI
HuRef1481,716,435 - 81,716,512 (+)NCBIHuRef
CHM1_114101,472,083 - 101,472,160 (+)NCBICHM1_1
T2T-CHM13v2.01495,302,111 - 95,302,188 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MIR656HumanKagami-Ogata syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Paternal uniparental disomy 14ClinVarPMID:18176563
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MIR656Humanpapillary thyroid carcinoma  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:28030816

1 to 9 of 9 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MIR656Human17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of MIR656 mRNACTDPMID:22113133
MIR656Human2-hydroxypropanoic acid increases expressionEXP 6480464Lactic Acid results in increased expression of MIR656 mRNACTDPMID:30851411
MIR656Humanbenzo[a]pyrene increases methylationEXP 6480464Benzo(a)pyrene results in increased methylation of MIR656 promoterCTDPMID:27901495
MIR656Humanbisphenol A increases methylationISOMir3581 (Rattus norvegicus)6480464bisphenol A results in increased methylation of MIR3581 geneCTDPMID:28505145
MIR656Humancadmium dichloride increases expressionISOMir3581 (Rattus norvegicus)6480464Cadmium Chloride results in increased expression of MIR3581 mRNACTDPMID:35525383
MIR656Humanethanol decreases expressionEXP 6480464Ethanol results in decreased expression of MIR656CTDPMID:21878650
MIR656Humanhydrogen peroxide increases expressionEXP 6480464Hydrogen Peroxide results in increased expression of MIR656 mRNACTDPMID:26339600
MIR656Humanrac-lactic acid increases expressionEXP 6480464Lactic Acid results in increased expression of MIR656 mRNACTDPMID:30851411
MIR656Humansodium arsenite decreases expressionEXP 6480464sodium arsenite results in decreased expression of MIR656 mRNACTDPMID:29207610

1 to 9 of 9 rows

Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MIR656HumanmiRNA-mediated post-transcriptional gene silencing involved_inIEARfam:RF00641150520179 RNAcentralGO_REF:0000115

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MIR656HumanRISC complex part_ofIEARfam:RF00641150520179 RNAcentralGO_REF:0000115


#
Reference Title
Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:16381832   PMID:16505370   PMID:21037258   PMID:22219177   PMID:23034410   PMID:24480809   PMID:29769662   PMID:29931616   PMID:32607966   PMID:33831787   PMID:35081855   PMID:35156513  
PMID:35239093   PMID:36164726   PMID:37807311   PMID:38400534  



MIR656
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814101,066,724 - 101,066,801 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14101,066,724 - 101,066,801 (+)EnsemblGRCh38hg38GRCh38
GRCh3714101,533,061 - 101,533,138 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3614100,602,813 - 100,602,890 (+)NCBINCBI36Build 36hg18NCBI36
Celera1481,589,123 - 81,589,200 (+)NCBICelera
Cytogenetic Map14q32.31NCBI
HuRef1481,716,435 - 81,716,512 (+)NCBIHuRef
CHM1_114101,472,083 - 101,472,160 (+)NCBICHM1_1
T2T-CHM13v2.01495,302,111 - 95,302,188 (+)NCBIT2T-CHM13v2.0
Mir3581
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86134,579,184 - 134,579,263 (-)NCBIGRCr8
mRatBN7.26128,757,779 - 128,757,858 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6128,757,779 - 128,757,858 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6128,937,018 - 128,937,097 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06129,232,850 - 129,232,929 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06128,594,475 - 128,594,554 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06133,893,418 - 133,893,497 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6133,893,418 - 133,893,497 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06143,055,775 - 143,055,854 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera6126,342,158 - 126,342,237 (-)NCBICelera
Cytogenetic Map6q32NCBI

.

1 to 10 of 21 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 14q32.2-32.33(chr14:99831655-106855263)x1 copy number loss See cases [RCV000133831] Chr14:99831655..106855263 [GRCh38]
Chr14:100297992..107263478 [GRCh37]
Chr14:99367745..106334523 [NCBI36]
Chr14:14q32.2-32.33		 pathogenic
GRCh38/hg38 14q24.3-32.33(chr14:73655772-106879298)x3 copy number gain See cases [RCV000134000] Chr14:73655772..106879298 [GRCh38]
Chr14:74122475..107287505 [GRCh37]
Chr14:73192228..106358550 [NCBI36]
Chr14:14q24.3-32.33		 pathogenic
GRCh38/hg38 14q32.2-32.33(chr14:97638520-106855263)x3 copy number gain See cases [RCV000135400] Chr14:97638520..106855263 [GRCh38]
Chr14:98104857..107263478 [GRCh37]
Chr14:97174610..106334523 [NCBI36]
Chr14:14q32.2-32.33		 pathogenic
GRCh38/hg38 14q32.2-32.33(chr14:100309382-105987610)x3 copy number gain See cases [RCV000135410] Chr14:100309382..105987610 [GRCh38]
Chr14:100775719..106453697 [GRCh37]
Chr14:99845472..105524742 [NCBI36]
Chr14:14q32.2-32.33		 pathogenic
GRCh38/hg38 14q32.2-32.33(chr14:99448012-106850609)x3 copy number gain See cases [RCV000135875] Chr14:99448012..106850609 [GRCh38]
Chr14:99914349..107258824 [GRCh37]
Chr14:98984102..106329869 [NCBI36]
Chr14:14q32.2-32.33		 pathogenic
GRCh38/hg38 14q11.2-32.33(chr14:20151149-106855263)x3 copy number gain See cases [RCV000135543] Chr14:20151149..106855263 [GRCh38]
Chr14:20619308..107263478 [GRCh37]
Chr14:19689148..106334523 [NCBI36]
Chr14:14q11.2-32.33		 pathogenic
GRCh38/hg38 14q32.12-32.33(chr14:92540983-104863658)x3 copy number gain See cases [RCV000135896] Chr14:92540983..104863658 [GRCh38]
Chr14:93007328..105329995 [GRCh37]
Chr14:92077081..104401040 [NCBI36]
Chr14:14q32.12-32.33		 pathogenic
GRCh38/hg38 14q32.13-32.33(chr14:95524407-106879501)x1 copy number loss See cases [RCV000136032] Chr14:95524407..106879501 [GRCh38]
Chr14:95990744..107287708 [GRCh37]
Chr14:95060497..106358753 [NCBI36]
Chr14:14q32.13-32.33		 pathogenic
GRCh38/hg38 14q24.3-32.33(chr14:77222795-106879298)x3 copy number gain See cases [RCV000138230] Chr14:77222795..106879298 [GRCh38]
Chr14:77689138..107287505 [GRCh37]
Chr14:76758891..106358550 [NCBI36]
Chr14:14q24.3-32.33		 pathogenic
GRCh38/hg38 14q32.2-32.31(chr14:100262836-102500697)x1 copy number loss See cases [RCV000139723] Chr14:100262836..102500697 [GRCh38]
Chr14:100729173..102967034 [GRCh37]
Chr14:99798926..102036787 [NCBI36]
Chr14:14q32.2-32.31		 pathogenic
1 to 10 of 21 rows

Predicted Targets
Summary Value
Count of predictions:34145
Count of gene targets:14440
Count of transcripts:28858
Interacting mature miRNAs:hsa-miR-656-3p, hsa-miR-656-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
83 152 65 82 808 379 165 2 64 73 50 85 478 434 25 634 51 353 97 17



Ensembl Acc Id: ENST00000385224
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl14101,066,724 - 101,066,801 (+)Ensembl
RefSeq Acc Id: NR_030392
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3814101,066,724 - 101,066,801 (+)NCBI
GRCh3714101,533,061 - 101,533,138 (+)RGD
Celera1481,589,123 - 81,589,200 (+)RGD
HuRef1481,716,435 - 81,716,512 (+)ENTREZGENE
CHM1_114101,472,083 - 101,472,160 (+)NCBI
T2T-CHM13v2.01495,302,111 - 95,302,188 (+)NCBI
Sequence:


1 to 13 of 13 rows
Database
Acc Id
Source(s)
COSMIC MIR656 COSMIC
Ensembl Genes ENSG00000207959 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000385224 ENTREZGENE
GTEx ENSG00000207959 GTEx
HGNC ID HGNC:32912 ENTREZGENE
Human Proteome Map MIR656 Human Proteome Map
miRBase MI0003678 ENTREZGENE
NCBI Gene 724026 ENTREZGENE
OMIM 616376 OMIM
PharmGKB PA164722952 PharmGKB
RNAcentral URS0000202460 RNACentral
  URS000075B5E4 RNACentral
  URS000075DD8D RNACentral
1 to 13 of 13 rows