Catsperd (cation channel sperm associated auxiliary subunit delta) - Rat Genome Database

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Gene: Catsperd (cation channel sperm associated auxiliary subunit delta) Rattus norvegicus
Analyze
Symbol: Catsperd
Name: cation channel sperm associated auxiliary subunit delta
RGD ID: 1594167
Description: Predicted to be involved in flagellated sperm motility and sperm capacitation. Predicted to be part of CatSper complex. Predicted to be active in sperm principal piece. Orthologous to human CATSPERD (cation channel sperm associated auxiliary subunit delta); INTERACTS WITH bisphenol A; Cuprizon; endosulfan.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: cation channel sperm-associated auxiliary subunit delta; cation channel sperm-associated protein subunit delta; catsper channel auxiliary subunit delta; catSper-delta; catSperdelta; hypothetical protein LOC680264; LOC680264; MGC189565; Tmem146; transmembrane protein 146
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.291,459,967 - 1,498,342 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl91,460,001 - 1,498,344 (+)Ensembl
Rnor_6.0910,390,307 - 10,428,666 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl910,390,308 - 10,427,746 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.099,387,387 - 9,425,465 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera97,018,321 - 7,052,741 (-)NCBICelera
Cytogenetic Map9q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
flagellated sperm motility  (IBA,ISO,ISS)
sperm capacitation  (IBA,ISO,ISS)
spermatogenesis  (ISO,ISS)

Cellular Component
CatSper complex  (IBA,IEA,ISO,ISS)
sperm principal piece  (IBA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15632090   PMID:21224844  


Genomics

Comparative Map Data
Catsperd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.291,459,967 - 1,498,342 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl91,460,001 - 1,498,344 (+)Ensembl
Rnor_6.0910,390,307 - 10,428,666 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl910,390,308 - 10,427,746 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.099,387,387 - 9,425,465 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera97,018,321 - 7,052,741 (-)NCBICelera
Cytogenetic Map9q12NCBI
CATSPERD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38195,720,637 - 5,778,734 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl195,720,637 - 5,778,734 (+)EnsemblGRCh38hg38GRCh38
GRCh37195,720,648 - 5,778,745 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36195,671,688 - 5,729,742 (+)NCBINCBI36hg18NCBI36
Celera195,658,055 - 5,716,734 (+)NCBI
Cytogenetic Map19p13.3NCBI
HuRef195,481,184 - 5,539,676 (+)NCBIHuRef
CHM1_1195,720,301 - 5,778,354 (+)NCBICHM1_1
T2T-CHM13v2.0195,707,310 - 5,765,529 (+)NCBI
Catsperd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391756,933,917 - 56,971,456 (+)NCBIGRCm39mm39
GRCm39 Ensembl1756,935,143 - 56,971,456 (+)Ensembl
GRCm381756,626,911 - 56,664,456 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1756,628,143 - 56,664,456 (+)EnsemblGRCm38mm10GRCm38
MGSCv371756,767,566 - 56,803,879 (+)NCBIGRCm37mm9NCBIm37
MGSCv361756,335,998 - 56,349,578 (+)NCBImm8
Celera1760,972,342 - 61,008,586 (+)NCBICelera
Cytogenetic Map17DNCBI
Catsperd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554953,663,878 - 3,711,595 (-)NCBIChiLan1.0ChiLan1.0
CATSPERD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1195,671,346 - 5,722,150 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl195,671,403 - 5,722,095 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0194,736,106 - 4,792,440 (+)NCBIMhudiblu_PPA_v0panPan3
CATSPERD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12054,260,014 - 54,312,504 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2054,260,046 - 54,312,277 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2053,987,455 - 54,039,467 (-)NCBI
ROS_Cfam_1.02054,912,668 - 54,951,312 (-)NCBI
UMICH_Zoey_3.12053,978,667 - 54,030,999 (-)NCBI
UNSW_CanFamBas_1.02054,459,215 - 54,511,760 (-)NCBI
UU_Cfam_GSD_1.02054,656,459 - 54,708,656 (-)NCBI
Catsperd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118214,506,879 - 214,547,990 (-)NCBI
SpeTri2.0NW_0049365883,287,334 - 3,327,748 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CATSPERD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl273,207,273 - 73,265,866 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1273,207,458 - 73,266,158 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2273,729,386 - 73,788,177 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103234338
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.165,371,611 - 5,425,288 (+)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236673101,485 - 16,140 (-)NCBIVero_WHO_p1.0
Catsperd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248284,440,674 - 4,494,732 (-)NCBIHetGla_female_1.0hetGla2


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9114209783Rat
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:87
Count of miRNA genes:80
Interacting mature miRNAs:87
Transcripts:ENSRNOT00000071207
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 13
Low 3 27 23 7 19 7 2 2 74 35 28 11 2
Below cutoff 16 34 34 34 6 9 6

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000071207   ⟹   ENSRNOP00000067404
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl91,460,001 - 1,498,337 (+)Ensembl
Rnor_6.0 Ensembl910,390,308 - 10,427,746 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000094106   ⟹   ENSRNOP00000094218
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl91,463,723 - 1,498,333 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000100019   ⟹   ENSRNOP00000086900
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl91,461,095 - 1,498,344 (+)Ensembl
RefSeq Acc Id: NM_001134984   ⟹   NP_001128456
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.291,461,095 - 1,498,342 (+)NCBI
Rnor_6.0910,390,307 - 10,427,529 (-)NCBI
Rnor_5.099,387,387 - 9,425,465 (-)NCBI
Celera97,018,321 - 7,052,741 (-)RGD
Sequence:
RefSeq Acc Id: XM_006244340   ⟹   XP_006244402
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.291,460,209 - 1,498,342 (+)NCBI
Rnor_6.0910,390,307 - 10,428,549 (-)NCBI
Rnor_5.099,387,387 - 9,425,465 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008766772   ⟹   XP_008764994
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.291,459,980 - 1,498,342 (+)NCBI
Rnor_6.0910,390,307 - 10,428,666 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596636   ⟹   XP_017452125
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.291,460,007 - 1,498,342 (+)NCBI
Rnor_6.0910,390,307 - 10,428,666 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596637   ⟹   XP_017452126
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.291,460,207 - 1,498,342 (+)NCBI
Rnor_6.0910,390,307 - 10,428,549 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596638   ⟹   XP_017452127
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.291,460,207 - 1,498,342 (+)NCBI
Rnor_6.0910,390,307 - 10,428,549 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596639   ⟹   XP_017452128
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.291,460,205 - 1,497,718 (+)NCBI
Rnor_6.0910,390,902 - 10,428,549 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596640   ⟹   XP_017452129
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.291,460,207 - 1,497,901 (+)NCBI
Rnor_6.0910,390,646 - 10,428,549 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039084200   ⟹   XP_038940128
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.291,459,967 - 1,498,342 (+)NCBI
RefSeq Acc Id: XM_039084201   ⟹   XP_038940129
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.291,460,014 - 1,498,342 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001128456   ⟸   NM_001134984
- Peptide Label: precursor
- UniProtKB: B5DFM7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006244402   ⟸   XM_006244340
- Peptide Label: isoform X1
- UniProtKB: A0A0H2UI41 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008764994   ⟸   XM_008766772
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_017452125   ⟸   XM_017596636
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017452127   ⟸   XM_017596638
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017452126   ⟸   XM_017596637
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017452129   ⟸   XM_017596640
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_017452128   ⟸   XM_017596639
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSRNOP00000067404   ⟸   ENSRNOT00000071207
RefSeq Acc Id: XP_038940128   ⟸   XM_039084200
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038940129   ⟸   XM_039084201
- Peptide Label: isoform X9
RefSeq Acc Id: ENSRNOP00000086900   ⟸   ENSRNOT00000100019
RefSeq Acc Id: ENSRNOP00000094218   ⟸   ENSRNOT00000094106

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B5DFM7-F1-model_v2 AlphaFold B5DFM7 1-803 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
9 9400070 9400071 C T snv HWY/Slc (KyushuU)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1594167 AgrOrtholog
BioCyc Gene G2FUF-28520 BioCyc
Ensembl Genes ENSRNOG00000048818 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000067404 ENTREZGENE
  ENSRNOP00000067404.3 UniProtKB/TrEMBL
  ENSRNOP00000086900 ENTREZGENE
  ENSRNOP00000086900.1 UniProtKB/TrEMBL
  ENSRNOP00000094218 ENTREZGENE
  ENSRNOP00000094218.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000071207 ENTREZGENE
  ENSRNOT00000071207.3 UniProtKB/TrEMBL
  ENSRNOT00000094106 ENTREZGENE
  ENSRNOT00000094106.1 UniProtKB/TrEMBL
  ENSRNOT00000100019 ENTREZGENE
  ENSRNOT00000100019.1 UniProtKB/TrEMBL
InterPro CATSPERD/E UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:680264 UniProtKB/Swiss-Prot
NCBI Gene 680264 ENTREZGENE
PANTHER PTHR33722 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CATSPERD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Catsperd PhenoGen
UniProt A0A0H2UI41 ENTREZGENE
  A0A8I6A393_RAT UniProtKB/TrEMBL
  A0A8I6AZN7_RAT UniProtKB/TrEMBL
  A0A8L2QY57_RAT UniProtKB/TrEMBL
  B5DFM7 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A0A0H2UI41 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-11 Catsperd  cation channel sperm associated auxiliary subunit delta  Catsperd  catsper channel auxiliary subunit delta  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-10-16 Catsperd  catsper channel auxiliary subunit delta  Tmem146  transmembrane protein 146  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-05 Tmem146  transmembrane protein 146  LOC680264  hypothetical protein LOC680264  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC680264  hypothetical protein LOC680264      Symbol and Name status set to provisional 70820 PROVISIONAL