Catsperd (cation channel sperm associated auxiliary subunit delta) - Rat Genome Database

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Gene: Catsperd (cation channel sperm associated auxiliary subunit delta) Rattus norvegicus
Analyze
Symbol: Catsperd
Name: cation channel sperm associated auxiliary subunit delta
RGD ID: 1594167
Description: Predicted to be involved in flagellated sperm motility and sperm capacitation. Predicted to be located in cilium. Predicted to be part of CatSper complex. Predicted to be active in sperm principal piece. Orthologous to human CATSPERD (cation channel sperm associated auxiliary subunit delta); INTERACTS WITH bisphenol A; Cuprizon; endosulfan.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cation channel sperm-associated auxiliary subunit delta; cation channel sperm-associated protein subunit delta; catsper channel auxiliary subunit delta; catSper-delta; catSperdelta; hypothetical protein LOC680264; LOC680264; MGC189565; Tmem146; transmembrane protein 146
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr891,546,903 - 1,585,470 (+)NCBIGRCr8
mRatBN7.291,459,967 - 1,498,342 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl91,460,001 - 1,498,344 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx91,894,527 - 1,932,435 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.097,244,705 - 7,281,579 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.096,199,732 - 6,237,632 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0910,390,307 - 10,428,666 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl910,390,308 - 10,427,746 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.099,387,387 - 9,425,465 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera97,018,321 - 7,052,741 (-)NCBICelera
Cytogenetic Map9q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
CatSper complex  (IBA,IEA,ISO,ISS)
motile cilium  (IEA)
sperm principal piece  (IBA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15632090   PMID:21224844  


Genomics

Comparative Map Data
Catsperd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr891,546,903 - 1,585,470 (+)NCBIGRCr8
mRatBN7.291,459,967 - 1,498,342 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl91,460,001 - 1,498,344 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx91,894,527 - 1,932,435 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.097,244,705 - 7,281,579 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.096,199,732 - 6,237,632 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0910,390,307 - 10,428,666 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl910,390,308 - 10,427,746 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.099,387,387 - 9,425,465 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera97,018,321 - 7,052,741 (-)NCBICelera
Cytogenetic Map9q11NCBI
CATSPERD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38195,720,637 - 5,778,734 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl195,720,637 - 5,778,734 (+)EnsemblGRCh38hg38GRCh38
GRCh37195,720,648 - 5,778,745 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36195,671,688 - 5,729,742 (+)NCBINCBI36Build 36hg18NCBI36
Celera195,658,055 - 5,716,734 (+)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef195,481,184 - 5,539,676 (+)NCBIHuRef
CHM1_1195,720,301 - 5,778,354 (+)NCBICHM1_1
T2T-CHM13v2.0195,707,310 - 5,765,529 (+)NCBIT2T-CHM13v2.0
Catsperd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391756,933,917 - 56,971,456 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1756,935,143 - 56,971,456 (+)EnsemblGRCm39 Ensembl
GRCm381756,626,911 - 56,664,456 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1756,628,143 - 56,664,456 (+)EnsemblGRCm38mm10GRCm38
MGSCv371756,767,566 - 56,803,879 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361756,335,998 - 56,349,578 (+)NCBIMGSCv36mm8
Celera1760,972,342 - 61,008,586 (+)NCBICelera
Cytogenetic Map17DNCBI
cM Map1729.43NCBI
Catsperd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554953,663,878 - 3,711,595 (-)NCBIChiLan1.0ChiLan1.0
CATSPERD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22010,115,163 - 10,174,109 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1199,341,339 - 9,400,316 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0194,736,106 - 4,792,440 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1195,671,346 - 5,722,150 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl195,671,403 - 5,722,095 (+)Ensemblpanpan1.1panPan2
CATSPERD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12054,260,014 - 54,312,504 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2054,260,046 - 54,312,277 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2053,987,455 - 54,039,467 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02054,912,668 - 54,951,312 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12053,978,667 - 54,030,999 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02054,459,215 - 54,511,760 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02054,656,459 - 54,708,656 (-)NCBIUU_Cfam_GSD_1.0
Catsperd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118214,506,879 - 214,547,990 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365883,287,334 - 3,327,748 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CATSPERD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl273,207,273 - 73,265,866 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1273,207,458 - 73,266,158 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2273,729,386 - 73,788,177 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103234338
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.165,371,611 - 5,425,288 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236673101,485 - 16,140 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Catsperd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248284,440,674 - 4,494,732 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Catsperd
160 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:87
Count of miRNA genes:80
Interacting mature miRNAs:87
Transcripts:ENSRNOT00000071207
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9114209783Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001134984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC169121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000071207   ⟹   ENSRNOP00000067404
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl91,460,001 - 1,498,337 (+)Ensembl
Rnor_6.0 Ensembl910,390,308 - 10,427,746 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000094106   ⟹   ENSRNOP00000094218
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl91,463,723 - 1,498,333 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100019   ⟹   ENSRNOP00000086900
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl91,461,095 - 1,498,344 (+)Ensembl
RefSeq Acc Id: NM_001134984   ⟹   NP_001128456
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr891,548,232 - 1,585,470 (+)NCBI
mRatBN7.291,461,095 - 1,498,342 (+)NCBI
Rnor_6.0910,390,307 - 10,427,529 (-)NCBI
Rnor_5.099,387,387 - 9,425,465 (-)NCBI
Celera97,018,321 - 7,052,741 (-)RGD
Sequence:
RefSeq Acc Id: XM_006244340   ⟹   XP_006244402
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr891,547,519 - 1,585,470 (+)NCBI
mRatBN7.291,460,209 - 1,498,342 (+)NCBI
Rnor_6.0910,390,307 - 10,428,549 (-)NCBI
Rnor_5.099,387,387 - 9,425,465 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008766772   ⟹   XP_008764994
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr891,547,112 - 1,585,470 (+)NCBI
mRatBN7.291,459,980 - 1,498,342 (+)NCBI
Rnor_6.0910,390,307 - 10,428,666 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596636   ⟹   XP_017452125
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr891,547,152 - 1,585,470 (+)NCBI
mRatBN7.291,460,007 - 1,498,342 (+)NCBI
Rnor_6.0910,390,307 - 10,428,666 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596637   ⟹   XP_017452126
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr891,547,519 - 1,585,470 (+)NCBI
mRatBN7.291,460,207 - 1,498,342 (+)NCBI
Rnor_6.0910,390,307 - 10,428,549 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596639   ⟹   XP_017452128
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr891,547,514 - 1,585,470 (+)NCBI
mRatBN7.291,460,205 - 1,497,718 (+)NCBI
Rnor_6.0910,390,902 - 10,428,549 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596640   ⟹   XP_017452129
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr891,547,515 - 1,585,470 (+)NCBI
mRatBN7.291,460,207 - 1,497,901 (+)NCBI
Rnor_6.0910,390,646 - 10,428,549 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039084200   ⟹   XP_038940128
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr891,547,113 - 1,585,470 (+)NCBI
mRatBN7.291,459,967 - 1,498,342 (+)NCBI
RefSeq Acc Id: XM_063267708   ⟹   XP_063123778
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr891,548,353 - 1,585,470 (+)NCBI
RefSeq Acc Id: XM_063267709   ⟹   XP_063123779
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr891,547,518 - 1,585,470 (+)NCBI
RefSeq Acc Id: XM_063267710   ⟹   XP_063123780
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr891,548,354 - 1,585,470 (+)NCBI
RefSeq Acc Id: XM_063267711   ⟹   XP_063123781
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr891,548,351 - 1,585,470 (+)NCBI
RefSeq Acc Id: XM_063267712   ⟹   XP_063123782
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr891,548,352 - 1,585,470 (+)NCBI
RefSeq Acc Id: XM_063267714   ⟹   XP_063123784
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr891,548,352 - 1,585,470 (+)NCBI
RefSeq Acc Id: XM_063267715   ⟹   XP_063123785
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr891,548,349 - 1,585,470 (+)NCBI
RefSeq Acc Id: XM_063267716   ⟹   XP_063123786
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr891,548,351 - 1,585,470 (+)NCBI
RefSeq Acc Id: XM_063267717   ⟹   XP_063123787
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr891,546,903 - 1,585,470 (+)NCBI
RefSeq Acc Id: XM_063267718   ⟹   XP_063123788
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr891,559,655 - 1,585,470 (+)NCBI
RefSeq Acc Id: XM_063267720   ⟹   XP_063123790
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr891,548,349 - 1,580,524 (+)NCBI
RefSeq Acc Id: XM_063267721   ⟹   XP_063123791
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr891,563,015 - 1,585,470 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001128456 (Get FASTA)   NCBI Sequence Viewer  
  NP_001419933 (Get FASTA)   NCBI Sequence Viewer  
  NP_001419937 (Get FASTA)   NCBI Sequence Viewer  
  NP_001419938 (Get FASTA)   NCBI Sequence Viewer  
  XP_006244402 (Get FASTA)   NCBI Sequence Viewer  
  XP_008764994 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452125 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452126 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452128 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452129 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940128 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123778 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123779 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123780 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123781 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123782 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123784 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123785 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123786 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123787 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123788 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123790 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123791 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI69121 (Get FASTA)   NCBI Sequence Viewer  
  B5DFM7 (Get FASTA)   NCBI Sequence Viewer  
  EDL83620 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000067404.3
  ENSRNOP00000086900.1
  ENSRNOP00000094218.1
RefSeq Acc Id: NP_001128456   ⟸   NM_001134984
- Peptide Label: precursor
- UniProtKB: A0A8I6AZN7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006244402   ⟸   XM_006244340
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_008764994   ⟸   XM_008766772
- Peptide Label: isoform X15
- Sequence:
RefSeq Acc Id: XP_017452125   ⟸   XM_017596636
- Peptide Label: isoform X6
- UniProtKB: A0A8L2QY57 (UniProtKB/TrEMBL),   A0A8I6AZN7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452126   ⟸   XM_017596637
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_017452129   ⟸   XM_017596640
- Peptide Label: isoform X13
- UniProtKB: A0A8I6A393 (UniProtKB/TrEMBL),   A0A8I6AZN7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452128   ⟸   XM_017596639
- Peptide Label: isoform X10
- Sequence:
Ensembl Acc Id: ENSRNOP00000067404   ⟸   ENSRNOT00000071207
RefSeq Acc Id: XP_038940128   ⟸   XM_039084200
- Peptide Label: isoform X12
- UniProtKB: A0A8I6AZN7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000086900   ⟸   ENSRNOT00000100019
Ensembl Acc Id: ENSRNOP00000094218   ⟸   ENSRNOT00000094106
RefSeq Acc Id: XP_063123787   ⟸   XM_063267717
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063123779   ⟸   XM_063267709
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063123785   ⟸   XM_063267715
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063123790   ⟸   XM_063267720
- Peptide Label: isoform X17
RefSeq Acc Id: XP_063123781   ⟸   XM_063267711
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063123786   ⟸   XM_063267716
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063123784   ⟸   XM_063267714
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063123782   ⟸   XM_063267712
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063123778   ⟸   XM_063267708
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063123780   ⟸   XM_063267710
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063123788   ⟸   XM_063267718
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063123791   ⟸   XM_063267721
- Peptide Label: isoform X18
Protein Domains
CATSPERD beta-propeller   CATSPERD/E C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B5DFM7-F1-model_v2 AlphaFold B5DFM7 1-803 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1594167 AgrOrtholog
BioCyc Gene G2FUF-28520 BioCyc
Ensembl Genes ENSRNOG00000048818 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000071207.3 UniProtKB/TrEMBL
  ENSRNOT00000094106.1 UniProtKB/TrEMBL
  ENSRNOT00000100019.1 UniProtKB/TrEMBL
InterPro CATSPERD/E UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CATSPERD/E_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CATSPERD_b-prop UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:680264 UniProtKB/Swiss-Prot
NCBI Gene 680264 ENTREZGENE
PANTHER CATION CHANNEL SPERM-ASSOCIATED PROTEIN SUBUNIT DELTA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR33722 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CATSPERD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CATSPERD-E_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Catsperd PhenoGen
RatGTEx ENSRNOG00000048818 RatGTEx
UniProt A0A0H2UI41 ENTREZGENE
  A0A8I6A393 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AZN7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2QY57 ENTREZGENE, UniProtKB/TrEMBL
  A6KQW2_RAT UniProtKB/TrEMBL
  B5DFM7 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A0A0H2UI41 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-11 Catsperd  cation channel sperm associated auxiliary subunit delta  Catsperd  catsper channel auxiliary subunit delta  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-10-16 Catsperd  catsper channel auxiliary subunit delta  Tmem146  transmembrane protein 146  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-05 Tmem146  transmembrane protein 146  LOC680264  hypothetical protein LOC680264  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC680264  hypothetical protein LOC680264      Symbol and Name status set to provisional 70820 PROVISIONAL