Ccdc57 (coiled-coil domain containing 57) - Rat Genome Database

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Gene: Ccdc57 (coiled-coil domain containing 57) Rattus norvegicus
Analyze
Symbol: Ccdc57
Name: coiled-coil domain containing 57
RGD ID: 1590047
Description: Predicted to be involved in several processes, including G2/M transition of mitotic cell cycle; cilium assembly; and microtubule cytoskeleton organization. Predicted to be located in centriolar satellite; centriole; and spindle microtubule. Orthologous to human CCDC57 (coiled-coil domain containing 57); INTERACTS WITH 4,4'-sulfonyldiphenol; atrazine; bisphenol A.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coiled-coil domain-containing protein 57; LOC108352168; LOC688324; similar to ribosome binding protein 1 homolog (dog); uncharacterized LOC108352168
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810106,591,106 - 106,694,740 (-)NCBIGRCr8
mRatBN7.210106,092,784 - 106,196,405 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10106,092,947 - 106,196,077 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.010110,046,012 - 110,110,775 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10110,008,603 - 110,101,872 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010109,636,840 - 109,685,510 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.010109,687,052 - 109,699,351 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera10104,636,552 - 104,735,896 (-)NCBICelera
Cytogenetic Map10q32.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
centriolar satellite  (IBA,ISO)
centriole  (IBA,ISO)
centrosome  (ISO)
spindle microtubule  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Ccdc57
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810106,591,106 - 106,694,740 (-)NCBIGRCr8
mRatBN7.210106,092,784 - 106,196,405 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10106,092,947 - 106,196,077 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.010110,046,012 - 110,110,775 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10110,008,603 - 110,101,872 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010109,636,840 - 109,685,510 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.010109,687,052 - 109,699,351 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera10104,636,552 - 104,735,896 (-)NCBICelera
Cytogenetic Map10q32.3NCBI
CCDC57
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381782,101,470 - 82,212,842 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1782,101,460 - 82,212,878 (-)EnsemblGRCh38hg38GRCh38
GRCh371780,059,346 - 80,170,718 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361777,652,635 - 77,763,978 (-)NCBINCBI36Build 36hg18NCBI36
Celera1776,681,026 - 76,765,150 (-)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1775,459,297 - 75,569,726 (-)NCBIHuRef
CHM1_11780,145,516 - 80,256,926 (-)NCBICHM1_1
T2T-CHM13v2.01782,968,627 - 83,080,766 (-)NCBIT2T-CHM13v2.0
Ccdc57
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911120,717,355 - 120,823,703 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11120,717,355 - 120,823,698 (-)EnsemblGRCm39 Ensembl
GRCm3811120,826,529 - 120,932,926 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11120,826,529 - 120,932,872 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711120,687,856 - 120,794,186 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611120,642,632 - 120,748,962 (-)NCBIMGSCv36mm8
Celera11132,563,033 - 132,669,559 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1184.59NCBI
Ccdc57
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955506954,172 - 1,060,943 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955506954,473 - 1,060,703 (+)NCBIChiLan1.0ChiLan1.0
CCDC57
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21998,637,880 - 98,752,013 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan117103,538,507 - 103,654,647 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01776,507,157 - 76,615,337 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11782,237,937 - 82,429,060 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1782,212,504 - 82,424,953 (-)Ensemblpanpan1.1panPan2
CCDC57
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.19134,978 - 229,859 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl9135,000 - 230,183 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha9730,420 - 832,160 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.09721,811 - 823,622 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl9721,677 - 770,168 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.19746,863 - 848,582 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.09876,823 - 975,483 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.09951,931 - 1,053,771 (+)NCBIUU_Cfam_GSD_1.0
Ccdc57
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602724,073 - 772,598 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365945,613,684 - 5,687,878 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365945,648,250 - 5,687,880 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC57
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl12819,886 - 917,477 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.112819,334 - 896,662 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.212900,795 - 937,629 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC57
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11674,011,224 - 74,089,976 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607745,546,532 - 45,722,748 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc57
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480110,929,077 - 11,001,604 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480110,928,882 - 11,011,776 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ccdc57
347 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:112
Count of miRNA genes:96
Interacting mature miRNAs:102
Transcripts:ENSRNOT00000071893
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1051770177107211142Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1051770177107211142Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1053797385107211142Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062057807107057807Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062057807107057807Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
2317029Aia19Adjuvant induced arthritis QTL 192.98joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1066978955107211142Rat
2317039Aia6Adjuvant induced arthritis QTL 64.31joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)1066978955107211142Rat
10450498Bp384Blood pressure QTL 3840.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1067750049107211142Rat
1642980Bp300Blood pressure QTL 300arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068383129107211142Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068420376107211142Rat
2300172Bmd57Bone mineral density QTL 579.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1069738412107211142Rat
2293646Bss25Bone structure and strength QTL 2510.960.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1069738412107211142Rat
2293663Bss33Bone structure and strength QTL 339.340.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1069738412107211142Rat
6893366Bw106Body weight QTL 1060.30.47body mass (VT:0001259)body weight (CMO:0000012)1070199100107211142Rat
70193Mcs7Mammary carcinoma susceptibility QTL 72.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072224939107211142Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1072224939107211142Rat
2292438Bp311Blood pressure QTL 311arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1076246085107211142Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1076452683107211142Rat
4889492Pancm2Pancreatic morphology QTL 23.2pancreatic beta cell morphology trait (VT:0005217)ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814)1076748906107211142Rat
2303589Bw87Body weight QTL 872body mass (VT:0001259)body weight (CMO:0000012)1081285008107211142Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)1082685200107211142Rat
631538Oia5Oil induced arthritis QTL 5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087055121107211142Rat
61363Oia3Oil induced arthritis QTL 30.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087307617107211142Rat
634320Niddm49Non-insulin dependent diabetes mellitus QTL 494.41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1088539139107211142Rat
12880395Cm109Cardiac mass QTL 1090.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)1090404397107211142Rat
12880396Am13Aortic mass QTL 130.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1090404397107211142Rat
12880398Kidm67Kidney mass QTL 670.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1090404397107211142Rat
12880384Cm107Cardiac mass QTL 1070.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)90404397107211142Rat
12880385Cm108Cardiac mass QTL 1080.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)90404397107211142Rat
1579915Bp280Blood pressure QTL 2800.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1090404397107211142Rat
1300137Bp186Blood pressure QTL 1863.57arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1090627439107057807Rat
724530Bp149Blood pressure QTL 1490.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1090627439107211142Rat
1354641Bvd2Brain ventricular dilatation QTL 26.360.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)1093223816107057807Rat
10450493Bp382Blood pressure QTL 3820.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1094759759107211142Rat
2292436Bp310Blood pressure QTL 310arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1094759759107211142Rat
1578663Bss18Bone structure and strength QTL 183.6femur width (VT:1000666)femoral neck width (CMO:0001695)1096703043107057807Rat
1578672Bmd16Bone mineral density QTL 166.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)1096703043107057807Rat

Markers in Region
D10Wox44  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.210106,093,751 - 106,094,093 (+)MAPPERmRatBN7.2
Rnor_6.010110,009,394 - 110,009,735NCBIRnor6.0
Rnor_5.010109,600,710 - 109,601,051UniSTSRnor5.0
Celera10104,637,532 - 104,637,873UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 15 2 11 3
Low 3 43 42 26 19 26 8 10 59 33 30 8 8
Below cutoff 15 15 15

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_017597826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005490602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005490603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010055923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide FQ231934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000071893   ⟹   ENSRNOP00000066112
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10106,092,947 - 106,196,077 (-)Ensembl
Rnor_6.0 Ensembl10110,008,603 - 110,101,872 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000095877   ⟹   ENSRNOP00000081645
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10106,092,947 - 106,196,077 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000098223   ⟹   ENSRNOP00000091858
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10106,092,947 - 106,182,161 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000105801   ⟹   ENSRNOP00000078163
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10106,127,290 - 106,196,077 (-)Ensembl
RefSeq Acc Id: XM_039087556   ⟹   XP_038943484
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,591,106 - 106,694,713 (-)NCBI
mRatBN7.210106,092,784 - 106,189,008 (-)NCBI
RefSeq Acc Id: XM_039087559   ⟹   XP_038943487
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,591,106 - 106,694,710 (-)NCBI
mRatBN7.210106,092,784 - 106,189,004 (-)NCBI
RefSeq Acc Id: XM_039087561   ⟹   XP_038943489
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,598,702 - 106,694,716 (-)NCBI
mRatBN7.210106,125,114 - 106,189,015 (-)NCBI
RefSeq Acc Id: XM_039087562   ⟹   XP_038943490
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,625,877 - 106,694,715 (-)NCBI
mRatBN7.210106,127,352 - 106,189,010 (-)NCBI
RefSeq Acc Id: XM_039087563   ⟹   XP_038943491
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,591,106 - 106,694,710 (-)NCBI
mRatBN7.210106,092,784 - 106,189,004 (-)NCBI
RefSeq Acc Id: XM_039087565   ⟹   XP_038943493
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,591,106 - 106,694,711 (-)NCBI
mRatBN7.210106,092,784 - 106,189,006 (-)NCBI
RefSeq Acc Id: XM_039087566   ⟹   XP_038943494
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,591,106 - 106,694,707 (-)NCBI
mRatBN7.210106,092,784 - 106,188,999 (-)NCBI
RefSeq Acc Id: XM_039087567   ⟹   XP_038943495
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,591,106 - 106,694,711 (-)NCBI
mRatBN7.210106,092,784 - 106,196,378 (-)NCBI
RefSeq Acc Id: XM_039087568   ⟹   XP_038943496
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,591,106 - 106,694,711 (-)NCBI
mRatBN7.210106,092,784 - 106,189,006 (-)NCBI
RefSeq Acc Id: XM_039087569   ⟹   XP_038943497
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,591,106 - 106,694,707 (-)NCBI
mRatBN7.210106,092,784 - 106,196,375 (-)NCBI
RefSeq Acc Id: XM_039087570   ⟹   XP_038943498
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,591,106 - 106,683,746 (-)NCBI
mRatBN7.210106,092,784 - 106,185,403 (-)NCBI
RefSeq Acc Id: XM_039087571   ⟹   XP_038943499
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,591,106 - 106,694,705 (-)NCBI
mRatBN7.210106,092,784 - 106,182,747 (-)NCBI
RefSeq Acc Id: XM_039087572   ⟹   XP_038943500
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,663,572 - 106,694,740 (-)NCBI
mRatBN7.210106,165,227 - 106,192,723 (-)NCBI
RefSeq Acc Id: XM_063270202   ⟹   XP_063126272
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,591,106 - 106,694,726 (-)NCBI
RefSeq Acc Id: XM_063270203   ⟹   XP_063126273
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,591,106 - 106,694,226 (-)NCBI
RefSeq Acc Id: XM_063270204   ⟹   XP_063126274
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,591,106 - 106,694,713 (-)NCBI
RefSeq Acc Id: XM_063270205   ⟹   XP_063126275
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,591,106 - 106,694,726 (-)NCBI
RefSeq Acc Id: XM_063270206   ⟹   XP_063126276
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,591,106 - 106,694,709 (-)NCBI
RefSeq Acc Id: XM_063270207   ⟹   XP_063126277
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,591,106 - 106,694,709 (-)NCBI
RefSeq Acc Id: XM_063270208   ⟹   XP_063126278
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,591,106 - 106,694,709 (-)NCBI
RefSeq Acc Id: XM_063270209   ⟹   XP_063126279
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,591,106 - 106,694,709 (-)NCBI
RefSeq Acc Id: XM_063270210   ⟹   XP_063126280
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,591,106 - 106,694,709 (-)NCBI
RefSeq Acc Id: XM_063270211   ⟹   XP_063126281
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,591,106 - 106,694,709 (-)NCBI
RefSeq Acc Id: XR_005490602
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,628,306 - 106,694,726 (-)NCBI
mRatBN7.210106,129,986 - 106,190,471 (-)NCBI
RefSeq Acc Id: XR_005490603
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,642,355 - 106,694,726 (-)NCBI
mRatBN7.210106,144,039 - 106,189,042 (-)NCBI
RefSeq Acc Id: XR_010055923
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,628,306 - 106,694,726 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000066112   ⟸   ENSRNOT00000071893
RefSeq Acc Id: XP_038943495   ⟸   XM_039087567
- Peptide Label: isoform X9
- UniProtKB: A0A8I5ZSM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038943497   ⟸   XM_039087569
- Peptide Label: isoform X11
- UniProtKB: M0R9E4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038943484   ⟸   XM_039087556
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZSM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038943496   ⟸   XM_039087568
- Peptide Label: isoform X9
- UniProtKB: A0A8I5ZSM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038943493   ⟸   XM_039087565
- Peptide Label: isoform X7
- UniProtKB: A0A8I5ZSM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038943491   ⟸   XM_039087563
- Peptide Label: isoform X6
- UniProtKB: M0R9E4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038943487   ⟸   XM_039087559
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZSM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038943494   ⟸   XM_039087566
- Peptide Label: isoform X8
- UniProtKB: M0R9E4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038943498   ⟸   XM_039087570
- Peptide Label: isoform X11
- UniProtKB: M0R9E4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038943499   ⟸   XM_039087571
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038943489   ⟸   XM_039087561
- Peptide Label: isoform X4
- UniProtKB: A0A8I5ZSM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038943490   ⟸   XM_039087562
- Peptide Label: isoform X5
- UniProtKB: A0A8I5Y209 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038943500   ⟸   XM_039087572
- Peptide Label: isoform X13
RefSeq Acc Id: ENSRNOP00000078163   ⟸   ENSRNOT00000105801
RefSeq Acc Id: ENSRNOP00000091858   ⟸   ENSRNOT00000098223
RefSeq Acc Id: ENSRNOP00000081645   ⟸   ENSRNOT00000095877
RefSeq Acc Id: XP_063126275   ⟸   XM_063270205
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063126272   ⟸   XM_063270202
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063126274   ⟸   XM_063270204
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063126281   ⟸   XM_063270211
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063126279   ⟸   XM_063270209
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063126280   ⟸   XM_063270210
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063126278   ⟸   XM_063270208
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063126276   ⟸   XM_063270206
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063126277   ⟸   XM_063270207
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063126273   ⟸   XM_063270203
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R9E4-F1-model_v2 AlphaFold M0R9E4 1-1016 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1590047 AgrOrtholog
BioCyc Gene G2FUF-22379 BioCyc
Ensembl Genes ENSRNOG00000047531 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000071893.3 UniProtKB/TrEMBL
  ENSRNOT00000095877.1 UniProtKB/TrEMBL
  ENSRNOT00000098223.1 UniProtKB/TrEMBL
  ENSRNOT00000105801.1 UniProtKB/TrEMBL
InterPro CCDC57 UniProtKB/TrEMBL
NCBI Gene 688324 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 57 UniProtKB/TrEMBL
  PTHR46725 UniProtKB/TrEMBL
PhenoGen Ccdc57 PhenoGen
RatGTEx ENSRNOG00000047531 RatGTEx
UniProt A0A8I5Y209 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZSM9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AEG1_RAT UniProtKB/TrEMBL
  M0R9E4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Ccdc57  coiled-coil domain containing 57  LOC108352168  uncharacterized LOC108352168  Data merged from RGD:11454390 737654 PROVISIONAL
2016-08-02 LOC108352168  uncharacterized LOC108352168      Symbol and Name status set to provisional 70820 PROVISIONAL
2014-10-27 Ccdc57  coiled-coil domain containing 57  LOC688324  similar to ribosome binding protein 1 homolog (dog)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC688324  similar to ribosome binding protein 1 homolog (dog)      Symbol and Name status set to provisional 70820 PROVISIONAL