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Gene: Lpin3 (lipin 3) Rattus norvegicus

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Symbol:

Lpin3

Name:

lipin 3

RGD ID:

1588534

Description:

Predicted to enable phosphatidate phosphatase activity and transcription coactivator activity. Predicted to be involved in several processes, including cellular response to insulin stimulus; positive regulation of transcription by RNA polymerase II; and triglyceride biosynthetic process. Predicted to be active in nucleus. Orthologous to human LPIN3 (lipin 3); INTERACTS WITH 6-propyl-2-thiouracil; amitrole; amphetamine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC362261; MGC109016; phosphatidate phosphatase LPIN3; similar to lipin 3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	LPIN3 (lipin 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Lpin3 (lipin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Lpin3 (lipin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LPIN3 (lipin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LPIN3 (lipin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Lpin3 (lipin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LPIN3 (lipin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LPIN3 (lipin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Lpin3 (lipin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Lpin3 (lipin 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	LPIN3 (lipin 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	zgc:123305	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	PAH1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Lpin	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	lpin-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	lpin3	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	169,953,479 - 169,978,034 (+)	NCBI		GRCr8
mRatBN7.2	3	149,533,719 - 149,558,494 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	149,534,051 - 149,558,327 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	153,358,261 - 153,371,255 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	161,857,652 - 161,870,646 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	159,597,498 - 159,610,482 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	156,874,805 - 156,899,601 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	156,886,454 - 156,899,436 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	163,102,102 - 163,126,692 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	151,689,960 - 151,702,944 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	148,217,925 - 148,230,909 (+)	NCBI		Celera
Cytogenetic Map	3	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lpin3	Rat	focal epilepsy		ISO	LPIN3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Focal-onset seizure	ClinVar	PMID:32581362

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lpin3	Rat	(1->4)-beta-D-glucan	multiple interactions	ISO	Lpin3 (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of LPIN3 mRNA	CTD	PMID:36331819
Lpin3	Rat	1,2-dimethylhydrazine	decreases expression	ISO	Lpin3 (Mus musculus)	6480464	1 and 2-Dimethylhydrazine results in decreased expression of LPIN3 mRNA	CTD	PMID:22206623
Lpin3	Rat	2,2',4,4',5,5'-hexachlorobiphenyl	multiple interactions	ISO	Lpin3 (Mus musculus)	6480464	[Tetrachlorodibenzodioxin co-treated with 2 more ...	CTD	PMID:28433925
Lpin3	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	Lpin3 (Mus musculus)	6480464	Tetrachlorodibenzodioxin affects the expression of LPIN3 mRNA	CTD	PMID:21570461 and PMID:26377647
Lpin3	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	ISO	Lpin3 (Mus musculus)	6480464	Tetrachlorodibenzodioxin results in increased expression of LPIN3 mRNA	CTD	PMID:28238261
Lpin3	Rat	2,3,7,8-tetrachlorodibenzodioxine	multiple interactions	ISO	Lpin3 (Mus musculus)	6480464	[Tetrachlorodibenzodioxin co-treated with 2 more ...	CTD	PMID:28433925
Lpin3	Rat	3,3',5-triiodo-L-thyronine	increases expression	ISO	Lpin3 (Mus musculus)	6480464	Triiodothyronine results in increased expression of LPIN3 mRNA	CTD	PMID:25172293
Lpin3	Rat	4,4'-sulfonyldiphenol	increases expression	ISO	Lpin3 (Mus musculus)	6480464	bisphenol S results in increased expression of LPIN3 mRNA	CTD	PMID:39298647
Lpin3	Rat	4-hydroxyphenyl retinamide	increases expression	ISO	Lpin3 (Mus musculus)	6480464	Fenretinide results in increased expression of LPIN3 mRNA	CTD	PMID:28973697
Lpin3	Rat	6-(4-chlorophenyl)imidazo[2,1-b][1,3]thiazole-5-carbaldehyde O-(3,4-dichlorobenzyl)oxime	multiple interactions	ISO	LPIN3 (Homo sapiens)	6480464	[6-(4-chlorophenyl)imidazo(2 more ...	CTD	PMID:30611723
Lpin3	Rat	6-propyl-2-thiouracil	decreases expression	EXP		6480464	Propylthiouracil results in decreased expression of LPIN3 mRNA	CTD	PMID:24780913 and PMID:30047161
Lpin3	Rat	amiodarone	increases expression	ISO	Lpin3 (Mus musculus)	6480464	Amiodarone results in increased expression of LPIN3 mRNA	CTD	PMID:24489787
Lpin3	Rat	amitrole	decreases expression	EXP		6480464	Amitrole results in decreased expression of LPIN3 mRNA	CTD	PMID:30047161
Lpin3	Rat	amphetamine	decreases expression	EXP		6480464	Amphetamine results in decreased expression of LPIN3 mRNA	CTD	PMID:30779732
Lpin3	Rat	aristolochic acid A	decreases expression	ISO	LPIN3 (Homo sapiens)	6480464	aristolochic acid I results in decreased expression of LPIN3 mRNA and aristolochic acid I results in decreased expression of LPIN3 protein	CTD	PMID:33212167
Lpin3	Rat	arsenous acid	increases expression	ISO	Lpin3 (Mus musculus)	6480464	Arsenic Trioxide results in increased expression of LPIN3 mRNA	CTD	PMID:35676786
Lpin3	Rat	atrazine	decreases expression	EXP		6480464	Atrazine results in decreased expression of LPIN3 mRNA	CTD	PMID:36841081
Lpin3	Rat	azoxystrobin	multiple interactions	EXP		6480464	[azoxystrobin co-treated with 2-chloro-N-(4-chlorobiphenyl-2-yl)nicotinamide co-treated with Chlorpyrifos co-treated with Glyphosate co-treated with imidacloprid co-treated with Thiabendazole] results in increased expression of LPIN3 mRNA	CTD	PMID:33854195
Lpin3	Rat	benzo[a]pyrene	increases expression	ISO	Lpin3 (Mus musculus)	6480464	Benzo(a)pyrene results in increased expression of LPIN3 mRNA	CTD	PMID:27195522
Lpin3	Rat	benzo[a]pyrene	decreases methylation	ISO	Lpin3 (Mus musculus)	6480464	Benzo(a)pyrene results in decreased methylation of LPIN3 5' UTR more ...	CTD	PMID:27901495
Lpin3	Rat	benzo[a]pyrene	decreases methylation	ISO	LPIN3 (Homo sapiens)	6480464	Benzo(a)pyrene results in decreased methylation of LPIN3 promoter	CTD	PMID:27901495
Lpin3	Rat	beta-lapachone	increases expression	ISO	LPIN3 (Homo sapiens)	6480464	beta-lapachone results in increased expression of LPIN3 mRNA	CTD	PMID:38218311
Lpin3	Rat	bis(2-ethylhexyl) phthalate	multiple interactions	ISO	Lpin3 (Mus musculus)	6480464	[Tetrachlorodibenzodioxin co-treated with 2 more ...	CTD	PMID:28433925
Lpin3	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of LPIN3 mRNA	CTD	PMID:25181051
Lpin3	Rat	bisphenol A	multiple interactions	ISO	LPIN3 (Homo sapiens)	6480464	[bisphenol A co-treated with Fulvestrant] results in increased methylation of LPIN3 gene	CTD	PMID:31601247
Lpin3	Rat	bisphenol A	increases methylation	ISO	Lpin3 (Mus musculus)	6480464	bisphenol A results in increased methylation of LPIN3 promoter	CTD	PMID:27312807
Lpin3	Rat	bisphenol A	multiple interactions	ISO	Lpin3 (Mus musculus)	6480464	[Tetrachlorodibenzodioxin co-treated with 2 more ...	CTD	PMID:28433925
Lpin3	Rat	caffeine	increases phosphorylation	ISO	LPIN3 (Homo sapiens)	6480464	Caffeine results in increased phosphorylation of LPIN3 protein	CTD	PMID:35688186
Lpin3	Rat	camptothecin	increases expression	ISO	LPIN3 (Homo sapiens)	6480464	Camptothecin results in increased expression of LPIN3 mRNA	CTD	PMID:38460933
Lpin3	Rat	CGP 52608	multiple interactions	ISO	LPIN3 (Homo sapiens)	6480464	CGP 52608 promotes the reaction [RORA protein binds to LPIN3 gene]	CTD	PMID:28238834
Lpin3	Rat	chlorpyrifos	multiple interactions	EXP		6480464	[azoxystrobin co-treated with 2-chloro-N-(4-chlorobiphenyl-2-yl)nicotinamide co-treated with Chlorpyrifos co-treated with Glyphosate co-treated with imidacloprid co-treated with Thiabendazole] results in increased expression of LPIN3 mRNA	CTD	PMID:33854195
Lpin3	Rat	choline	multiple interactions	ISO	Lpin3 (Mus musculus)	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased expression of LPIN3 mRNA	CTD	PMID:20938992
Lpin3	Rat	cisplatin	increases expression	ISO	LPIN3 (Homo sapiens)	6480464	Cisplatin results in increased expression of LPIN3 mRNA	CTD	PMID:27392435
Lpin3	Rat	cisplatin	multiple interactions	ISO	LPIN3 (Homo sapiens)	6480464	[Cisplatin co-treated with jinfukang] results in increased expression of LPIN3 mRNA	CTD	PMID:27392435
Lpin3	Rat	copper(II) chloride	decreases expression	ISO	LPIN3 (Homo sapiens)	6480464	cupric chloride results in decreased expression of LPIN3 mRNA	CTD	PMID:38568856
Lpin3	Rat	coumarin	increases phosphorylation	ISO	LPIN3 (Homo sapiens)	6480464	coumarin results in increased phosphorylation of LPIN3 protein	CTD	PMID:35688186
Lpin3	Rat	cyclosporin A	decreases methylation	ISO	LPIN3 (Homo sapiens)	6480464	Cyclosporine results in decreased methylation of LPIN3 promoter	CTD	PMID:27989131
Lpin3	Rat	diarsenic trioxide	increases expression	ISO	Lpin3 (Mus musculus)	6480464	Arsenic Trioxide results in increased expression of LPIN3 mRNA	CTD	PMID:35676786
Lpin3	Rat	dibutyl phthalate	increases expression	EXP		6480464	Dibutyl Phthalate results in increased expression of LPIN3 mRNA	CTD	PMID:21266533
Lpin3	Rat	dibutyl phthalate	affects expression	EXP		6480464	Dibutyl Phthalate affects the expression of LPIN3 mRNA	CTD	PMID:30934153
Lpin3	Rat	doxorubicin	decreases expression	ISO	LPIN3 (Homo sapiens)	6480464	Doxorubicin results in decreased expression of LPIN3 mRNA	CTD	PMID:29803840
Lpin3	Rat	endosulfan	decreases expression	EXP		6480464	Endosulfan results in decreased expression of LPIN3 mRNA	CTD	PMID:29391264
Lpin3	Rat	farnesol	decreases expression	ISO	LPIN3 (Homo sapiens)	6480464	Farnesol analog results in decreased expression of LPIN3 mRNA	CTD	PMID:30611723
Lpin3	Rat	flutamide	increases expression	EXP		6480464	Flutamide results in increased expression of LPIN3 mRNA	CTD	PMID:24136188
Lpin3	Rat	folic acid	multiple interactions	ISO	Lpin3 (Mus musculus)	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased expression of LPIN3 mRNA	CTD	PMID:20938992
Lpin3	Rat	FR900359	increases phosphorylation	ISO	LPIN3 (Homo sapiens)	6480464	FR900359 results in increased phosphorylation of LPIN3 protein	CTD	PMID:37730182
Lpin3	Rat	fulvestrant	multiple interactions	ISO	LPIN3 (Homo sapiens)	6480464	[bisphenol A co-treated with Fulvestrant] results in increased methylation of LPIN3 gene	CTD	PMID:31601247
Lpin3	Rat	glyphosate	multiple interactions	EXP		6480464	[azoxystrobin co-treated with 2-chloro-N-(4-chlorobiphenyl-2-yl)nicotinamide co-treated with Chlorpyrifos co-treated with Glyphosate co-treated with imidacloprid co-treated with Thiabendazole] results in increased expression of LPIN3 mRNA	CTD	PMID:33854195
Lpin3	Rat	GW 4064	decreases expression	ISO	LPIN3 (Homo sapiens)	6480464	GW 4064 results in decreased expression of LPIN3 mRNA	CTD	PMID:30611723
Lpin3	Rat	GW 4064	multiple interactions	ISO	LPIN3 (Homo sapiens)	6480464	[GW 4064 co-treated with Oleic Acid] results in decreased expression of LPIN3 mRNA	CTD	PMID:30611723
Lpin3	Rat	hydralazine	multiple interactions	ISO	LPIN3 (Homo sapiens)	6480464	[Hydralazine co-treated with Valproic Acid] results in increased expression of LPIN3 mRNA	CTD	PMID:17183730
Lpin3	Rat	imidacloprid	multiple interactions	EXP		6480464	[azoxystrobin co-treated with 2-chloro-N-(4-chlorobiphenyl-2-yl)nicotinamide co-treated with Chlorpyrifos co-treated with Glyphosate co-treated with imidacloprid co-treated with Thiabendazole] results in increased expression of LPIN3 mRNA	CTD	PMID:33854195
Lpin3	Rat	indometacin	increases expression	EXP		6480464	Indomethacin results in increased expression of LPIN3 mRNA	CTD	PMID:36868495
Lpin3	Rat	L-methionine	multiple interactions	ISO	Lpin3 (Mus musculus)	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased expression of LPIN3 mRNA	CTD	PMID:20938992
Lpin3	Rat	leflunomide	decreases expression	ISO	LPIN3 (Homo sapiens)	6480464	leflunomide results in decreased expression of LPIN3 mRNA	CTD	PMID:28988120
Lpin3	Rat	methimazole	decreases expression	EXP		6480464	Methimazole results in decreased expression of LPIN3 mRNA	CTD	PMID:30047161
Lpin3	Rat	niclosamide	increases expression	ISO	LPIN3 (Homo sapiens)	6480464	Niclosamide results in increased expression of LPIN3 mRNA	CTD	PMID:36318118
Lpin3	Rat	okadaic acid	decreases expression	ISO	LPIN3 (Homo sapiens)	6480464	Okadaic Acid results in decreased expression of LPIN3 mRNA	CTD	PMID:38832940
Lpin3	Rat	oleic acid	multiple interactions	ISO	LPIN3 (Homo sapiens)	6480464	[6-(4-chlorophenyl)imidazo(2 more ...	CTD	PMID:30611723
Lpin3	Rat	oleic acid	decreases expression	ISO	LPIN3 (Homo sapiens)	6480464	Oleic Acid results in decreased expression of LPIN3 mRNA	CTD	PMID:30611723
Lpin3	Rat	paracetamol	affects expression	ISO	Lpin3 (Mus musculus)	6480464	Acetaminophen affects the expression of LPIN3 mRNA	CTD	PMID:17562736
Lpin3	Rat	paracetamol	decreases expression	EXP		6480464	Acetaminophen results in decreased expression of LPIN3 mRNA	CTD	PMID:33387578
Lpin3	Rat	paracetamol	decreases expression	ISO	LPIN3 (Homo sapiens)	6480464	Acetaminophen results in decreased expression of LPIN3 mRNA	CTD	PMID:29067470
Lpin3	Rat	perfluorononanoic acid	decreases expression	ISO	LPIN3 (Homo sapiens)	6480464	perfluoro-n-nonanoic acid results in decreased expression of LPIN3 mRNA	CTD	PMID:32588087
Lpin3	Rat	perfluorooctane-1-sulfonic acid	multiple interactions	ISO	Lpin3 (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of LPIN3 mRNA	CTD	PMID:36331819
Lpin3	Rat	phenobarbital	increases expression	ISO	Lpin3 (Mus musculus)	6480464	Phenobarbital results in increased expression of LPIN3 mRNA	CTD	PMID:19482888
Lpin3	Rat	phenobarbital	multiple interactions	ISO	Lpin3 (Mus musculus)	6480464	NR1I3 protein affects the reaction [Phenobarbital results in increased expression of LPIN3 mRNA]	CTD	PMID:19482888
Lpin3	Rat	silver atom	increases expression	ISO	Lpin3 (Mus musculus)	6480464	Silver results in increased expression of LPIN3 mRNA	CTD	PMID:27131904
Lpin3	Rat	silver(0)	increases expression	ISO	Lpin3 (Mus musculus)	6480464	Silver results in increased expression of LPIN3 mRNA	CTD	PMID:27131904
Lpin3	Rat	sodium arsenite	affects methylation	ISO	LPIN3 (Homo sapiens)	6480464	sodium arsenite affects the methylation of LPIN3 gene	CTD	PMID:28589171
Lpin3	Rat	sodium arsenite	decreases expression	ISO	LPIN3 (Homo sapiens)	6480464	sodium arsenite results in decreased expression of LPIN3 mRNA	CTD	PMID:38568856
Lpin3	Rat	sunitinib	decreases expression	ISO	LPIN3 (Homo sapiens)	6480464	Sunitinib results in decreased expression of LPIN3 mRNA	CTD	PMID:31533062
Lpin3	Rat	thiabendazole	multiple interactions	EXP		6480464	[azoxystrobin co-treated with 2-chloro-N-(4-chlorobiphenyl-2-yl)nicotinamide co-treated with Chlorpyrifos co-treated with Glyphosate co-treated with imidacloprid co-treated with Thiabendazole] results in increased expression of LPIN3 mRNA	CTD	PMID:33854195
Lpin3	Rat	thioacetamide	decreases expression	EXP		6480464	Thioacetamide results in decreased expression of LPIN3 mRNA	CTD	PMID:34492290
Lpin3	Rat	thiram	decreases expression	ISO	LPIN3 (Homo sapiens)	6480464	Thiram results in decreased expression of LPIN3 mRNA	CTD	PMID:38568856
Lpin3	Rat	triptonide	increases expression	ISO	Lpin3 (Mus musculus)	6480464	triptonide results in increased expression of LPIN3 mRNA	CTD	PMID:33045310
Lpin3	Rat	trovafloxacin	increases expression	ISO	Lpin3 (Mus musculus)	6480464	trovafloxacin results in increased expression of LPIN3 mRNA	CTD	PMID:35537566
Lpin3	Rat	valproic acid	multiple interactions	ISO	LPIN3 (Homo sapiens)	6480464	[Hydralazine co-treated with Valproic Acid] results in increased expression of LPIN3 mRNA	CTD	PMID:17183730
Lpin3	Rat	vinclozolin	decreases expression	EXP		6480464	vinclozolin results in decreased expression of LPIN3 mRNA	CTD	PMID:23034163

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lpin3	Rat	cellular response to insulin stimulus	involved_in	IBA	FB:FBgn0263593 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Lpin3	Rat	fatty acid catabolic process	involved_in	IBA	MGI:1891340 and PANTHER:PTN000256565	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Lpin3	Rat	positive regulation of transcription by RNA polymerase II	involved_in	IBA	MGI:1891340 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Lpin3	Rat	triglyceride biosynthetic process	involved_in	IBA	FB:FBgn0263593 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lpin3	Rat	nucleus	is_active_in	IBA	FB:FBgn0263593 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lpin3	Rat	hydrolase activity	enables	IEA	UniProtKB-KW:KW-0378	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Lpin3	Rat	phosphatidate phosphatase activity	enables	IEA	UniProtKB:Q99PI4 and ensembl:ENSMUSP00000105082	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Lpin3	Rat	phosphatidate phosphatase activity	enables	ISO	Lpin3 (Mus musculus)	1624291	PMID:17158099	RGD	PMID:17158099
Lpin3	Rat	phosphatidate phosphatase activity	enables	IBA	FB:FBgn0263593 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Lpin3	Rat	transcription coactivator activity	enables	IBA	MGI:1891340 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

BioCyc Pathways

plasmalogen biosynthesis	2-arachidonoylglycerol biosynthesis	anandamide biosynthesis II	diacylglycerol and triacylglycerol biosynthesis

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:12477932	PMID:17158099	PMID:18694939	PMID:23505321

Lpin3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	169,953,479 - 169,978,034 (+)	NCBI		GRCr8
mRatBN7.2	3	149,533,719 - 149,558,494 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	149,534,051 - 149,558,327 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	153,358,261 - 153,371,255 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	161,857,652 - 161,870,646 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	159,597,498 - 159,610,482 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	156,874,805 - 156,899,601 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	156,886,454 - 156,899,436 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	163,102,102 - 163,126,692 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	151,689,960 - 151,702,944 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	148,217,925 - 148,230,909 (+)	NCBI		Celera
Cytogenetic Map	3	q42	NCBI

LPIN3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	41,340,821 - 41,360,582 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	41,340,821 - 41,360,582 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	39,969,461 - 39,989,222 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	39,402,974 - 39,422,636 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	20	36,680,226 - 36,699,888 (+)	NCBI		Celera
Cytogenetic Map	20	q12	NCBI
HuRef	20	36,707,814 - 36,727,419 (+)	NCBI		HuRef
CHM1_1	20	39,873,839 - 39,893,508 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	20	43,072,623 - 43,092,380 (+)	NCBI		T2T-CHM13v2.0

Lpin3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	160,722,590 - 160,747,920 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	160,722,590 - 160,747,922 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	160,880,670 - 160,906,000 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	160,880,670 - 160,906,002 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	160,706,469 - 160,731,528 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	160,572,174 - 160,597,233 (+)	NCBI		MGSCv36	mm8
Celera	2	166,811,402 - 166,836,437 (+)	NCBI		Celera
Cytogenetic Map	2	H2	NCBI
cM Map	2	80.98	NCBI

Lpin3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955445	15,596,832 - 15,615,900 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955445	15,600,510 - 15,616,452 (-)	NCBI	ChiLan1.0	ChiLan1.0

LPIN3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	47,082,827 - 47,102,569 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	47,075,963 - 47,094,729 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	37,682,636 - 37,702,357 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	38,778,785 - 38,798,502 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	38,778,695 - 38,798,502 (+)	Ensembl	panpan1.1		panPan2

LPIN3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	29,343,658 - 29,360,472 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	29,347,627 - 29,399,854 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	28,988,938 - 29,005,758 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	30,048,503 - 30,065,326 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	30,048,549 - 30,065,326 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	29,317,348 - 29,334,163 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	29,420,824 - 29,437,634 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	29,917,336 - 29,934,167 (+)	NCBI		UU_Cfam_GSD_1.0

Lpin3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	178,301,812 - 178,318,993 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936561	431,866 - 443,307 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936561	430,491 - 443,307 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LPIN3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	43,989,333 - 44,006,262 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	43,993,710 - 44,006,188 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	49,433,516 - 49,450,557 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LPIN3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	22,412,858 - 22,432,563 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	22,410,294 - 22,424,587 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666050	71,231,337 - 71,250,938 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lpin3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624790	12,895,047 - 12,906,700 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624790	12,893,588 - 12,910,921 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Lpin3
88 total Variants

Assembly: Rnor_5.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain	Variant Page
3	163116521	163116522	A	G	snv	LE/OrlBarth (UDEL)	View more Information
3	163125388	163125389	T	C	snv	DOB/Oda (KyushuU)	View more Information

Predicted Target Of

	Summary Value
Count of predictions:	377
Count of miRNA genes:	223
Interacting mature miRNAs:	256
Transcripts:	ENSRNOT00000022403
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
12879876	Bw182	Body weight QTL 182		0.003	body mass (VT:0001259)	body weight (CMO:0000012)	3	145925360	166177555	Rat
2301411	Bp320	Blood pressure QTL 320		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	145925360	166177555	Rat
2312673	Scl63	Serum cholesterol level QTL 63		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	98535255	168026850	Rat
1300113	Bp176	Blood pressure QTL 176	3.9		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	145956084	157309487	Rat
12879872	Cm97	Cardiac mass QTL 97		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	145925360	166177555	Rat
1598877	Bp285	Blood pressure QTL 285	1.5	0.03	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	120538241	165538241	Rat
1578653	Vnigr3	Vascular neointimal growth QTL 3	3.1		artery morphology trait (VT:0002191)	artery neointimal hyperplastic lesion area (CMO:0001414)	3	130656562	169034231	Rat
12879873	Cm96	Cardiac mass QTL 96		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	145925360	166177555	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	98535386	161695835	Rat
12879874	Cm98	Cardiac mass QTL 98		0.005	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	145925360	166177555	Rat
1298068	Bp167	Blood pressure QTL 167		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	141074471	169034231	Rat
12879875	Kidm64	Kidney mass QTL 64		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	145925360	166177555	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	31172320	163586636	Rat
2298477	Eau4	Experimental allergic uveoretinitis QTL 4		0.0011	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	3	137398739	169034231	Rat
8552791	Vie2	Viral induced encephalitis QTL 2	4.1		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	3	145956084	169034231	Rat
61335	Bp20	Blood pressure QTL 20	3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	141339236	155617360	Rat
1581568	Rf53	Renal function QTL 53			urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	3	56395968	161299569	Rat
2317883	Alcrsp26	Alcohol response QTL 26	1.8	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	3	145526770	169034231	Rat
1578754	Stresp16	Stress response QTL 16	4	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	3	112681431	157681431	Rat
1331726	Bp208	Blood pressure QTL 208	3.129		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	141339013	162184794	Rat
1598854	Memor10	Memory QTL 10	2		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	3	145956084	161299569	Rat
9589106	Insul23	Insulin level QTL 23	13.86	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	3	131635904	169034231	Rat
10755461	Coatc16	Coat color QTL 16			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	3	122438700	167438700	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	59242096	157323038	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	43827364	169034231	Rat
2303620	Vencon4	Ventilatory control QTL 4	3.9		respiration trait (VT:0001943)	tidal volume (CMO:0000222)	3	127162703	168026850	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	94856903	159898684	Rat
1576306	Schws3	Schwannoma susceptibility QTL 3		0.001	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	3	118839124	163839124	Rat
619618	Rf3	Renal disease susceptibility QTL 3	6.5	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate to body weight ratio (CMO:0001270)	3	107693393	152693393	Rat
1300159	Kidm4	Kidney mass QTL 4	3.83		kidney mass (VT:0002707)	right kidney wet weight to body weight ratio (CMO:0001953)	3	121056165	157309487	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	41874578	155617519	Rat
2312659	Slep7	Serum leptin concentration QTL 7		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	3	98535255	168026850	Rat
631673	Iddm13	Insulin dependent diabetes mellitus QTL 13	1.3	0.663	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	3	130193298	161695983	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	41874578	155617519	Rat
1578666	Vnigr1	Vascular neointimal growth QTL 1	4.6		artery morphology trait (VT:0002191)	artery lumen area (CMO:0001409)	3	149040888	168026850	Rat
1578656	Vnigr2	Vascular neointimal growth QTL 2	4.2		artery morphology trait (VT:0002191)	lesioned artery residual lumen area (CMO:0001417)	3	130656562	169034231	Rat
8552952	Pigfal13	Plasma insulin-like growth factor 1 level QTL 13			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	3	138799500	169034231	Rat
12879871	Am7	Aortic mass QTL 7		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	145925360	166177555	Rat
631541	Bp81	Blood pressure QTL 81	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	124122556	169034231	Rat
2312670	Bw94	Body weight QTL 94		0.01	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	3	98535255	168026850	Rat

RH134062

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	149,557,944 - 149,558,163 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	156,899,052 - 156,899,270	NCBI	Rnor6.0
Rnor_5.0	3	163,126,143 - 163,126,361	UniSTS	Rnor5.0
RGSC_v3.4	3	151,702,558 - 151,702,776	UniSTS	RGSC3.4
Celera	3	148,230,523 - 148,230,741	UniSTS
RH 3.4 Map	3	1369.1	UniSTS
Cytogenetic Map	3	q42	UniSTS

MARC_23321-23322:1024689677:5

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	149,556,395 - 149,556,907 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	156,897,503 - 156,898,014	NCBI	Rnor6.0
Rnor_5.0	3	163,124,594 - 163,125,105	UniSTS	Rnor5.0
RGSC_v3.4	3	151,701,009 - 151,701,520	UniSTS	RGSC3.4
Celera	3	148,228,974 - 148,229,485	UniSTS
Cytogenetic Map	3	q42	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001014184	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434376	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434377	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434378	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434379	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_197777	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235487	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235489	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235490	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235491	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235493	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235494	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591931	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591932	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105514	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105515	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105516	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105517	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105519	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105521	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284190	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284192	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284193	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284194	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284195	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284196	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284197	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284198	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010064666	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010064667	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010064668	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC128986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC089878	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000022403 ⟹ ENSRNOP00000022403

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	149,534,051 - 149,558,327 (+)	Ensembl
Rnor_6.0 Ensembl	3	156,886,454 - 156,899,436 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095845 ⟹ ENSRNOP00000096250

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	149,534,051 - 149,558,327 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111332 ⟹ ENSRNOP00000081644

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	149,534,051 - 149,558,327 (+)	Ensembl

RefSeq Acc Id:

NM_001014184 ⟹ NP_001014206

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	169,965,050 - 169,978,034 (+)	NCBI
mRatBN7.2	3	149,545,347 - 149,558,331 (+)	NCBI
Rnor_6.0	3	156,886,454 - 156,899,438 (+)	NCBI
Rnor_5.0	3	163,102,102 - 163,126,692 (+)	NCBI
RGSC_v3.4	3	151,689,960 - 151,702,944 (+)	RGD
Celera	3	148,217,925 - 148,230,909 (+)	RGD

Sequence:

show sequence

CCAGGGTTGGCCAGCAGCAGCCATGAACTATGTGGGGCAGCTGGCAGAGACAGTGTTTGGAACAGTTAAGGAGCTATACAGGGGCCTGAACCCAGCCACACTGAGCGGCGGCATTGACGTGCTGGTGG
TCAAGCAGGTGGATGGCTCCTTCCGATGCTCACCCTTCCATGTGCGGTTCGGCAAGCTGGGTGTCCTGCGGTCACGGGAGAAGGTGGTGGACATCGAGATCAATGGAGAGCCTGTGGACTTGCACATG
AAGTTGGGGGACAGTGGCGAGGCCTTCTTTGTCCAGGAGCTGGACAGTGATGAGGAAGATGTGCCTCCTCGACTGTGCACCTCACCCATCCCGTGGGGAGGCCTGTCAGGCTTTCCCTCAGACTCCCA
GCTGGGCACAGCGAGCGAGCCTGAGGGCCTCGTCCTTACGGGGCGGAGAAAGAGGCGGCGCAGGAGGAAACCCAGGCGCAGGGAGGATGCGGCGGACTCCAGTTCTGAAGAGCTGGAGGCAGGTGCCG
AGAGTGAGCTGACCTTGCTGGAAAAGCCAATGCCAGAGTCCCCAAGTGCTTGGAAGGAAGAGGAGCCCTCATCGCAGCCTAAAGACATCTACCCCTACTCTGATGGCGAGTGTACGCCCCAGGCCAAC
CTTTCATCTGCTGACCTAATGTCCCCTAAGAGTGACTCAGAACTAGAGCTGCGGCCCTTGGAGCCCAGTCCTCTGAGGGCTGAGTCTCATATGCAGTGGGCCTGGGGGAGGCTGCCTAAGGTGGCGAA
AGCTGAGCATCCTGAGTTCTCGTTGGTCCTTGAAAGTATGGCTGAGGCAATCTGTGCTCTTCCTGGGGAACCTAGCCCTTCCTCTATGGCTGGCGTGGACACTTTGAGATCCCCAGCGCTGCAACCAG
GAGTCAGGGAAGATATGTTTCATCCTGATGTGGAGGCATATCGTGAGGAAACTCCCATGGATTCTCCTCTTGCTGCCCCAGAGAGTAAGGAAACCAAGACTCAGAACCCCAGGGGTACAGGACACCCT
CCTGCCACGAAATCATGGAGCTGGACCACTCCAGAGAGCCACACGCCCTCTGGACGTACAGAAGTCTCCAGAGGAAGAGCTTCCCTGAAGAGAAGCCAGCACCTGGGCCCAAGTGATATCTACCTGGA
TGATCTGCCCTCCCTGGACTCTGAGAATGTGGCCCTCTATTTCCCTAAGAGTGACTGTGGGATGGGGGCCAGGAGGTGGAGCGAGCCCAGCAACCAGAAGCTGCTGGAGAACCCCAGCCGTGAGCACA
CAGCAGAGTGCACTCTGGACTCCGTGGACAGAATAGAATTGTCCCTCTGTGGTGGACTGGCCGACACTCGCGATATCTCCCTGGAGAAGTTCACCCAGCACATGGTCTCCTACGAGGACCTCACTAAG
AACCCCGGGCTCCTGGATGACCCAAACCTCGTGGTGAAAATTAACGAGAAGCATTATAACTGGGCTGTGGCTGCCCCCATGATTCTTTCTCTGCAAGCCTTCCAGAAGAACTTACCTGAGAGCACTGT
GGACAAGCTTCAAAAGGAGAAGATGCCCCGGAAAGGTGGGCGATGGTGGTTTTCCTGGAGACGCAGGGACTTCCCAGCTGAGGAGCGCAGTGCCCAGAGGGAGAAAGCAGCAACCAGGAAACAGCAGG
GAGAGAAGACAGAGGTCCTAAGCAGTGATGACGATGTCCCAGATAGCCCTGTGATCCTCGAAGTGCCCCCACTGCCATCCTCCACTCCGGGCTATGTCCCTACCTACAAGAAGTCTCTTCGTCTCTCT
TCCAATCAGATCCGGTGTCTAAACCTGAATGAAGGAGCTAACGATGTGGTCTTCAGCGTGACTACCCAGTACCAAGGCACCTGCCGTTGCAAAGCCACCATCTACCTGTGGAACTGGGATGACAAGGT
GGTCATCTCTGACATAGACGGCACCATCACCAAGTCGGATGCTCTGGGCCACATTCTGCCCCAGCTGGGGAAAGACTGGACACACCAGGGCATTACTAGTCTCTACCACAAAATCCATCTAAATGGGT
ACAAGTTCCTGTACTGCTCTGCACGGGCTATCGGCATGGCTCACCTCACCAAGGGGTACCTGCAGTGGGTGAGCGAGCACGGCTGCGGCCTCCCTAAGGGCCCCATCCTGCTGTCTCCCAGCAGCCTC
TTCTCCGCCCTCCACAGGGAAGTAATCGAGAAGAAGCCAGAGGTGTTCAAGGTTGCCTGCCTGAGTGATATCCAGCAGCTGTTTCTGCCCCAAAGACAGCCTTTCTATGCCGCGTTTGGGAACAGGCC
TAACGATGTTTTTGCCTACAGGCAGGTGGGCCTCCCTGAGTCTCGAATCTTCACAGTCAACCCCCGGGGAGAGCTCATCCAAGAGCTCATAAAGAACCACAAATCCACGTACCAGCGGCTTGGAGAGG
TGGTGGAGCTTCTCTTCCCGCCCGTGGTGCGCGGCCCCAGCACAGACCTGGCCAACCCTGAATACAGCAACCTCTGCTATTGGCGGAAGCCACTGCCGTGTGTGGACTTTGACACCCTGGTTTGAGCT
TGCCCTGACGGTTCTCCTTGGCCTGACCCAGGACTGATGGAGTACTTAGGACAGTAGGGGTCAGAAGATGCGTGCCGTGGGCCAATCCAACAAAGGGCTGCAAGTTGACTGGCAGCCTCCGCTACCGC
CACCTTGAAACACAAATGGCCGTGTTCGTCAGTTTGACCGCTCGGTACCAGGGCACTGGGTTTGAAGAACTGGAACAAGATGGCATCTGACAGAGATGGCACCGAATGAGGCCCAGGTGGCTGTGGGA
GCATGGGGAGTACTCAGGGACCCACCTCTCTATCAGGAGTCAGGTAGCTGTCCCAGGCCTCAGTACAGCCCTGACCTCCAGCTATTAAACGTGTCACTAGACTCTTGCAGGGTTCTCTGGCTCCTAGG
CCATTGGTTCTCAATCTGTGGGTCGCAACCCCTTCGGAGGTCGAATGACCCTTTCATGGGGGTTTCATATCAGATATCCTGTTTATCAGATATTTACATTATGATTCAAAACTATAGTTATGAAGTAG
CAGTGAAAATAATTGTATTTACAACCATGAGGAACAGTATTAAAAAGTCACAGCATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006235487 ⟹ XP_006235549

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	169,958,330 - 169,978,034 (+)	NCBI
mRatBN7.2	3	149,540,638 - 149,558,334 (+)	NCBI
Rnor_6.0	3	156,881,729 - 156,899,601 (+)	NCBI
Rnor_5.0	3	163,102,102 - 163,126,692 (+)	NCBI

Sequence:

show sequence

GGGTGTGGTTGGGAACGGGTCAGAGCCCCTAAGTCTGGTGCTCCCCAGTCTCCATAGGAAAAAAGGAGCCCTTGAGTGTGAACACGGGACGGGGGCGGGGTCTTTTCGAAGTAAGGGGTGGAGCCTGA
ACTGACGGTGACAGTGAAAGCCGCACCTGGTTGGTGGAAGGAGTGGAGCCCGGATCTCCCGGGTCCCAGAGGAAGCGGAAGTGCTGGGATCTGGACACTCACCTGTGGAACCTCTGCATACAGGGTTC
CGGACGTGAGTCACACAGACCTGGACTTGAACCTCAGGTTCCTTCTTTCATAGGCGTGAGACCTTGGGCAAGTCACTCCACCTCCCCAAGCTTCACCTGGTTCGTCTGTAAACAGGAATAATAGCAGC
AGCTCTGGCAGCCTTTCGAGGTTGTCCTGAGGATTGGATGAGCCATGCCCATGGAGGGCTCATGGGCGTCACAATGTGGAGATTGGCGGTAGGAGAAGTCAGCCGGCTGCCCAAGGGTCCCACTGTAG
GTTTGTGGGCCAGCCACAGCTAGTAGGCCCAGGTCTTCTGGAGATCCTCCCATCCCGCGGCTGCTGCCTCTCTTTAAGCACGTTCCCTTTCTGAGGGCTGGACAACGTAAGCTTGGACATCCCAGGGT
TGGCCAGCAGCAGCCATGAACTATGTGGGGCAGCTGGCAGAGACAGTGTTTGGAACAGTTAAGGAGCTATACAGGGGCCTGAACCCAGCCACACTGAGCGGCGGCATTGACGTGCTGGTGGTCAAGCA
GGTGGATGGCTCCTTCCGATGCTCACCCTTCCATGTGCGGTTCGGCAAGCTGGGTGTCCTGCGGTCACGGGAGAAGGTGGTGGACATCGAGATCAATGGAGAGCCTGTGGACTTGCACATGAAGTTGG
GGGACAGTGGCGAGGCCTTCTTTGTCCAGGAGCTGGACAGTGATGAGGAAGATGTGCCTCCTCGACTGTGCACCTCACCCATCCCGTGGGGAGGCCTGTCAGGCTTTCCCTCAGACTCCCAGCTGGGC
ACAGCGAGCGAGCCTGAGGGCCTCGTCCTTACGGGGCGGAGAAAGAGGCGGCGCAGGAGGAAACCCAGGCGCAGGGAGGATGCGGCGGACTCCAGTTCTGAAGAGCTGGAGGCAGGTGCCGAGAGTGA
GCTGACCTTGCTGGAAAAGCCAATGCCAGAGTCCCCAAGTGCTTGGAAGGAAGAGGAGCCCTCATCGCAGCCTAAAGACATCTACCCCTACTCTGATGGCGAGTGTACGCCCCAGGCCAACCTTTCAT
CTGCTGACCTAATGTCCCCTAAGAGTGACTCAGAACTAGAGCTGCGGCCCTTGGAGCCCAGTCCTCTGAGGGCTGAGTCTCATATGCAGTGGGCCTGGGGGAGGCTGCCTAAGGTGGCGAAAGCTGAG
CATCCTGAGTTCTCGTTGGTCCTTGAAAGTATGGCTGAGGCAATCTGTGCTCTTCCTGGGGAACCTAGCCCTTCCTCTATGGCTGGCGTGGACACTTTGAGATCCCCAGCGCTGCAACCAGGAGTCAG
GGAAGATATGTTTCATCCTGATGTGGAGGCATATCGTGAGGAAACTCCCATGGATTCTCCTCTTGCTGCCCCAGAGAGTAAGGAAACCAAGACTCAGAACCCCAGGGGTACAGGACACCCTCCTGCCA
CGAAATCATGGAGCTGGACCACTCCAGAGAGCCACACGCCCTCTGGACGTACAGAAGTCTCCAGAGGAAGAGCTTCCCTGAAGAGAAGCCAGCACCTGGGCCCAAGTGATATCTACCTGGATGATCTG
CCCTCCCTGGACTCTGAGAATGTGGCCCTCTATTTCCCTAAGAGTGACTGTGGGATGGGGGCCAGGAGGTGGAGCGAGCCCAGCAACCAGAAGCTGCTGGAGAACCCCAGCCGTGAGCACACAGCAGA
GTGCACTCTGGACTCCGTGGACAGAATAGAATTGTCCCTCTGTGGTGGACTGGCCGACACTCGCGATATCTCCCTGGAGAAGTTCACCCAGCACATGGTCTCCTACGAGGACCTCACTAAGAACCCCG
GGCTCCTGGATGACCCAAACCTCGTGGTGAAAATTAACGAGAAGCATTATAACTGGGCTGTGGCTGCCCCCATGATTCTTTCTCTGCAAGCCTTCCAGAAGAACTTACCTGAGAGCACTGTGGACAAG
CTTCAAAAGGAGAAGATGCCCCGGAAAGGTGGGCGATGGTGGTTTTCCTGGAGACGCAGGGACTTCCCAGCTGAGGAGCGCAGTGCCCAGAGGGAGAAAGCAGCAACCAGGAAACAGCAGGGAGAGAA
GACAGAGGTCCTAAGCAGTGATGACGATGTCCCAGATAGCCCTGTGATCCTCGAAGTGCCCCCACTGCCATCCTCCACTCCGGGCTATGTCCCTACCTACAAGAAGTCTCTTCGTCTCTCTTCCAATC
AGATCCGGTGTCTAAACCTGAATGAAGGAGCTAACGATGTGGTCTTCAGCGTGACTACCCAGTACCAAGGCACCTGCCGTTGCAAAGCCACCATCTACCTGTGGAACTGGGATGACAAGGTGGTCATC
TCTGACATAGACGGCACCATCACCAAGTCGGATGCTCTGGGCCACATTCTGCCCCAGCTGGGGAAAGACTGGACACACCAGGGCATTACTAGTCTCTACCACAAAATCCATCTAAATGGGTACAAGTT
CCTGTACTGCTCTGCACGGGCTATCGGCATGGCTCACCTCACCAAGGGGTACCTGCAGTGGGTGAGCGAGCACGGCTGCGGCCTCCCTAAGGGCCCCATCCTGCTGTCTCCCAGCAGCCTCTTCTCCG
CCCTCCACAGGGAAGTAATCGAGAAGAAGCCAGAGGTGTTCAAGGTTGCCTGCCTGAGTGATATCCAGCAGCTGTTTCTGCCCCAAAGACAGCCTTTCTATGCCGCGTTTGGGAACAGGCCTAACGAT
GTTTTTGCCTACAGGCAGGTGGGCCTCCCTGAGTCTCGAATCTTCACAGTCAACCCCCGGGGAGAGCTCATCCAAGAGCTCATAAAGAACCACAAATCCACGTACCAGCGGCTTGGAGAGGTGGTGGA
GCTTCTCTTCCCGCCCGTGGTGCGCGGCCCCAGCACAGACCTGGCCAACCCTGAATACAGCAACCTCTGCTATTGGCGGAAGCCACTGCCGTGTGTGGACTTTGACACCCTGGTTTGAGCTTGCCCTG
ACGGTTCTCCTTGGCCTGACCCAGGACTGATGGAGTACTTAGGACAGTAGGGGTCAGAAGATGCGTGCCGTGGGCCAATCCAACAAAGGGCTGCAAGTTGACTGGCAGCCTCCGCTACCGCCACCTTG
AAACACAAATGGCCGTGTTCGTCAGTTTGACCGCTCGGTACCAGGGCACTGGGTTTGAAGAACTGGAACAAGATGGCATCTGACAGAGATGGCACCGAATGAGGCCCAGGTGGCTGTGGGAGCATGGG
GAGTACTCAGGGACCCACCTCTCTATCAGGAGTCAGGTAGCTGTCCCAGGCCTCAGTACAGCCCTGACCTCCAGCTATTAAACGTGTCACTAGACTCTTGCAGGGTTCTCTGGCTCCTAGGCCATTGG
TTCTCAATCTGTGGGTCGCAACCCCTTCGGAGGTCGAATGACCCTTTCATGGGGGTTTCATATCAGATATCCTGTTTATCAGATATTTACATTATGATTCAAAACTATAGTTATGAAGTAGCAGTGAA
AATAATTGTATTTACAACCATGAGGAACAGTATTAAAAAGTCACAGCATTAAGAAGGTTGAGAACCACTGTCCTTGGGGTATCATCTGGGAATACTACGATCCCACGGGTTTTGGGAGCCCAGACTAC
CCTCCTTAGCCAAGTGTCTCTGTGATCCCGTCTCTCTGCTCATAGGTCTTGATCTAAATATCTAAGATCAGTTCATCTACCTTGAAA

hide sequence

RefSeq Acc Id:

XM_006235493 ⟹ XP_006235555

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	169,953,555 - 169,978,034 (+)	NCBI
mRatBN7.2	3	149,533,726 - 149,558,334 (+)	NCBI
Rnor_6.0	3	156,874,805 - 156,899,601 (+)	NCBI
Rnor_5.0	3	163,102,102 - 163,126,692 (+)	NCBI

Sequence:

show sequence

TCTAAATTATATTTCTGGGGAAGGGTGTGAGTTAGAGATGGGAGTTCTTTGTTCTGTCTTTCCTGGGCACAAAGGTTCCACCTCCATGAAAGAAAGCGCTGGTTCTTGGTACTTGGACCAGTGTCCTA
AACAGTAAGGAATGCAATGACTCAGCTAGTCACTCAGGGACACTTTGGTGAACAAGGCCACGGGAAGGAAATCATTACAGACAGCTGGACTGTAAAAAGCAAAAATACTCCACACACCAAACTCTACA
AGCCAGTAGAAGCTGAGCGGCCCATGATTCAACAGGCCTGTTTTTGCCACGTGGCTCCCAGCTCATGGTACGTGGCACATAGCCCTGGCTTGCCGCTGGCTGCTCCAAGCACTGCTGGAAAACAGAAC
TGGACCTCGGGAAAGCTATGTGGAGATTGGCGGTAGGAGAAGTCAGCCGGCTGCCCAAGGGTCCCACTGTAGGTTTGTGGGCCAGCCACAGCTAGTAGGCCCAGGTCTTCTGGAGATCCTCCCATCCC
GCGGCTGCTGCCTCTCTTTAAGCACGTTCCCTTTCTGAGGGCTGGACAACGTAAGCTTGGACATCCCAGGGTTGGCCAGCAGCAGCCATGAACTATGTGGGGCAGCTGGCAGAGACAGTGTTTGGAAC
AGTTAAGGAGCTATACAGGGGCCTGAACCCAGCCACACTGAGCGGCGGCATTGACGTGCTGGTGGTCAAGCAGGTGGATGGCTCCTTCCGATGCTCACCCTTCCATGTGCGGTTCGGCAAGCTGGGTG
TCCTGCGGTCACGGGAGAAGGTGGTGGACATCGAGATCAATGGAGAGCCTGTGGACTTGCACATGAAGTTGGGGGACAGTGGCGAGGCCTTCTTTGTCCAGGAGCTGGACAGTGATGAGGAAGATGTG
CCTCCTCGACTGTGCACCTCACCCATCCCGTGGGGAGGCCTGTCAGGCTTTCCCTCAGACTCCCAGCTGGGCACAGCGAGCGAGCCTGAGGGCCTCGTCCTTACGGGGCGGAGAAAGAGGCGGCGCAG
GAGGAAACCCAGGCGCAGGGAGGATGCGGCGGACTCCAGTTCTGAAGAGCTGGAGGCAGGTGCCGAGAGTGAGCTGACCTTGCTGGAAAAGCCAATGCCAGAGTCCCCAAGTGCTTGGAAGGAAGAGG
AGCCCTCATCGCAGCCTAAAGACATCTACCCCTACTCTGATGGCGAGTGTACGCCCCAGGCCAACCTTTCATCTGCTGACCTAATGTCCCCTAAGAGTGACTCAGAACTAGAGCTGCGGCCCTTGGAG
CCCAGTCCTCTGAGGGCTGAGTCTCATATGCAGTGGGCCTGGGGGAGGCTGCCTAAGGTGGCGAAAGCTGAGCATCCTGAGTTCTCGTTGGTCCTTGAAAGTATGGCTGAGGCAATCTGTGCTCTTCC
TGGGGAACCTAGCCCTTCCTCTATGGCTGGCGTGGACACTTTGAGATCCCCAGCGCTGCAACCAGGAGTCAGGGAAGATATGTTTCATCCTGATGTGGAGGCATATCGTGAGGAAACTCCCATGGATT
CTCCTCTTGCTGCCCCAGAGAGTAAGGAAACCAAGACTCAGAACCCCAGGGGTACAGGACACCCTCCTGCCACGAAATCATGGAGCTGGACCACTCCAGAGAGCCACACGCCCTCTGGACGTACAGAA
GTCTCCAGAGGAAGAGCTTCCCTGAAGAGAAGCCAGCACCTGGGCCCAAGTGATATCTACCTGGATGATCTGCCCTCCCTGGACTCTGAGAATGTGGCCCTCTATTTCCCTAAGAGTGACTGTGGGAT
GGGGGCCAGGAGGTGGAGCGAGCCCAGCAACCAGAAGCTGCTGGAGAACCCCAGCCGTGAGCACACAGCAGAGTGCACTCTGGACTCCGTGGACAGAATAGAATTGTCCCTCTGTGGTGGACTGGCCG
ACACTCGCGATATCTCCCTGGAGAAGTTCACCCAGCACATGGTCTCCTACGAGGACCTCACTAAGAACCCCGGGCTCCTGGATGACCCAAACCTCGTGGTGAAAATTAACGAGAAGCATTATAACTGG
GCTGTGGCTGCCCCCATGATTCTTTCTCTGCAAGCCTTCCAGAAGAACTTACCTGAGAGCACTGTGGACAAGCTTCAAAAGGAGAAGATGCCCCGGAAAGGTGGGCGATGGTGGTTTTCCTGGAGACG
CAGGGACTTCCCAGCTGAGGAGCGCAGTGCCCAGAGGGAGAAAGCAGCAACCAGGAAACAGCAGGGAGAGAAGACAGAGGTCCTAAGCAGTGATGACGATGTCCCAGATAGCCCTGTGATCCTCGAAG
TGCCCCCACTGCCATCCTCCACTCCGGGCTATGTCCCTACCTACAAGAAGTCTCTTCGTCTCTCTTCCAATCAGATCCGGTGTCTAAACCTGAATGAAGGAGCTAACGATGTGGTCTTCAGCGTGACT
ACCCAGTACCAAGGCACCTGCCGTTGCAAAGCCACCATCTACCTGTGGAACTGGGATGACAAGGTGGTCATCTCTGACATAGACGGCACCATCACCAAGTCGGATGCTCTGGGCCACATTCTGCCCCA
GCTGGGGAAAGACTGGACACACCAGGGCATTACTAGTCTCTACCACAAAATCCATCTAAATGGGTACAAGTTCCTGTACTGCTCTGCACGGGCTATCGGCATGGCTCACCTCACCAAGGGGTACCTGC
AGTGGGTGAGCGAGCACGGCTGCGGCCTCCCTAAGGGCCCCATCCTGCTGTCTCCCAGCAGCCTCTTCTCCGCCCTCCACAGGGAAGTAATCGAGAAGAAGCCAGAGGTGTTCAAGGTTGCCTGCCTG
AGTGATATCCAGCAGCTGTTTCTGCCCCAAAGACAGCCTTTCTATGCCGCGTTTGGGAACAGGCCTAACGATGTTTTTGCCTACAGGCAGGTGGGCCTCCCTGAGTCTCGAATCTTCACAGTCAACCC
CCGGGGAGAGCTCATCCAAGAGCTCATAAAGAACCACAAATCCACGTACCAGCGGCTTGGAGAGGTGGTGGAGCTTCTCTTCCCGCCCGTGGTGCGCGGCCCCAGCACAGACCTGGCCAACCCTGAAT
ACAGCAACCTCTGCTATTGGCGGAAGCCACTGCCGTGTGTGGACTTTGACACCCTGGTTTGAGCTTGCCCTGACGGTTCTCCTTGGCCTGACCCAGGACTGATGGAGTACTTAGGACAGTAGGGGTCA
GAAGATGCGTGCCGTGGGCCAATCCAACAAAGGGCTGCAAGTTGACTGGCAGCCTCCGCTACCGCCACCTTGAAACACAAATGGCCGTGTTCGTCAGTTTGACCGCTCGGTACCAGGGCACTGGGTTT
GAAGAACTGGAACAAGATGGCATCTGACAGAGATGGCACCGAATGAGGCCCAGGTGGCTGTGGGAGCATGGGGAGTACTCAGGGACCCACCTCTCTATCAGGAGTCAGGTAGCTGTCCCAGGCCTCAG
TACAGCCCTGACCTCCAGCTATTAAACGTGTCACTAGACTCTTGCAGGGTTCTCTGGCTCCTAGGCCATTGGTTCTCAATCTGTGGGTCGCAACCCCTTCGGAGGTCGAATGACCCTTTCATGGGGGT
TTCATATCAGATATCCTGTTTATCAGATATTTACATTATGATTCAAAACTATAGTTATGAAGTAGCAGTGAAAATAATTGTATTTACAACCATGAGGAACAGTATTAAAAAGTCACAGCATTAAGAAG
GTTGAGAACCACTGTCCTTGGGGTATCATCTGGGAATACTACGATCCCACGGGTTTTGGGAGCCCAGACTACCCTCCTTAGCCAAGTGTCTCTGTGATCCCGTCTCTCTGCTCATAGGTCTTGATCTA
AATATCTAAGATCAGTTCATCTACCTTGAAA

hide sequence

RefSeq Acc Id:

XM_039105514 ⟹ XP_038961442

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	169,958,326 - 169,978,034 (+)	NCBI
mRatBN7.2	3	149,540,630 - 149,558,494 (+)	NCBI

RefSeq Acc Id:

XM_039105515 ⟹ XP_038961443

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	169,953,548 - 169,978,034 (+)	NCBI
mRatBN7.2	3	149,533,719 - 149,558,494 (+)	NCBI

RefSeq Acc Id:

XM_039105516 ⟹ XP_038961444

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	169,958,326 - 169,978,034 (+)	NCBI
mRatBN7.2	3	149,540,630 - 149,558,494 (+)	NCBI

RefSeq Acc Id:

XM_039105517 ⟹ XP_038961445

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	169,957,153 - 169,978,034 (+)	NCBI
mRatBN7.2	3	149,537,457 - 149,558,494 (+)	NCBI

RefSeq Acc Id:

XM_039105519 ⟹ XP_038961447

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	169,953,548 - 169,978,034 (+)	NCBI
mRatBN7.2	3	149,533,719 - 149,558,494 (+)	NCBI

RefSeq Acc Id:

XM_039105521 ⟹ XP_038961449

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	169,953,548 - 169,978,034 (+)	NCBI
mRatBN7.2	3	149,533,719 - 149,558,494 (+)	NCBI

RefSeq Acc Id:

XM_063284190 ⟹ XP_063140260

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	169,953,548 - 169,978,034 (+)	NCBI

RefSeq Acc Id:

XM_063284192 ⟹ XP_063140262

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	169,957,153 - 169,978,034 (+)	NCBI

RefSeq Acc Id:

XM_063284193 ⟹ XP_063140263

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	169,953,555 - 169,978,034 (+)	NCBI

RefSeq Acc Id:

XM_063284194 ⟹ XP_063140264

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	169,958,330 - 169,978,034 (+)	NCBI

RefSeq Acc Id:

XM_063284195 ⟹ XP_063140265

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	169,957,153 - 169,978,034 (+)	NCBI

RefSeq Acc Id:

XM_063284196 ⟹ XP_063140266

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	169,957,153 - 169,978,034 (+)	NCBI

RefSeq Acc Id:

XM_063284197 ⟹ XP_063140267

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	169,953,555 - 169,978,034 (+)	NCBI

RefSeq Acc Id:

XM_063284198 ⟹ XP_063140268

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	169,958,316 - 169,972,903 (+)	NCBI

RefSeq Acc Id:

XR_010064666

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	169,953,524 - 169,976,686 (+)	NCBI

RefSeq Acc Id:

XR_010064667

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	169,953,517 - 169,976,133 (+)	NCBI

RefSeq Acc Id:

XR_010064668

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	169,953,479 - 169,975,876 (+)	NCBI


Protein RefSeqs	NP_001014206	(Get FASTA)	NCBI Sequence Viewer
	NP_001421305	(Get FASTA)	NCBI Sequence Viewer
	NP_001421306	(Get FASTA)	NCBI Sequence Viewer
	NP_001421307	(Get FASTA)	NCBI Sequence Viewer
	NP_001421308	(Get FASTA)	NCBI Sequence Viewer
	XP_006235549	(Get FASTA)	NCBI Sequence Viewer
	XP_006235555	(Get FASTA)	NCBI Sequence Viewer
	XP_038961442	(Get FASTA)	NCBI Sequence Viewer
	XP_038961443	(Get FASTA)	NCBI Sequence Viewer
	XP_038961444	(Get FASTA)	NCBI Sequence Viewer
	XP_038961445	(Get FASTA)	NCBI Sequence Viewer
	XP_038961447	(Get FASTA)	NCBI Sequence Viewer
	XP_038961449	(Get FASTA)	NCBI Sequence Viewer
	XP_063140260	(Get FASTA)	NCBI Sequence Viewer
	XP_063140262	(Get FASTA)	NCBI Sequence Viewer
	XP_063140263	(Get FASTA)	NCBI Sequence Viewer
	XP_063140264	(Get FASTA)	NCBI Sequence Viewer
	XP_063140265	(Get FASTA)	NCBI Sequence Viewer
	XP_063140266	(Get FASTA)	NCBI Sequence Viewer
	XP_063140267	(Get FASTA)	NCBI Sequence Viewer
	XP_063140268	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH89878	(Get FASTA)	NCBI Sequence Viewer
	EDL96610	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000022403.6
	ENSRNOP00000081644.1
	ENSRNOP00000096250
	ENSRNOP00000096250.1

RefSeq Acc Id:

NP_001014206 ⟸ NM_001014184

- UniProtKB:

Q5EBA5 (UniProtKB/TrEMBL), F1LMI0 (UniProtKB/TrEMBL), A0A8J8YGA4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MNYVGQLAETVFGTVKELYRGLNPATLSGGIDVLVVKQVDGSFRCSPFHVRFGKLGVLRSREKVVDIEINGEPVDLHMKLGDSGEAFFVQELDSDEEDVPPRLCTSPIPWGGLSGFPSDSQLGTASEP
EGLVLTGRRKRRRRRKPRRREDAADSSSEELEAGAESELTLLEKPMPESPSAWKEEEPSSQPKDIYPYSDGECTPQANLSSADLMSPKSDSELELRPLEPSPLRAESHMQWAWGRLPKVAKAEHPEFS
LVLESMAEAICALPGEPSPSSMAGVDTLRSPALQPGVREDMFHPDVEAYREETPMDSPLAAPESKETKTQNPRGTGHPPATKSWSWTTPESHTPSGRTEVSRGRASLKRSQHLGPSDIYLDDLPSLDS
ENVALYFPKSDCGMGARRWSEPSNQKLLENPSREHTAECTLDSVDRIELSLCGGLADTRDISLEKFTQHMVSYEDLTKNPGLLDDPNLVVKINEKHYNWAVAAPMILSLQAFQKNLPESTVDKLQKEK
MPRKGGRWWFSWRRRDFPAEERSAQREKAATRKQQGEKTEVLSSDDDVPDSPVILEVPPLPSSTPGYVPTYKKSLRLSSNQIRCLNLNEGANDVVFSVTTQYQGTCRCKATIYLWNWDDKVVISDIDG
TITKSDALGHILPQLGKDWTHQGITSLYHKIHLNGYKFLYCSARAIGMAHLTKGYLQWVSEHGCGLPKGPILLSPSSLFSALHREVIEKKPEVFKVACLSDIQQLFLPQRQPFYAAFGNRPNDVFAYR
QVGLPESRIFTVNPRGELIQELIKNHKSTYQRLGEVVELLFPPVVRGPSTDLANPEYSNLCYWRKPLPCVDFDTLV

hide sequence

RefSeq Acc Id:

XP_006235555 ⟸ XM_006235493

- Peptide Label:

isoform X2

- Sequence:

show sequence

MNYVGQLAETVFGTVKELYRGLNPATLSGGIDVLVVKQVDGSFRCSPFHVRFGKLGVLRSREKVVDIEINGEPVDLHMKLGDSGEAFFVQELDSDEEDVPPRLCTSPIPWGGLSGFPSDSQLGTASEP
EGLVLTGRRKRRRRRKPRRREDAADSSSEELEAGAESELTLLEKPMPESPSAWKEEEPSSQPKDIYPYSDGECTPQANLSSADLMSPKSDSELELRPLEPSPLRAESHMQWAWGRLPKVAKAEHPEFS
LVLESMAEAICALPGEPSPSSMAGVDTLRSPALQPGVREDMFHPDVEAYREETPMDSPLAAPESKETKTQNPRGTGHPPATKSWSWTTPESHTPSGRTEVSRGRASLKRSQHLGPSDIYLDDLPSLDS
ENVALYFPKSDCGMGARRWSEPSNQKLLENPSREHTAECTLDSVDRIELSLCGGLADTRDISLEKFTQHMVSYEDLTKNPGLLDDPNLVVKINEKHYNWAVAAPMILSLQAFQKNLPESTVDKLQKEK
MPRKGGRWWFSWRRRDFPAEERSAQREKAATRKQQGEKTEVLSSDDDVPDSPVILEVPPLPSSTPGYVPTYKKSLRLSSNQIRCLNLNEGANDVVFSVTTQYQGTCRCKATIYLWNWDDKVVISDIDG
TITKSDALGHILPQLGKDWTHQGITSLYHKIHLNGYKFLYCSARAIGMAHLTKGYLQWVSEHGCGLPKGPILLSPSSLFSALHREVIEKKPEVFKVACLSDIQQLFLPQRQPFYAAFGNRPNDVFAYR
QVGLPESRIFTVNPRGELIQELIKNHKSTYQRLGEVVELLFPPVVRGPSTDLANPEYSNLCYWRKPLPCVDFDTLV

hide sequence

RefSeq Acc Id:

XP_006235549 ⟸ XM_006235487

- Peptide Label:

isoform X2

- Sequence:

show sequence

MNYVGQLAETVFGTVKELYRGLNPATLSGGIDVLVVKQVDGSFRCSPFHVRFGKLGVLRSREKVVDIEINGEPVDLHMKLGDSGEAFFVQELDSDEEDVPPRLCTSPIPWGGLSGFPSDSQLGTASEP
EGLVLTGRRKRRRRRKPRRREDAADSSSEELEAGAESELTLLEKPMPESPSAWKEEEPSSQPKDIYPYSDGECTPQANLSSADLMSPKSDSELELRPLEPSPLRAESHMQWAWGRLPKVAKAEHPEFS
LVLESMAEAICALPGEPSPSSMAGVDTLRSPALQPGVREDMFHPDVEAYREETPMDSPLAAPESKETKTQNPRGTGHPPATKSWSWTTPESHTPSGRTEVSRGRASLKRSQHLGPSDIYLDDLPSLDS
ENVALYFPKSDCGMGARRWSEPSNQKLLENPSREHTAECTLDSVDRIELSLCGGLADTRDISLEKFTQHMVSYEDLTKNPGLLDDPNLVVKINEKHYNWAVAAPMILSLQAFQKNLPESTVDKLQKEK
MPRKGGRWWFSWRRRDFPAEERSAQREKAATRKQQGEKTEVLSSDDDVPDSPVILEVPPLPSSTPGYVPTYKKSLRLSSNQIRCLNLNEGANDVVFSVTTQYQGTCRCKATIYLWNWDDKVVISDIDG
TITKSDALGHILPQLGKDWTHQGITSLYHKIHLNGYKFLYCSARAIGMAHLTKGYLQWVSEHGCGLPKGPILLSPSSLFSALHREVIEKKPEVFKVACLSDIQQLFLPQRQPFYAAFGNRPNDVFAYR
QVGLPESRIFTVNPRGELIQELIKNHKSTYQRLGEVVELLFPPVVRGPSTDLANPEYSNLCYWRKPLPCVDFDTLV

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Ensembl Acc Id:

ENSRNOP00000022403 ⟸ ENSRNOT00000022403

RefSeq Acc Id:	XP_038961443 ⟸ XM_039105515
- Peptide Label:	isoform X1
- UniProtKB:	A0A8J8YGA4 (UniProtKB/TrEMBL)

Protein Domains

LNS2/PITP

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5EBA5-F1-model_v2	AlphaFold	Q5EBA5	1-844	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-46964	BioCyc
BioCyc Pathway	PWY-7782 [plasmalogen biosynthesis]	BioCyc
	PWY-8052 [2-arachidonoylglycerol biosynthesis]	BioCyc
	PWY-8053 [anandamide biosynthesis II]	BioCyc
	TRIGLSYN-PWY [diacylglycerol and triacylglycerol biosynthesis]	BioCyc
BioCyc Pathway Image	PWY-7782	BioCyc
	PWY-8052	BioCyc
	PWY-8053	BioCyc
	TRIGLSYN-PWY	BioCyc
Ensembl Genes	ENSRNOG00000016636	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000022403.6	UniProtKB/TrEMBL
	ENSRNOT00000095845	ENTREZGENE
	ENSRNOT00000095845.1	UniProtKB/TrEMBL
	ENSRNOT00000111332.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.1000	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7326188	IMAGE-MGC_LOAD
InterPro	HAD-like_sf	UniProtKB/TrEMBL
	HAD_sf	UniProtKB/TrEMBL
	LIPIN	UniProtKB/TrEMBL
	Lipin_mid	UniProtKB/TrEMBL
	Lipin_N	UniProtKB/TrEMBL
	LNS2	UniProtKB/TrEMBL
	LNS2/PITP	UniProtKB/TrEMBL
KEGG Report	rno:362261	UniProtKB/TrEMBL
MGC_CLONE	MGC:109016	IMAGE-MGC_LOAD
NCBI Gene	362261	ENTREZGENE
PANTHER	PHOSPHATIDATE PHOSPHATASE LPIN3	UniProtKB/TrEMBL
	PTHR12181	UniProtKB/TrEMBL
Pfam	Lipin_mid	UniProtKB/TrEMBL
	Lipin_N	UniProtKB/TrEMBL
	LNS2	UniProtKB/TrEMBL
PhenoGen	Lpin3	PhenoGen
RatGTEx	ENSRNOG00000016636	RatGTEx
SMART	LNS2	UniProtKB/TrEMBL
Superfamily-SCOP	HAD-like_dom	UniProtKB/TrEMBL
UniProt	A0A8I6AUU1_RAT	UniProtKB/TrEMBL
	A0A8I6G885_RAT	UniProtKB/TrEMBL
	A0A8J8YGA4	ENTREZGENE, UniProtKB/TrEMBL
	F1LMI0	ENTREZGENE
	Q5EBA5	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	F1LMI0	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-05	Lpin3	lipin 3	LOC362261	similar to lipin 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-19	LOC362261	similar to lipin 3			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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BioCyc Pathways