Mrpl20 (mitochondrial ribosomal protein L20)

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Gene: Mrpl20 (mitochondrial ribosomal protein L20) Rattus norvegicus

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Symbol:

Mrpl20

Name:

mitochondrial ribosomal protein L20

RGD ID:

1588219

Description:

Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in mitochondrion. Predicted to be part of mitochondrial large ribosomal subunit. Predicted to be active in mitochondrial ribosome. Orthologous to human MRPL20 (mitochondrial ribosomal protein L20); INTERACTS WITH acetamide; aconitine; benzo[a]pyrene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

39S ribosomal protein L20, mitochondrial; large ribosomal subunit protein bL20m; LOC680747; similar to mitochondrial ribosomal protein L20

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MRPL20 (mitochondrial ribosomal protein L20)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Mrpl20 (mitochondrial ribosomal protein L20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Mrpl20 (mitochondrial ribosomal protein L20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MRPL20 (mitochondrial ribosomal protein L20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MRPL20 (mitochondrial ribosomal protein L20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Mrpl20 (mitochondrial ribosomal protein L20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MRPL20 (mitochondrial ribosomal protein L20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MRPL20 (mitochondrial ribosomal protein L20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Mrpl20 (mitochondrial ribosomal protein L20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	MRPL20 (mitochondrial ribosomal protein L20)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Mrpl20 (mitochondrial ribosomal protein L20)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	mrpl20 (mitochondrial ribosomal protein L20)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	mrpl-20	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	mRpL20	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	mrpl20	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	171,690,664 - 171,695,728 (+)	NCBI		GRCr8
mRatBN7.2	5	166,408,962 - 166,413,492 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	166,408,962 - 166,413,492 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	169,113,837 - 169,118,373 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	170,935,256 - 170,939,792 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	170,897,787 - 170,902,323 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	173,248,245 - 173,252,775 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	173,248,245 - 173,252,775 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	176,723,859 - 176,728,389 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	172,657,923 - 172,662,453 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	164,609,698 - 164,614,228 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

chromosome 1p36 deletion syndrome (ISO)

congenital myasthenic syndrome 8 (ISO)

dilated cardiomyopathy 1LL (ISO)

Ehlers-Danlos syndrome spondylodysplastic type 2 (ISO)

Goldberg-Shprintzen syndrome (ISO)

idiopathic generalized epilepsy (ISO)

immunodeficiency 16 (ISO)

immunodeficiency 38 (ISO)

Joubert syndrome 25 (ISO)

Neurodevelopmental Disorders (ISO)

Peroxisome Biogenesis Disorder, Complementation Group 7 (ISO)

Shprintzen-Goldberg Craniosynostosis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

(-)-alpha-phellandrene (ISO)

(S)-nicotine (ISO)

1,2-dimethylhydrazine (ISO)

1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

acetamide (EXP)

aconitine (EXP)

alpha-phellandrene (ISO)

aluminium atom (ISO)

aluminium(0) (ISO)

arsenite(3-) (ISO)

aspartame (ISO)

atrazine (ISO)

benzo[a]pyrene (EXP,ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

carbon nanotube (ISO)

chromium(6+) (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

corosolic acid (ISO)

dextran sulfate (ISO)

diazinon (ISO)

Dibutyl phosphate (ISO)

diclofenac (ISO)

disodium selenite (ISO)

ethanol (ISO)

finasteride (EXP)

flutamide (EXP)

folic acid (ISO)

genistein (ISO)

hydrogen peroxide (ISO)

ibuprofen (ISO)

leflunomide (EXP)

lipopolysaccharide (ISO)

monosodium L-glutamate (ISO)

nefazodone (EXP)

nickel atom (ISO)

nicotine (ISO)

nimesulide (EXP)

paracetamol (EXP,ISO)

pirinixic acid (ISO)

quercetin (ISO)

resveratrol (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sulindac (EXP)

thioacetamide (EXP)

thiram (ISO)

tolcapone (EXP)

trimellitic anhydride (ISO)

tungsten (ISO)

tunicamycin (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

translation (IEA)

Cellular Component

mitochondrial large ribosomal subunit (ISO)

mitochondrial ribosome (IBA,ISO)

mitochondrion (ISO)

Molecular Function

protein binding (ISO)

rRNA binding (IEA)

structural constituent of ribosome (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:18614015	PMID:20601428	PMID:22681889	PMID:25278503	PMID:28892042

Genomics

Comparative Map Data

Mrpl20
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	171,690,664 - 171,695,728 (+)	NCBI		GRCr8
mRatBN7.2	5	166,408,962 - 166,413,492 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	166,408,962 - 166,413,492 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	169,113,837 - 169,118,373 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	170,935,256 - 170,939,792 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	170,897,787 - 170,902,323 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	173,248,245 - 173,252,775 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	173,248,245 - 173,252,775 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	176,723,859 - 176,728,389 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	172,657,923 - 172,662,453 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	164,609,698 - 164,614,228 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

MRPL20
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	1,401,909 - 1,407,293 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	1,401,909 - 1,407,293 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	1,337,289 - 1,342,673 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	1,327,159 - 1,332,524 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	1,238,564 - 1,243,981 (+)	NCBI		Celera
Cytogenetic Map	1	p36.33	NCBI
HuRef	1	609,481 - 614,898 (-)	NCBI		HuRef
CHM1_1	1	1,324,690 - 1,330,107 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	833,839 - 839,223 (-)	NCBI		T2T-CHM13v2.0

Mrpl20
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	155,887,335 - 155,893,288 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	155,887,335 - 155,894,432 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	155,802,878 - 155,808,831 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	155,802,878 - 155,809,975 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	155,177,727 - 155,182,938 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	154,647,418 - 154,652,629 (+)	NCBI		MGSCv36	mm8
Celera	4	158,074,686 - 158,080,132 (+)	NCBI		Celera
Cytogenetic Map	4	E2	NCBI
cM Map	4	87.44	NCBI

Mrpl20
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955486	9,417,925 - 9,420,789 (+)	NCBI	ChiLan1.0	ChiLan1.0

MRPL20
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	226,817,684 - 226,823,585 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	225,515,726 - 225,521,152 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	157,984 - 163,411 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	1,358,009 - 1,363,012 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	1,358,009 - 1,363,014 (-)	Ensembl	panpan1.1		panPan2

MRPL20
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	56,553,326 - 56,558,182 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	56,553,331 - 56,558,136 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	56,629,506 - 56,634,365 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	56,755,633 - 56,760,741 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	56,755,638 - 56,760,692 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	56,746,132 - 56,750,989 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	56,638,398 - 56,643,257 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	57,028,682 - 57,033,572 (-)	NCBI		UU_Cfam_GSD_1.0

Mrpl20
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	27,702,757 - 27,705,717 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936737	1,760,236 - 1,761,776 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MRPL20
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	63,670,755 - 63,675,839 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	63,670,750 - 63,675,834 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	58,274,566 - 58,279,667 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MRPL20
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	130,042,502 - 130,047,019 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666054	34,584,210 - 34,588,291 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mrpl20
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624818	8,228,005 - 8,231,009 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624818	8,227,947 - 8,231,006 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Mrpl20
19 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	98
Count of miRNA genes:	86
Interacting mature miRNAs:	91
Transcripts:	ENSRNOT00000025213
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631272	Lanf1	Left ventricular atrial natriuretic factor QTL 1	12		heart left ventricle natriuretic peptide A amount (VT:0010596)	heart left ventricle natriuretic peptide A level (CMO:0002165)	5	151113452	166875058	Rat
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	124965598	166875058	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
631562	Apr2	Acute phase response QTL 2	3.7		blood murinoglobulin 1 amount (VT:0010597)	plasma murinoglobulin 1 level (CMO:0001931)	5	135927956	166875058	Rat
61444	Strs2	Sensitivity to stroke QTL 2	4.7		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	5	135929696	166875058	Rat
634349	Bp139	Blood pressure QTL 139		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	128924607	166875058	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	126424772	166875058	Rat
1549904	Neuinf1	Neuroinflammation QTL 1	3	0	nervous system integrity trait (VT:0010566)	blood T lymphocyte count (CMO:0000110)	5	154828214	166875058	Rat
738018	Anxrr4	Anxiety related response QTL 4	5.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	5	130130159	166875058	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	128506074	166875058	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	131345754	166875058	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	82394392	166664054	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	127798274	166875058	Rat
1641920	Colcs1	Colorectal carcinoma susceptibility QTL 1	2.99	0.0055	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	5	121846814	166846814	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	127798274	166875058	Rat
1331721	Bp210	Blood pressure QTL 210	3.413		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	143069996	166846814	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	128506074	166875058	Rat

Markers in Region

RH133343

Rat Assembly	Chr	Position (strand)	Source	JBrowse
RH 3.4 Map	4	419.82	UniSTS
Cytogenetic Map	5	q36	UniSTS

RH135074

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	166,408,786 - 166,408,980 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	173,248,070 - 173,248,263	NCBI	Rnor6.0
Rnor_5.0	5	176,723,684 - 176,723,877	UniSTS	Rnor5.0
RGSC_v3.4	5	172,657,748 - 172,657,941	UniSTS	RGSC3.4
Celera	5	164,609,523 - 164,609,716	UniSTS
RH 3.4 Map	5	1174.7	UniSTS
Cytogenetic Map	5	q36	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system

circulatory system

endocrine system

exocrine system

hemolymphoid system

hepatobiliary system

integumental system

musculoskeletal system

nervous system

renal system

reproductive system

respiratory system

appendage

High

Medium

141

227

147

250

115

145

Low

Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109428	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288394	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC106940	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC166541	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ224518	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000025213 ⟹ ENSRNOP00000025213

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	166,408,962 - 166,413,492 (+)	Ensembl
Rnor_6.0 Ensembl	5	173,248,245 - 173,252,775 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000116054 ⟹ ENSRNOP00000085470

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	166,409,090 - 166,413,492 (+)	Ensembl

RefSeq Acc Id:

NM_001109428 ⟹ NP_001102898

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	171,691,198 - 171,695,728 (+)	NCBI
mRatBN7.2	5	166,408,962 - 166,413,492 (+)	NCBI
Rnor_6.0	5	173,248,245 - 173,252,775 (+)	NCBI
Rnor_5.0	5	176,723,859 - 176,728,389 (+)	NCBI
RGSC_v3.4	5	172,657,923 - 172,662,453 (+)	RGD
Celera	5	164,609,698 - 164,614,228 (+)	RGD

Sequence:

show sequence

ACTGAACTCAGGGACGAGTCTAGAGGCGACCCGGAAGACAGTGCTTGCACACATCCGTCAGGGC
AGGACTTTCTGACCGTTGACCCGGAAGCGCTTATGGTAGCCCCTCGGGATTCCGGGGTCCCATC
ATGGTCTTCCTTACGACGCGGCTCTGGCTACGGAACCGCCTCACAGACCGCTATTGGCGGGTTC
AGGAGGTGCTGAAACATGCTGGGCATTTTAGGGGAAGGAAGAATCGCTGCTACCGGCTGGCCGT
CAGGGCGGTGACCAGAGCCTTCGTTAAGTGTACGAACTCCCGCAGACTTAAGAAGCGGAACCTG
AGGACCCTCTGGATTAATCGAATTACAGCTGCCTCCCAGGAACATGGCTTACAGTACCCAGCAT
TTATTCTCAACTTAGTTAAGTGCCAGGTGGAGCTCAACAGGAAAGTACTTGTGGACCTGGCCAT
CTATGAACCAAAGACGTTTAAATCTTTGGCTGCTTTGGCTAAGAGGAGGCAGCAGGAAGGATTT
GCTGCAGCTTTGGGGGATGGAAAGGAGCCTGAAGGTATCTTTTCCAGAGTGGTACAATACCACT
GAAGGCTGCAGTGCTATAGAAACTGTTAAAAACAAGATAGGACCAAAAGGATTGTCACCAGTAA
GTCTGATTTGTATTTATTTACATTTTAGCAACAGGCCTGAGACAACAGGTGTTTACTCAGTGAC
ACAGCCCCAAACTGTCCTGTAAAGAATGTACAAATAAAGTTTTTGCAGTGTTGAA

hide sequence

RefSeq Acc Id:

XM_063288394 ⟹ XP_063144464

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	171,690,664 - 171,695,728 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102898	(Get FASTA)	NCBI Sequence Viewer
	XP_063144464	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI66541	(Get FASTA)	NCBI Sequence Viewer
	EDL81326	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000025213.4
	ENSRNOP00000085470.1

RefSeq Acc Id:	NP_001102898 ⟸ NM_001109428
- UniProtKB:	B2GV62 (UniProtKB/TrEMBL), A6IUS6 (UniProtKB/TrEMBL), F7ELM1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVFLTTRLWLRNRLTDRYWRVQEVLKHAGHFRGRKNRCYRLAVRAVTRAFVKCTNSRRLKKRNL RTLWINRITAASQEHGLQYPAFILNLVKCQVELNRKVLVDLAIYEPKTFKSLAALAKRRQQEGF AAALGDGKEPEGIFSRVVQYH hide sequence

Ensembl Acc Id:

ENSRNOP00000025213 ⟸ ENSRNOT00000025213

Ensembl Acc Id:

ENSRNOP00000085470 ⟸ ENSRNOT00000116054

RefSeq Acc Id:	XP_063144464 ⟸ XM_063288394
- Peptide Label:	isoform X1
- UniProtKB:	A6IUS6 (UniProtKB/TrEMBL), B2GV62 (UniProtKB/TrEMBL), F7ELM1 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B2GV62-F1-model_v2	AlphaFold	B2GV62	1-149	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694330

Promoter ID:

EPDNEW_R4855

Type:

initiation region

Name:

Mrpl20_1

Description:

mitochondrial ribosomal protein L20

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	173,248,341 - 173,248,401	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1588219	AgrOrtholog
BioCyc Gene	G2FUF-38897	BioCyc
Ensembl Genes	ENSRNOG00000018647	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000025213.6	UniProtKB/TrEMBL
	ENSRNOT00000116054.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.1900.20	UniProtKB/TrEMBL
	6.10.160.10	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7192827	IMAGE-MGC_LOAD
InterPro	Ribosomal_L20	UniProtKB/TrEMBL
	Ribosomal_protein_L20_C-ter	UniProtKB/TrEMBL
KEGG Report	rno:680747	UniProtKB/TrEMBL
MGC_CLONE	MGC:188136	IMAGE-MGC_LOAD
NCBI Gene	680747	ENTREZGENE
PANTHER	39S RIBOSOMAL PROTEIN L20, MITOCHONDRIAL	UniProtKB/TrEMBL
	Ribosomal_L20	UniProtKB/TrEMBL
Pfam	Ribosomal_L20	UniProtKB/TrEMBL
PhenoGen	Mrpl20	PhenoGen
PRINTS	RIBOSOMALL20	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000018647	RatGTEx
Superfamily-SCOP	SSF74731	UniProtKB/TrEMBL
UniProt	A0A8I6A063_RAT	UniProtKB/TrEMBL
	A6IUS6	ENTREZGENE, UniProtKB/TrEMBL
	B2GV62	ENTREZGENE
	F7ELM1	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	B2GV62	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-05	Mrpl20	mitochondrial ribosomal protein L20	LOC680747	similar to mitochondrial ribosomal protein L20	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-01-09	LOC680747	similar to mitochondrial ribosomal protein L20	LOC687253	similar to mitochondrial ribosomal protein L20	Data merged from RGD:1587725	1643240	APPROVED
2006-11-19	LOC680747	similar to mitochondrial ribosomal protein L20			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-19	LOC687253	similar to mitochondrial ribosomal protein L20			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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