Galntl6 (polypeptide N-acetylgalactosaminyltransferase-like 6) - Rat Genome Database

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Gene: Galntl6 (polypeptide N-acetylgalactosaminyltransferase-like 6) Rattus norvegicus
Analyze
Symbol: Galntl6
Name: polypeptide N-acetylgalactosaminyltransferase-like 6
RGD ID: 1564773
Description: Predicted to enable polypeptide N-acetylgalactosaminyltransferase activity. Predicted to be involved in protein O-linked glycosylation via threonine. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Orthologous to human GALNTL6 (polypeptide N-acetylgalactosaminyltransferase like 6); PARTICIPATES IN O-linked glycan biosynthetic pathway; INTERACTS WITH bisphenol A; copper atom; copper(0).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Galnt17; LOC361142; polypeptide N-acetylgalactosaminyltransferase 17; RGD1564773; similar to GalNAc transferase 10 isoform a; UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: Galntl6Tn(sb-T2/Bart3)2.311Mcwi  
Genetic Models: F344-Galntl6Tn(sb-T2/Bart3)2.311McwiRrrc
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21631,192,880 - 32,443,979 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1631,186,462 - 32,441,960 (+)Ensembl
Rnor_6.01634,551,052 - 35,803,840 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1635,573,058 - 35,802,979 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01634,380,195 - 35,619,972 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41634,557,663 - 35,853,849 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1631,164,115 - 32,391,302 (+)NCBICelera
Cytogenetic Map16p12-p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:22186971  


Genomics

Comparative Map Data
Galntl6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21631,192,880 - 32,443,979 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1631,186,462 - 32,441,960 (+)Ensembl
Rnor_6.01634,551,052 - 35,803,840 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1635,573,058 - 35,802,979 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01634,380,195 - 35,619,972 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41634,557,663 - 35,853,849 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1631,164,115 - 32,391,302 (+)NCBICelera
Cytogenetic Map16p12-p11NCBI
GALNTL6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384171,813,404 - 173,041,559 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl4171,812,254 - 173,041,559 (+)EnsemblGRCh38hg38GRCh38
GRCh374172,734,555 - 173,962,710 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364172,971,229 - 174,199,285 (+)NCBINCBI36hg18NCBI36
Celera4170,062,968 - 171,286,585 (+)NCBI
Cytogenetic Map4q34.1NCBI
HuRef4168,485,006 - 169,708,955 (+)NCBIHuRef
CHM1_14172,710,999 - 173,938,017 (+)NCBICHM1_1
T2T-CHM13v2.04175,165,678 - 176,380,965 (+)NCBI
Galntl6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39858,225,523 - 59,366,213 (-)NCBIGRCm39mm39
GRCm39 Ensembl858,227,086 - 59,365,674 (-)Ensembl
GRCm38857,772,489 - 58,912,531 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl857,774,052 - 58,912,640 (-)EnsemblGRCm38mm10GRCm38
MGSCv37860,255,020 - 61,390,424 (-)NCBIGRCm37mm9NCBIm37
MGSCv36861,319,636 - 61,803,769 (-)NCBImm8
Celera860,409,916 - 61,526,480 (-)NCBICelera
Cytogenetic Map8B2NCBI
Galntl6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540333,920,869 - 34,940,513 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540333,920,850 - 34,941,539 (-)NCBIChiLan1.0ChiLan1.0
GALNTL6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.14176,315,593 - 177,506,548 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4176,492,344 - 177,507,694 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v04164,033,081 - 165,270,337 (+)NCBIMhudiblu_PPA_v0panPan3
GALNTL6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12522,540,129 - 23,698,714 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2522,541,138 - 23,697,860 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2523,181,504 - 24,346,149 (+)NCBI
ROS_Cfam_1.02522,697,788 - 23,856,830 (+)NCBI
ROS_Cfam_1.0 Ensembl2522,698,809 - 23,857,005 (+)Ensembl
UMICH_Zoey_3.12522,621,466 - 23,805,080 (+)NCBI
UNSW_CanFamBas_1.02522,531,447 - 23,692,294 (+)NCBI
UU_Cfam_GSD_1.02522,687,620 - 23,845,411 (+)NCBI
Galntl6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494322,836,685 - 23,884,563 (+)NCBI
SpeTri2.0NW_0049365163,251,015 - 4,297,162 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GALNTL6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1416,933,273 - 18,143,473 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11416,932,854 - 18,147,724 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21418,851,657 - 19,437,202 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GALNTL6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17117,959,017 - 119,158,744 (+)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603797,952,397 - 99,173,168 (+)NCBIVero_WHO_p1.0
Galntl6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247693,383,532 - 4,537,902 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247693,382,769 - 4,539,805 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
D16Rat102  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21631,250,969 - 31,251,104 (+)MAPPERmRatBN7.2
Rnor_6.01634,610,131 - 34,610,265NCBIRnor6.0
Rnor_5.01634,437,827 - 34,437,961UniSTSRnor5.0
RGSC_v3.41634,614,771 - 34,614,907RGDRGSC3.4
RGSC_v3.41634,614,773 - 34,614,907UniSTSRGSC3.4
RGSC_v3.11634,614,846 - 34,614,982RGD
Celera1631,220,763 - 31,220,897UniSTS
SHRSP x BN Map1612.35UniSTS
SHRSP x BN Map1612.35RGD
FHH x ACI Map1620.0199RGD
Cytogenetic Map16p12-p11UniSTS
D16Rat19  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21631,951,520 - 31,951,755 (+)MAPPERmRatBN7.2
Rnor_6.01635,307,110 - 35,307,342NCBIRnor6.0
Rnor_5.01635,126,908 - 35,127,140UniSTSRnor5.0
RGSC_v3.41635,339,929 - 35,340,162RGDRGSC3.4
RGSC_v3.41635,339,930 - 35,340,162UniSTSRGSC3.4
RGSC_v3.11635,340,004 - 35,340,237RGD
Celera1631,918,000 - 31,918,232UniSTS
FHH x ACI Map1621.0698RGD
FHH x ACI Map1621.0698UniSTS
Cytogenetic Map16p12-p11UniSTS
BE102110  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21631,193,068 - 31,193,274 (+)MAPPERmRatBN7.2
Rnor_6.01634,552,757 - 34,552,962NCBIRnor6.0
Rnor_5.01634,380,453 - 34,380,658UniSTSRnor5.0
RGSC_v3.41634,556,454 - 34,556,659UniSTSRGSC3.4
Celera1631,162,906 - 31,163,111UniSTS
Cytogenetic Map16p12-p11UniSTS
AU048100  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21631,951,292 - 31,951,482 (+)MAPPERmRatBN7.2
Rnor_6.01635,306,882 - 35,307,071NCBIRnor6.0
Rnor_5.01635,126,680 - 35,126,869UniSTSRnor5.0
RGSC_v3.41635,339,702 - 35,339,891UniSTSRGSC3.4
Celera1631,917,772 - 31,917,961UniSTS
Cytogenetic Map16p12-p11UniSTS
RH134742  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22048,520,675 - 48,520,874 (+)MAPPERmRatBN7.2
Rnor_6.02050,137,123 - 50,137,321NCBIRnor6.0
Rnor_5.02051,753,705 - 51,753,903UniSTSRnor5.0
RGSC_v3.42048,989,382 - 48,989,580UniSTSRGSC3.4
Celera1631,493,101 - 31,493,299UniSTS
RH 3.4 Map20512.8UniSTS
Cytogenetic Map16p12-p11UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
631561Hcuc2Hepatic copper content QTL 22.8hepatic copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338015043025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16422760943025077Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16422760948972724Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162173597566735975Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)162432551369325513Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)162515279370152793Rat
1298529Arunc1Aerobic running capacity QTL 14exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)163195152060148445Rat


Genetic Models
This gene Galntl6 is modified in the following models/strains
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:290
Count of miRNA genes:202
Interacting mature miRNAs:238
Transcripts:ENSRNOT00000059580, ENSRNOT00000074353
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 16
Low 1 48 4 8 8
Below cutoff 2 4 7 6 2 2 4 15 17 3 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000059580   ⟹   ENSRNOP00000056338
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1635,573,058 - 35,802,979 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000074353   ⟹   ENSRNOP00000066967
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1631,740,966 - 31,852,817 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000109059   ⟹   ENSRNOP00000083243
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1631,186,462 - 32,441,960 (+)Ensembl
RefSeq Acc Id: NM_001135756   ⟹   NP_001129228
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21631,194,278 - 32,440,940 (+)NCBI
Rnor_6.01634,553,966 - 35,802,982 (+)NCBI
Rnor_5.01634,380,195 - 35,619,972 (+)NCBI
RGSC_v3.41634,557,663 - 35,853,849 (+)RGD
Celera1631,164,115 - 32,391,302 (+)RGD
Sequence:
RefSeq Acc Id: XM_017600182   ⟹   XP_017455671
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21631,192,880 - 32,443,979 (+)NCBI
Rnor_6.01634,551,052 - 35,803,840 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039094637   ⟹   XP_038950565
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21631,740,983 - 32,443,979 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001129228 (Get FASTA)   NCBI Sequence Viewer  
  XP_017455671 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950565 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL87175 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001129228   ⟸   NM_001135756
- Sequence:
RefSeq Acc Id: XP_017455671   ⟸   XM_017600182
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000056338   ⟸   ENSRNOT00000059580
RefSeq Acc Id: XP_038950565   ⟸   XM_039094637
- Peptide Label: isoform X2
RefSeq Acc Id: ENSRNOP00000066967   ⟸   ENSRNOT00000074353
RefSeq Acc Id: ENSRNOP00000083243   ⟸   ENSRNOT00000109059

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZTT8-F1-model_v2 AlphaFold D3ZTT8 1-436 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564773 AgrOrtholog
BioCyc Gene G2FUF-11554 BioCyc
Ensembl Genes ENSRNOG00000038976 Ensembl
  ENSRNOG00000067282 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000066967.3 UniProtKB/TrEMBL
  ENSRNOP00000083243 ENTREZGENE
  ENSRNOP00000083243.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000074353.3 UniProtKB/TrEMBL
  ENSRNOT00000109059 ENTREZGENE
  ENSRNOT00000109059.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.550.10 UniProtKB/TrEMBL
InterPro Glyco_trans_2-like UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
NCBI Gene 361142 ENTREZGENE
Pfam Glycos_transf_2 UniProtKB/TrEMBL
PhenoGen Galntl6 PhenoGen
Superfamily-SCOP SSF53448 UniProtKB/TrEMBL
UniProt A0A8I5ZYW6_RAT UniProtKB/TrEMBL
  M0RBM6_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-12-01 Galntl6  UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6  RGD1564773  similar to GalNAc transferase 10 isoform a   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1564773  similar to GalNAc transferase 10 isoform a   RGD1564773_predicted  similar to GalNAc transferase 10 isoform a (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1564773_predicted  similar to GalNAc transferase 10 isoform a (predicted)  LOC361142  similar to GalNAc transferase 10 isoform a  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC361142  similar to GalNAc transferase 10 isoform a      Symbol and Name status set to provisional 70820 PROVISIONAL