GALNTL6 (polypeptide N-acetylgalactosaminyltransferase like 6) - Rat Genome Database

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Gene: GALNTL6 (polypeptide N-acetylgalactosaminyltransferase like 6) Sus scrofa
Analyze
Symbol: GALNTL6
Name: polypeptide N-acetylgalactosaminyltransferase like 6
RGD ID: 14136873
Description: ENCODES a protein that exhibits carbohydrate binding (inferred); glycosyltransferase activity (inferred); polypeptide N-acetylgalactosaminyltransferase activity (inferred); INVOLVED IN protein glycosylation (inferred); protein O-linked glycosylation (inferred); protein O-linked glycosylation via threonine (inferred); ASSOCIATED WITH genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN Golgi apparatus (inferred); Golgi membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: polypeptide N-acetylgalactosaminyltransferase-like 6; UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1416,933,292 - 18,143,672 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11416,932,854 - 18,147,724 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21418,851,657 - 19,437,202 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
GALNTL6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1416,933,292 - 18,143,672 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11416,932,854 - 18,147,724 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21418,851,657 - 19,437,202 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GALNTL6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384171,813,404 - 173,041,559 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4171,812,254 - 173,041,559 (+)EnsemblGRCh38hg38GRCh38
GRCh374172,734,555 - 173,962,710 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364172,971,229 - 174,199,285 (+)NCBINCBI36Build 36hg18NCBI36
Celera4170,062,968 - 171,286,585 (+)NCBICelera
Cytogenetic Map4q34.1NCBI
HuRef4168,485,006 - 169,708,955 (+)NCBIHuRef
CHM1_14172,710,999 - 173,938,017 (+)NCBICHM1_1
T2T-CHM13v2.04175,165,678 - 176,380,965 (+)NCBIT2T-CHM13v2.0
Galntl6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39858,225,523 - 59,366,213 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl858,227,086 - 59,365,674 (-)EnsemblGRCm39 Ensembl
GRCm38857,772,489 - 58,912,531 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl857,774,052 - 58,912,640 (-)EnsemblGRCm38mm10GRCm38
MGSCv37860,255,020 - 61,390,424 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36861,319,636 - 61,803,769 (-)NCBIMGSCv36mm8
Celera860,409,916 - 61,526,480 (-)NCBICelera
Cytogenetic Map8B2NCBI
cM Map830.72NCBI
Galntl6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81636,203,674 - 37,454,709 (+)NCBIGRCr8
mRatBN7.21631,192,880 - 32,443,979 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1631,186,462 - 32,441,960 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1634,789,710 - 36,042,575 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01638,223,431 - 39,453,912 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01634,410,329 - 35,673,060 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01634,551,052 - 35,803,840 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1635,573,058 - 35,802,979 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01634,380,195 - 35,619,972 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41634,557,663 - 35,853,849 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1631,164,115 - 32,391,302 (+)NCBICelera
Cytogenetic Map16p12-p11NCBI
Galntl6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540333,920,869 - 34,940,513 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540333,920,850 - 34,941,539 (-)NCBIChiLan1.0ChiLan1.0
GALNTL6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23169,566,332 - 170,802,323 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14169,946,524 - 171,183,408 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04164,033,081 - 165,270,337 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14176,315,593 - 177,506,548 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4176,492,344 - 177,507,694 (+)Ensemblpanpan1.1panPan2
GALNTL6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12522,540,129 - 23,698,714 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2522,541,138 - 23,697,860 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2523,181,504 - 24,346,149 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02522,697,788 - 23,856,830 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2522,698,809 - 23,857,005 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12522,621,466 - 23,805,080 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02522,531,447 - 23,692,294 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02522,687,620 - 23,845,411 (+)NCBIUU_Cfam_GSD_1.0
Galntl6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494322,836,685 - 23,884,563 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365163,252,149 - 4,295,728 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365163,251,015 - 4,297,162 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GALNTL6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17117,959,017 - 119,158,744 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603797,952,397 - 99,173,168 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Galntl6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247693,383,532 - 4,537,902 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247693,382,769 - 4,539,805 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GALNTL6
46057 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system hemolymphoid system nervous system renal system
High
Medium
Low 3 23
Below cutoff 3 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000024965   ⟹   ENSSSCP00000019965
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1416,933,292 - 18,143,672 (-)Ensembl
RefSeq Acc Id: XM_021072439   ⟹   XP_020928098
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11416,932,854 - 18,144,380 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021072440   ⟹   XP_020928099
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11416,933,290 - 17,746,701 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021072442   ⟹   XP_020928101
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11416,932,902 - 18,144,508 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021072443   ⟹   XP_020928102
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11416,933,297 - 18,144,567 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021072444   ⟹   XP_020928103
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11416,933,290 - 18,147,724 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021072445   ⟹   XP_020928104
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11416,933,290 - 18,147,724 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020928098   ⟸   XM_021072439
- Peptide Label: isoform X1
- UniProtKB: A0A4X1V6H3 (UniProtKB/TrEMBL),   I3L7G0 (UniProtKB/TrEMBL),   A0A8D1M8V0 (UniProtKB/TrEMBL),   A0A8D2C2V4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020928101   ⟸   XM_021072442
- Peptide Label: isoform X3
- UniProtKB: A0A8D1M8V0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020928104   ⟸   XM_021072445
- Peptide Label: isoform X5
- UniProtKB: A0A8D1M8V0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020928103   ⟸   XM_021072444
- Peptide Label: isoform X5
- UniProtKB: A0A8D1M8V0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020928099   ⟸   XM_021072440
- Peptide Label: isoform X2
- UniProtKB: A0A8D1M8V0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020928102   ⟸   XM_021072443
- Peptide Label: isoform X4
- UniProtKB: A0A8D1M8V0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000019965   ⟸   ENSSSCT00000024965
Protein Domains
Glycosyltransferase 2-like   Ricin B lectin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000021805 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005025294 UniProtKB/TrEMBL
  ENSSSCG00035044215 UniProtKB/TrEMBL
  ENSSSCG00045000347 UniProtKB/TrEMBL
  ENSSSCG00050034701 UniProtKB/TrEMBL
  ENSSSCG00055027924 UniProtKB/TrEMBL
  ENSSSCG00060039316 UniProtKB/TrEMBL
  ENSSSCG00065024369 UniProtKB/TrEMBL
  ENSSSCG00070022105 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000024965 ENTREZGENE
  ENSSSCT00000024965.4 UniProtKB/TrEMBL
  ENSSSCT00005040429.1 UniProtKB/TrEMBL
  ENSSSCT00035058745.1 UniProtKB/TrEMBL
  ENSSSCT00045000490.1 UniProtKB/TrEMBL
  ENSSSCT00050046655.1 UniProtKB/TrEMBL
  ENSSSCT00055055274.1 UniProtKB/TrEMBL
  ENSSSCT00060053180.1 UniProtKB/TrEMBL
  ENSSSCT00065032540.1 UniProtKB/TrEMBL
  ENSSSCT00070043967.1 UniProtKB/TrEMBL
  ENSSSCT00070043971.1 UniProtKB/TrEMBL
  ENSSSCT00070043975.1 UniProtKB/TrEMBL
Gene3D-CATH 2.80.10.50 UniProtKB/TrEMBL
InterPro GalNAc-T UniProtKB/TrEMBL
  Glyco_trans_2-like UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
  Ricin_B-like_lectins UniProtKB/TrEMBL
  Ricin_B_lectin UniProtKB/TrEMBL
NCBI Gene GALNTL6 ENTREZGENE
PANTHER N-ACETYLGALACTOSAMINYLTRANSFERASE UniProtKB/TrEMBL
  POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE-LIKE 6 UniProtKB/TrEMBL
Pfam Glycos_transf_2 UniProtKB/TrEMBL
  Ricin_B_lectin UniProtKB/TrEMBL
PROSITE RICIN_B_LECTIN UniProtKB/TrEMBL
SMART RICIN UniProtKB/TrEMBL
Superfamily-SCOP SSF50370 UniProtKB/TrEMBL
  SSF53448 UniProtKB/TrEMBL
UniProt A0A4X1V2Y2_PIG UniProtKB/TrEMBL
  A0A4X1V5Y2_PIG UniProtKB/TrEMBL
  A0A4X1V6H3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1M8V0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D2C2V4 ENTREZGENE, UniProtKB/TrEMBL
  I3L7G0 ENTREZGENE
UniProt Secondary I3L7G0 UniProtKB/TrEMBL
VGNC ID VGNC:103947 ENTREZGENE