Gse1 (Gse1 coiled-coil protein) - Rat Genome Database

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Gene: Gse1 (Gse1 coiled-coil protein) Rattus norvegicus
Analyze
Symbol: Gse1
Name: Gse1 coiled-coil protein
RGD ID: 1562686
Description: Human ortholog(s) of this gene implicated in stomach cancer. Orthologous to human GSE1 (Gse1 coiled-coil protein); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 3H-1,2-dithiole-3-thione.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: genetic suppressor element 1; LOC307913; RGD1562686; similar to genetic suppressor element 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21948,274,164 - 48,629,456 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1948,274,127 - 48,629,458 (+)Ensembl
Rnor_6.01953,799,945 - 54,153,732 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1954,060,622 - 54,148,970 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01964,529,034 - 64,876,612 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41950,874,475 - 50,916,263 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1947,529,902 - 47,883,061 (+)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GSE1 predicts poor survival outcome in gastric cancer patients by SLC7A5 enhancement of tumor growth and metastasis. Ding K, etal., J Biol Chem. 2018 Mar 16;293(11):3949-3964. doi: 10.1074/jbc.RA117.001103. Epub 2018 Jan 24.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Gse1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21948,274,164 - 48,629,456 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1948,274,127 - 48,629,458 (+)Ensembl
Rnor_6.01953,799,945 - 54,153,732 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1954,060,622 - 54,148,970 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01964,529,034 - 64,876,612 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41950,874,475 - 50,916,263 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1947,529,902 - 47,883,061 (+)NCBICelera
Cytogenetic Map19q12NCBI
GSE1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381685,169,512 - 85,676,200 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1685,169,525 - 85,676,204 (+)EnsemblGRCh38hg38GRCh38
GRCh371685,645,015 - 85,709,806 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361684,204,425 - 84,267,313 (+)NCBINCBI36hg18NCBI36
Celera1669,950,111 - 70,012,922 (+)NCBI
Cytogenetic Map16q24.1NCBI
HuRef1671,388,821 - 71,451,974 (+)NCBIHuRef
CHM1_11687,056,381 - 87,121,164 (+)NCBICHM1_1
T2T-CHM13v2.01691,235,680 - 91,251,831 (+)NCBI
T2T-CHM13v2.01691,676,624 - 91,741,713 (+)NCBI
Gse1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398120,955,233 - 121,308,122 (+)NCBIGRCm39mm39
GRCm39 Ensembl8120,955,195 - 121,308,129 (+)Ensembl
GRCm388120,228,501 - 120,581,383 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8120,228,456 - 120,581,390 (+)EnsemblGRCm38mm10GRCm38
MGSCv378123,012,766 - 123,105,283 (+)NCBIGRCm37mm9NCBIm37
MGSCv368123,374,843 - 123,467,354 (+)NCBImm8
Celera8124,703,936 - 124,797,008 (+)NCBICelera
Cytogenetic Map8E1NCBI
Gse1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955541720,458 - 808,174 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955541517,715 - 808,174 (+)NCBIChiLan1.0ChiLan1.0
GSE1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11685,178,960 - 85,680,262 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1685,617,854 - 85,680,262 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01665,838,691 - 66,340,644 (+)NCBIMhudiblu_PPA_v0panPan3
GSE1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1566,997,948 - 67,391,587 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl567,001,022 - 67,180,979 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha567,013,772 - 67,426,986 (-)NCBI
ROS_Cfam_1.0567,225,804 - 67,644,827 (-)NCBI
ROS_Cfam_1.0 Ensembl567,229,422 - 67,447,900 (-)Ensembl
UMICH_Zoey_3.1567,247,427 - 67,660,851 (-)NCBI
UNSW_CanFamBas_1.0567,081,809 - 67,495,089 (-)NCBI
UU_Cfam_GSD_1.0567,496,368 - 67,910,071 (-)NCBI
Gse1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934927,023,638 - 27,309,824 (-)NCBI
SpeTri2.0NW_0049366412,779,521 - 2,920,840 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GSE1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl63,246,764 - 3,349,122 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.163,244,167 - 3,657,636 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.263,553,241 - 3,612,190 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GSE1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1570,585,176 - 71,087,575 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl570,966,855 - 71,083,912 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660474,653,400 - 4,967,774 (-)NCBIVero_WHO_p1.0
Gse1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247462,027,893 - 2,108,734 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247461,842,635 - 2,106,466 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
BE108343  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21948,627,603 - 48,627,794 (+)MAPPERmRatBN7.2
Rnor_6.01954,151,882 - 54,152,072NCBIRnor6.0
Rnor_5.01964,874,762 - 64,874,952UniSTSRnor5.0
RGSC_v3.41950,915,942 - 50,916,132UniSTSRGSC3.4
Celera1947,881,211 - 47,881,401UniSTS
RH 3.4 Map19648.3UniSTS
Cytogenetic Map19q12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum insulin level (CMO:0000358)193383821455283146Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)194434021455283277Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:50
Count of miRNA genes:35
Interacting mature miRNAs:35
Transcripts:ENSRNOT00000023607, ENSRNOT00000068572
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 24 30 22 18 22 64 20 24 11
Low 19 27 19 1 19 8 11 10 15 17 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_001078877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006255748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_226533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC099158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000023607   ⟹   ENSRNOP00000023607
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1948,585,961 - 48,629,458 (+)Ensembl
Rnor_6.0 Ensembl1954,060,622 - 54,148,970 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000094643   ⟹   ENSRNOP00000091424
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1948,274,127 - 48,629,458 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000097001   ⟹   ENSRNOP00000084243
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1948,536,103 - 48,629,458 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000108224   ⟹   ENSRNOP00000079149
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1948,535,065 - 48,629,458 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000112263   ⟹   ENSRNOP00000093058
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1948,535,065 - 48,629,458 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000112924   ⟹   ENSRNOP00000087793
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1948,274,127 - 48,629,458 (+)Ensembl
RefSeq Acc Id: XM_006255748   ⟹   XP_006255810
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21948,535,065 - 48,629,456 (+)NCBI
Rnor_6.01954,061,328 - 54,153,732 (+)NCBI
Rnor_5.01964,529,034 - 64,876,612 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008772660   ⟹   XP_008770882
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21948,535,064 - 48,629,456 (+)NCBI
Rnor_6.01954,061,328 - 54,153,732 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008772661   ⟹   XP_008770883
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21948,585,933 - 48,629,456 (+)NCBI
Rnor_6.01954,109,492 - 54,153,732 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601449   ⟹   XP_017456938
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21948,274,379 - 48,629,456 (+)NCBI
Rnor_6.01953,799,946 - 54,153,732 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601450   ⟹   XP_017456939
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21948,274,376 - 48,629,456 (+)NCBI
Rnor_6.01953,799,945 - 54,153,732 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601451   ⟹   XP_017456940
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21948,274,164 - 48,629,456 (+)NCBI
Rnor_6.01953,799,948 - 54,153,732 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039098300   ⟹   XP_038954228
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21948,584,387 - 48,629,456 (+)NCBI
RefSeq Acc Id: XM_039098302   ⟹   XP_038954230
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21948,608,369 - 48,629,456 (+)NCBI
RefSeq Acc Id: XM_226533   ⟹   XP_226533
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21948,585,933 - 48,629,456 (+)NCBI
Rnor_6.01954,109,492 - 54,153,732 (+)NCBI
Rnor_5.01964,529,034 - 64,876,612 (+)NCBI
RGSC_v3.41950,874,475 - 50,916,263 (+)RGD
Sequence:
Reference Sequences
RefSeq Acc Id: XP_226533   ⟸   XM_226533
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006255810   ⟸   XM_006255748
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008770882   ⟸   XM_008772660
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_008770883   ⟸   XM_008772661
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_017456939   ⟸   XM_017601450
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017456938   ⟸   XM_017601449
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017456940   ⟸   XM_017601451
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSRNOP00000023607   ⟸   ENSRNOT00000023607
RefSeq Acc Id: XP_038954228   ⟸   XM_039098300
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038954230   ⟸   XM_039098302
- Peptide Label: isoform X9
RefSeq Acc Id: ENSRNOP00000087793   ⟸   ENSRNOT00000112924
RefSeq Acc Id: ENSRNOP00000079149   ⟸   ENSRNOT00000108224
RefSeq Acc Id: ENSRNOP00000093058   ⟸   ENSRNOT00000112263
RefSeq Acc Id: ENSRNOP00000091424   ⟸   ENSRNOT00000094643
RefSeq Acc Id: ENSRNOP00000084243   ⟸   ENSRNOT00000097001

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M4A7-F1-model_v2 AlphaFold F1M4A7 1-1106 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701195
Promoter ID:EPDNEW_R11716
Type:single initiation site
Name:Gse1_1
Description:Gse1 coiled-coil protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01954,060,694 - 54,060,754EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: RGSC_v3.4

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
19 50890206 50890207 G T snv LCR/2Mco (UMich)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562686 AgrOrtholog
BioCyc Gene G2FUF-5488 BioCyc
Ensembl Genes ENSRNOG00000017489 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000023607 ENTREZGENE
  ENSRNOP00000023607.7 UniProtKB/TrEMBL
  ENSRNOP00000079149 ENTREZGENE
  ENSRNOP00000079149.1 UniProtKB/TrEMBL
  ENSRNOP00000084243.1 UniProtKB/TrEMBL
  ENSRNOP00000087793 ENTREZGENE
  ENSRNOP00000087793.1 UniProtKB/TrEMBL
  ENSRNOP00000091424 ENTREZGENE
  ENSRNOP00000091424.1 UniProtKB/TrEMBL
  ENSRNOP00000093058 ENTREZGENE
  ENSRNOP00000093058.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000023607 ENTREZGENE
  ENSRNOT00000023607.9 UniProtKB/TrEMBL
  ENSRNOT00000094643 ENTREZGENE
  ENSRNOT00000094643.1 UniProtKB/TrEMBL
  ENSRNOT00000097001.1 UniProtKB/TrEMBL
  ENSRNOT00000108224 ENTREZGENE
  ENSRNOT00000108224.1 UniProtKB/TrEMBL
  ENSRNOT00000112263 ENTREZGENE
  ENSRNOT00000112263.1 UniProtKB/TrEMBL
  ENSRNOT00000112924 ENTREZGENE
  ENSRNOT00000112924.1 UniProtKB/TrEMBL
InterPro DUF3736 UniProtKB/TrEMBL
  GSE1 UniProtKB/TrEMBL
NCBI Gene 307913 ENTREZGENE
PANTHER PTHR17608 UniProtKB/TrEMBL
Pfam DUF3736 UniProtKB/TrEMBL
PhenoGen Gse1 PhenoGen
UniProt A0A8I5ZMU3_RAT UniProtKB/TrEMBL
  A0A8I5ZXE1_RAT UniProtKB/TrEMBL
  A0A8I6A4U2_RAT UniProtKB/TrEMBL
  A0A8I6AG34_RAT UniProtKB/TrEMBL
  A0A8I6AIT5_RAT UniProtKB/TrEMBL
  F1M4A7_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-02-22 Gse1  Gse1 coiled-coil protein  Gse1  genetic suppressor element 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-29 Gse1  genetic suppressor element 1  RGD1562686_predicted  similar to genetic suppressor element 1 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1562686_predicted  similar to genetic suppressor element 1 (predicted)  LOC307913  similar to genetic suppressor element 1  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC307913  similar to genetic suppressor element 1      Symbol and Name status set to provisional 70820 PROVISIONAL