Gse1 (Gse1 coiled-coil protein) - Rat Genome Database

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Gene: Gse1 (Gse1 coiled-coil protein) Rattus norvegicus
Analyze
Symbol: Gse1
Name: Gse1 coiled-coil protein
RGD ID: 1562686
Description: Human ortholog(s) of this gene implicated in stomach cancer. Orthologous to human GSE1 (Gse1 coiled-coil protein); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: genetic suppressor element 1; LOC307913; RGD1562686; similar to genetic suppressor element 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81965,182,678 - 65,538,183 (+)NCBIGRCr8
mRatBN7.21948,274,164 - 48,629,456 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1948,274,127 - 48,629,458 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01953,799,945 - 54,153,732 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1954,060,622 - 54,148,970 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01964,529,034 - 64,876,612 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41950,874,475 - 50,916,263 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1947,529,902 - 47,883,061 (+)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GSE1 predicts poor survival outcome in gastric cancer patients by SLC7A5 enhancement of tumor growth and metastasis. Ding K, etal., J Biol Chem. 2018 Mar 16;293(11):3949-3964. doi: 10.1074/jbc.RA117.001103. Epub 2018 Jan 24.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Gse1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81965,182,678 - 65,538,183 (+)NCBIGRCr8
mRatBN7.21948,274,164 - 48,629,456 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1948,274,127 - 48,629,458 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01953,799,945 - 54,153,732 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1954,060,622 - 54,148,970 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01964,529,034 - 64,876,612 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41950,874,475 - 50,916,263 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1947,529,902 - 47,883,061 (+)NCBICelera
Cytogenetic Map19q12NCBI
GSE1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381685,169,512 - 85,676,200 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1685,169,525 - 85,676,204 (+)EnsemblGRCh38hg38GRCh38
GRCh371685,645,015 - 85,709,806 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361684,204,425 - 84,267,313 (+)NCBINCBI36Build 36hg18NCBI36
Celera1669,950,111 - 70,012,922 (+)NCBICelera
Cytogenetic Map16q24.1NCBI
HuRef1671,388,821 - 71,451,974 (+)NCBIHuRef
CHM1_11687,056,381 - 87,121,164 (+)NCBICHM1_1
T2T-CHM13v2.01691,235,680 - 91,741,713 (+)NCBIT2T-CHM13v2.0
Gse1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398120,955,233 - 121,308,122 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8120,955,195 - 121,308,129 (+)EnsemblGRCm39 Ensembl
GRCm388120,228,501 - 120,581,383 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8120,228,456 - 120,581,390 (+)EnsemblGRCm38mm10GRCm38
MGSCv378123,012,766 - 123,105,283 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368123,374,843 - 123,467,354 (+)NCBIMGSCv36mm8
Celera8124,703,936 - 124,797,008 (+)NCBICelera
Cytogenetic Map8E1NCBI
cM Map869.69NCBI
Gse1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955541720,458 - 808,174 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955541517,715 - 808,174 (+)NCBIChiLan1.0ChiLan1.0
GSE1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21894,921,665 - 95,423,969 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan116100,838,710 - 101,341,245 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01665,838,691 - 66,340,644 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11685,178,960 - 85,680,262 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1685,617,854 - 85,680,262 (+)Ensemblpanpan1.1panPan2
GSE1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1566,997,948 - 67,391,587 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl567,001,022 - 67,180,979 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha567,013,772 - 67,426,986 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0567,225,804 - 67,644,827 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl567,229,422 - 67,447,900 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1567,247,427 - 67,660,851 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0567,081,809 - 67,495,089 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0567,496,368 - 67,910,071 (-)NCBIUU_Cfam_GSD_1.0
Gse1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934927,023,638 - 27,309,824 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366412,776,714 - 2,862,484 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366412,779,521 - 2,920,840 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GSE1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl63,246,764 - 3,349,122 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.163,244,167 - 3,657,636 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.263,553,241 - 3,612,190 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GSE1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1570,585,176 - 71,087,575 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl570,966,855 - 71,083,912 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660474,653,400 - 4,967,774 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gse1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247462,027,893 - 2,108,734 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247461,842,635 - 2,106,466 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gse1
1646 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:50
Count of miRNA genes:35
Interacting mature miRNAs:35
Transcripts:ENSRNOT00000023607, ENSRNOT00000068572
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)194434021455283277Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat

Markers in Region
BE108343  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21948,627,603 - 48,627,794 (+)MAPPERmRatBN7.2
Rnor_6.01954,151,882 - 54,152,072NCBIRnor6.0
Rnor_5.01964,874,762 - 64,874,952UniSTSRnor5.0
RGSC_v3.41950,915,942 - 50,916,132UniSTSRGSC3.4
Celera1947,881,211 - 47,881,401UniSTS
RH 3.4 Map19648.3UniSTS
Cytogenetic Map19q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_001078877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC099158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000023607   ⟹   ENSRNOP00000023607
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1948,585,961 - 48,629,458 (+)Ensembl
Rnor_6.0 Ensembl1954,060,622 - 54,148,970 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000094643   ⟹   ENSRNOP00000091424
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1948,274,127 - 48,629,458 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000097001   ⟹   ENSRNOP00000084243
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1948,536,103 - 48,629,458 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000108224   ⟹   ENSRNOP00000079149
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1948,535,065 - 48,629,458 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000112263   ⟹   ENSRNOP00000093058
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1948,535,065 - 48,629,458 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000112924   ⟹   ENSRNOP00000087793
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1948,274,127 - 48,629,458 (+)Ensembl
RefSeq Acc Id: NM_001427026   ⟹   NP_001413955
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81965,494,660 - 65,538,176 (+)NCBI
RefSeq Acc Id: XM_017601449   ⟹   XP_017456938
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81965,182,678 - 65,538,183 (+)NCBI
mRatBN7.21948,274,379 - 48,629,456 (+)NCBI
Rnor_6.01953,799,946 - 54,153,732 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001413955 (Get FASTA)   NCBI Sequence Viewer  
  XP_017456938 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL92700 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000023607.7
  ENSRNOP00000079149.1
  ENSRNOP00000084243.1
  ENSRNOP00000087793.1
  ENSRNOP00000091424.1
  ENSRNOP00000093058.1
RefSeq Acc Id: XP_017456938   ⟸   XM_017601449
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AG34 (UniProtKB/TrEMBL),   A0A8I6A4U2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000023607   ⟸   ENSRNOT00000023607
Ensembl Acc Id: ENSRNOP00000087793   ⟸   ENSRNOT00000112924
Ensembl Acc Id: ENSRNOP00000079149   ⟸   ENSRNOT00000108224
Ensembl Acc Id: ENSRNOP00000093058   ⟸   ENSRNOT00000112263
Ensembl Acc Id: ENSRNOP00000091424   ⟸   ENSRNOT00000094643
Ensembl Acc Id: ENSRNOP00000084243   ⟸   ENSRNOT00000097001
RefSeq Acc Id: NP_001413955   ⟸   NM_001427026
- UniProtKB: A6IZM2 (UniProtKB/TrEMBL),   F1M4A7 (UniProtKB/TrEMBL)
Protein Domains
Genetic suppressor element-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M4A7-F1-model_v2 AlphaFold F1M4A7 1-1106 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701195
Promoter ID:EPDNEW_R11716
Type:single initiation site
Name:Gse1_1
Description:Gse1 coiled-coil protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01954,060,694 - 54,060,754EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562686 AgrOrtholog
BioCyc Gene G2FUF-5488 BioCyc
Ensembl Genes ENSRNOG00000017489 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000023607.9 UniProtKB/TrEMBL
  ENSRNOT00000094643.1 UniProtKB/TrEMBL
  ENSRNOT00000097001.1 UniProtKB/TrEMBL
  ENSRNOT00000108224.1 UniProtKB/TrEMBL
  ENSRNOT00000112263.1 UniProtKB/TrEMBL
  ENSRNOT00000112924.1 UniProtKB/TrEMBL
InterPro DUF3736 UniProtKB/TrEMBL
  GSE1 UniProtKB/TrEMBL
NCBI Gene 307913 ENTREZGENE
PANTHER GENETIC SUPPRESSOR ELEMENT 1 UniProtKB/TrEMBL
  PTHR17608 UniProtKB/TrEMBL
Pfam DUF3736 UniProtKB/TrEMBL
PhenoGen Gse1 PhenoGen
PROSITE PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000017489 RatGTEx
UniProt A0A8I5ZMU3_RAT UniProtKB/TrEMBL
  A0A8I5ZXE1_RAT UniProtKB/TrEMBL
  A0A8I6A4U2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AG34 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AIT5_RAT UniProtKB/TrEMBL
  A6IZM2 ENTREZGENE, UniProtKB/TrEMBL
  F1M4A7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-02-22 Gse1  Gse1 coiled-coil protein  Gse1  genetic suppressor element 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-29 Gse1  genetic suppressor element 1  RGD1562686_predicted  similar to genetic suppressor element 1 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1562686_predicted  similar to genetic suppressor element 1 (predicted)  LOC307913  similar to genetic suppressor element 1  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC307913  similar to genetic suppressor element 1      Symbol and Name status set to provisional 70820 PROVISIONAL