Ctu2 (cytosolic thiouridylase subunit 2) - Rat Genome Database

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Gene: Ctu2 (cytosolic thiouridylase subunit 2) Rattus norvegicus
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Symbol: Ctu2
Name: cytosolic thiouridylase subunit 2
RGD ID: 1562594
Description: Predicted to enable sulfurtransferase activity. Predicted to be involved in tRNA wobble position uridine thiolation. Predicted to be located in cytoplasm. Predicted to be part of protein-containing complex. Predicted to be active in cytosol. Orthologous to human CTU2 (cytosolic thiouridylase subunit 2); INTERACTS WITH bisphenol A; Soman; tetrachloromethane.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: cytoplasmic tRNA 2-thiolation protein 2; cytosolic thiouridylase subunit 2 homolog; cytosolic thiouridylase subunit 2 homolog (S. pombe); LOC292069; MGC125094; Ncs2; similar to RIKEN cDNA 2310061F22
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81967,447,762 - 67,453,169 (+)NCBIGRCr8
mRatBN7.21950,539,184 - 50,544,629 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1950,539,352 - 50,544,623 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1957,334,554 - 57,339,522 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01958,014,331 - 58,019,558 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01960,233,177 - 60,238,145 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01955,300,531 - 55,305,543 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1955,300,395 - 55,305,702 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01966,009,931 - 66,014,988 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41952,765,786 - 52,771,016 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1949,778,881 - 49,784,108 (+)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ctu2Rat16Q24.3 Microdeletion Syndrome  ISORGD:16041658554872ClinVar Annotator: match by term: 16q24.3 microdeletion syndromeClinVar 
Ctu2Ratautosomal recessive chronic granulomatous disease 4  ISORGD:16041658554872ClinVar Annotator: match by term: Granulomatous disease, chronic, autosomal recessive, cytochrome b-negativeClinVarPMID:10910929|PMID:20167518|PMID:22876374|PMID:28492532
Ctu2RatCAKUT  ISORGD:16041658554872ClinVar Annotator: match by term: Congenital anomalies of the kidney and urinary tractClinVarPMID:25741868|PMID:28492532|PMID:30143558|PMID:33057194|PMID:35982159
Ctu2RatFanconi anemia  ISORGD:16041658554872ClinVar Annotator: match by term: Fanconi anemiaClinVarPMID:28492532
Ctu2RatKBG syndrome  ISORGD:16041658554872ClinVar Annotator: match by term: KBG syndromeClinVarPMID:21782149|PMID:25125236|PMID:25413698|PMID:25652421|PMID:28492532|PMID:31602316|PMID:31690835
Ctu2Ratmicrocephaly  ISORGD:16041658554872ClinVar Annotator: match by term: MicrocephalyClinVarPMID:17576681|PMID:25741868|PMID:26633546|PMID:27480277|PMID:28492532|PMID:9536098
Ctu2RatMicrocephaly, Facial Dysmorphism, Renal Agenesis, and Ambiguous Genitalia Syndrome  ISORGD:16041658554872ClinVar Annotator: match by term: CTU2-related condition | ClinVar Annotator: match by term: Microcephaly, facial more ...ClinVarPMID:17576681|PMID:25081361|PMID:25741868|PMID:26633546|PMID:27480277|PMID:28492532|PMID:31301155|PMID:9536098
Ctu2Ratprimary ciliary dyskinesia 33  ISORGD:16041658554872ClinVar Annotator: match by term: Primary ciliary dyskinesia 33ClinVarPMID:28492532
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ctu2RatAnimal Disease Models  ISORGD:160416511554173CTD Direct Evidence: marker/mechanismCTDPMID:27811057
Ctu2RatBreast Neoplasms  ISORGD:160416511554173CTD Direct Evidence: marker/mechanismCTDPMID:27811057
Ctu2RatNeoplasm Invasiveness  ISORGD:160416511554173CTD Direct Evidence: marker/mechanismCTDPMID:27811057
Ctu2RatNeoplasm Metastasis  ISORGD:160416511554173CTD Direct Evidence: marker/mechanismCTDPMID:27811057
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ctu2RatMicrocephaly, Facial Dysmorphism, Renal Agenesis, and Ambiguous Genitalia Syndrome  ISORGD:16041657240710 OMIM 

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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ctu2Rat1,2-dimethylhydrazine multiple interactionsISORGD:15510926480464Folic Acid inhibits the reaction [1,2-Dimethylhydrazine results in increased expression of CTU2 mRNA]CTDPMID:22206623
Ctu2Rat1,2-dimethylhydrazine increases expressionISORGD:155109264804641,2-Dimethylhydrazine results in increased expression of CTU2 mRNACTDPMID:22206623
Ctu2Rat17beta-estradiol increases expressionISORGD:15510926480464Estradiol results in increased expression of CTU2 mRNACTDPMID:39298647
Ctu2Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISORGD:16041656480464Tetrachlorodibenzodioxin results in decreased expression of CTU2 mRNACTDPMID:21632981
Ctu2Rat4,4'-sulfonyldiphenol increases expressionISORGD:15510926480464bisphenol S results in increased expression of CTU2 mRNACTDPMID:39298647
Ctu2Rat4,4'-sulfonyldiphenol decreases methylationISORGD:15510926480464bisphenol S results in decreased methylation of CTU2 exonCTDPMID:33297965
Ctu2Rat4,4'-sulfonyldiphenol decreases methylationISORGD:16041656480464bisphenol S results in decreased methylation of CTU2 geneCTDPMID:31601247
Ctu2Ratacrylamide decreases expressionISORGD:16041656480464Acrylamide results in decreased expression of CTU2 mRNACTDPMID:32763439
Ctu2RatAflatoxin B2 alpha decreases methylationISORGD:16041656480464aflatoxin B2 results in decreased methylation of CTU2 intronCTDPMID:30157460
Ctu2Ratbisphenol A increases expressionEXP 6480464bisphenol A results in increased expression of CTU2 mRNACTDPMID:25181051|PMID:34947998
Ctu2Ratbisphenol A decreases methylationISORGD:16041656480464bisphenol A results in decreased methylation of CTU2 geneCTDPMID:31601247
Ctu2Ratbisphenol A decreases expressionEXP 6480464bisphenol A results in decreased expression of CTU2 proteinCTDPMID:32145629
Ctu2Ratbisphenol A decreases methylationISORGD:15510926480464bisphenol A results in decreased methylation of CTU2 promoterCTDPMID:27312807
Ctu2Ratbisphenol F decreases expressionISORGD:15510926480464bisphenol F results in decreased expression of CTU2 mRNACTDPMID:38685157
Ctu2Ratcaffeine decreases phosphorylationISORGD:16041656480464Caffeine results in decreased phosphorylation of CTU2 proteinCTDPMID:35688186
Ctu2Ratcalcitriol decreases expressionISORGD:16041656480464Calcitriol results in decreased expression of CTU2 mRNACTDPMID:21592394
Ctu2Ratcalcitriol multiple interactionsISORGD:16041656480464[Testosterone co-treated with Calcitriol] results in decreased expression of CTU2 mRNACTDPMID:21592394
Ctu2Ratcobalt dichloride increases expressionISORGD:16041656480464cobaltous chloride results in increased expression of CTU2 mRNACTDPMID:19376846
Ctu2Ratcyclosporin A increases expressionISORGD:16041656480464Cyclosporine results in increased expression of CTU2 mRNACTDPMID:20106945|PMID:25562108
Ctu2RatDDE increases expressionISORGD:16041656480464Dichlorodiphenyl Dichloroethylene results in increased expression of CTU2 mRNACTDPMID:38568856

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Biological Process
1 to 10 of 10 rows

  
Object Symbol
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Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ctu2Ratbiological_process  ND 159840711/2008: no relevant rat dataRGD 
Ctu2Ratprotein urmylation involved_inIEAUniRule:UR0001609871600115GO_REF:0000104UniProtGO_REF:0000104
Ctu2RattRNA processing involved_inIEAUniProtKB-KW:KW-08191600115GO_REF:0000043UniProtGO_REF:0000043
Ctu2RattRNA thio-modification involved_inIEAUniRule:UR0001609871600115GO_REF:0000104UniProtGO_REF:0000104
Ctu2RattRNA thio-modification involved_inIEAInterPro:IPR0194071600115GO_REF:0000002InterProGO_REF:0000002
Ctu2RattRNA thio-modification involved_inISSUniProtKB:P539231600115GO_REF:0000024UniProtGO_REF:0000024
Ctu2RattRNA wobble position uridine thiolation involved_inIBACGD:CAL0000189560|PANTHER:PTN000466898|PomBase:SPBC19C2.13c|SGD:S0000050631600115GO_REF:0000033GO_CentralGO_REF:0000033
Ctu2RattRNA wobble uridine modification involved_inIEAUniRule:UR0001609871600115GO_REF:0000104UniProtGO_REF:0000104
Ctu2RattRNA wobble uridine modification involved_inIEAInterPro:IPR0194071600115GO_REF:0000002InterProGO_REF:0000002
Ctu2RattRNA wobble uridine modification involved_inISSUniProtKB:P539231600115GO_REF:0000024UniProtGO_REF:0000024
1 to 10 of 10 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ctu2Ratcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
Ctu2Ratcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
Ctu2Ratcytoplasm located_inIEAUniRule:UR0001609871600115GO_REF:0000104UniProtGO_REF:0000104
Ctu2Ratcytosol located_inISSUniProtKB:P539231600115GO_REF:0000024UniProtGO_REF:0000024
Ctu2Ratcytosol is_active_inIBAPANTHER:PTN000466898|PomBase:SPBC19C2.13c1600115GO_REF:0000033GO_CentralGO_REF:0000033
Ctu2Ratprotein-containing complex part_ofISORGD:16041651624291 PMID:19017811RGDPMID:19017811
Ctu2Ratprotein-containing complex part_ofIEAUniProtKB:Q2VPK5|ensembl:ENSP000003883201600115GO_REF:0000107EnsemblGO_REF:0000107

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ctu2Ratnucleotidyltransferase activity enablesIEAUniRule:UR0001609871600115GO_REF:0000104UniProtGO_REF:0000104
Ctu2Ratprotein binding enablesISORGD:16041651624291UniProtKB:Q7Z7A3 PMID:19017811RGDPMID:19017811
Ctu2Ratsulfurtransferase activity enablesIBAPANTHER:PTN000466898|PomBase:SPBC19C2.13c|TAIR:locus:21253591600115GO_REF:0000033GO_CentralGO_REF:0000033
Ctu2RattRNA binding enablesIEAInterPro:IPR0194071600115GO_REF:0000002InterProGO_REF:0000002


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Comprehensive gene review and curation RGD comprehensive gene curation
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
PMID:19017811  



Ctu2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81967,447,762 - 67,453,169 (+)NCBIGRCr8
mRatBN7.21950,539,184 - 50,544,629 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1950,539,352 - 50,544,623 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1957,334,554 - 57,339,522 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01958,014,331 - 58,019,558 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01960,233,177 - 60,238,145 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01955,300,531 - 55,305,543 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1955,300,395 - 55,305,702 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01966,009,931 - 66,014,988 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41952,765,786 - 52,771,016 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1949,778,881 - 49,784,108 (+)NCBICelera
Cytogenetic Map19q12NCBI
CTU2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381688,706,503 - 88,715,396 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1688,706,483 - 88,715,396 (+)EnsemblGRCh38hg38GRCh38
GRCh371688,772,911 - 88,781,804 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361687,300,392 - 87,309,295 (+)NCBINCBI36Build 36hg18NCBI36
Celera1673,276,731 - 73,278,805 (-)NCBICelera
Cytogenetic Map16q24.3NCBI
HuRef1674,467,287 - 74,477,681 (+)NCBIHuRef
CHM1_11690,184,233 - 90,193,064 (+)NCBICHM1_1
T2T-CHM13v2.01694,775,662 - 94,785,864 (+)NCBIT2T-CHM13v2.0
Ctu2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398123,202,882 - 123,209,831 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8123,202,882 - 123,210,877 (+)EnsemblGRCm39 Ensembl
GRCm388122,476,068 - 122,483,092 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8122,476,143 - 122,484,138 (+)EnsemblGRCm38mm10GRCm38
MGSCv378125,000,043 - 125,006,992 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368125,362,280 - 125,367,837 (+)NCBIMGSCv36mm8
MGSCv368122,545,627 - 122,551,185 (+)NCBIMGSCv36mm8
Celera8126,705,199 - 126,712,124 (+)NCBICelera
Cytogenetic Map8E1NCBI
cM Map871.26NCBI
Ctu2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555412,610,021 - 2,618,197 (+)NCBIChiLan1.0ChiLan1.0
CTU2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21898,479,814 - 98,488,599 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan116104,391,891 - 104,400,757 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01669,419,811 - 69,428,500 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11689,080,476 - 89,088,363 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1689,079,132 - 89,088,231 (+)Ensemblpanpan1.1panPan2
CTU2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1564,640,389 - 64,647,298 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl564,640,389 - 64,647,215 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha564,651,709 - 64,658,603 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0564,860,459 - 64,867,333 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl564,860,459 - 64,867,295 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1564,886,634 - 64,893,522 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0564,718,200 - 64,725,080 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0565,124,376 - 65,131,248 (-)NCBIUU_Cfam_GSD_1.0
Ctu2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934925,225,667 - 25,232,488 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936641980,533 - 984,506 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936641980,493 - 986,015 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CTU2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6964,566 - 976,832 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16964,551 - 976,881 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CTU2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1574,091,156 - 74,100,941 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl574,091,258 - 74,100,573 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660471,579,212 - 1,589,006 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ctu2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624746871,668 - 877,719 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624746871,707 - 878,047 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

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Variants in Ctu2
19 total Variants

Predicted Target Of
Summary Value
Count of predictions:113
Count of miRNA genes:94
Interacting mature miRNAs:104
Transcripts:ENSRNOT00000033316
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 10 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2313395Anxrr26Anxiety related response QTL 26aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)194997648153225766Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)194434021455283277Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat

1 to 10 of 10 rows
RH131577  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81967,452,772 - 67,453,103 (+)Marker Load Pipeline
mRatBN7.21950,544,232 - 50,544,563 (+)MAPPERmRatBN7.2
Rnor_6.01955,305,147 - 55,305,477NCBIRnor6.0
Rnor_5.01966,014,592 - 66,014,922UniSTSRnor5.0
RGSC_v3.41952,770,620 - 52,770,950UniSTSRGSC3.4
Celera1949,783,712 - 49,784,042UniSTS
RH 3.4 Map19701.3UniSTS
Cytogenetic Map19q12UniSTS
RH141716  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21950,544,757 - 50,544,940 (+)MAPPERmRatBN7.2
Rnor_6.01955,305,672 - 55,305,854NCBIRnor6.0
Rnor_5.01966,015,117 - 66,015,299UniSTSRnor5.0
RGSC_v3.41952,771,145 - 52,771,327UniSTSRGSC3.4
Celera1949,784,237 - 49,784,419UniSTS
RH 3.4 Map19698.5UniSTS
Cytogenetic Map19q12UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000092169   ⟹   ENSRNOP00000069225
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1950,539,352 - 50,544,623 (+)Ensembl
Rnor_6.0 Ensembl1955,300,395 - 55,305,702 (+)Ensembl
RefSeq Acc Id: NM_001037094   ⟹   NP_001032171
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81967,447,942 - 67,453,169 (+)NCBI
mRatBN7.21950,539,402 - 50,544,629 (+)NCBI
Rnor_6.01955,300,531 - 55,305,543 (+)NCBI
Rnor_5.01966,009,931 - 66,014,988 (+)NCBI
RGSC_v3.41952,765,786 - 52,771,016 (+)RGD
Celera1949,778,881 - 49,784,108 (+)RGD
Sequence:
RefSeq Acc Id: XR_005496643
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81967,447,762 - 67,452,810 (+)NCBI
mRatBN7.21950,539,184 - 50,544,621 (+)NCBI
Protein RefSeqs NP_001032171 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH79393 (Get FASTA)   NCBI Sequence Viewer  
  AAH89862 (Get FASTA)   NCBI Sequence Viewer  
  AAI07465 (Get FASTA)   NCBI Sequence Viewer  
  EDL92752 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000069225
GenBank Protein Q3B7U4 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001032171   ⟸   NM_001037094
- UniProtKB: Q6AXQ6 (UniProtKB/Swiss-Prot),   Q5FVN4 (UniProtKB/Swiss-Prot),   F1LQR2 (UniProtKB/Swiss-Prot),   Q3B7U4 (UniProtKB/Swiss-Prot),   A0A0G2JUT8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000069225   ⟸   ENSRNOT00000092169

Name Modeler Protein Id AA Range Protein Structure
AF-Q3B7U4-F1-model_v2 AlphaFold Q3B7U4 1-528 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13701208
Promoter ID:EPDNEW_R11730
Type:single initiation site
Name:Ctu2_2
Description:cytosolic thiouridylase subunit 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11732  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01955,300,357 - 55,300,417EPDNEW
RGD ID:13701210
Promoter ID:EPDNEW_R11732
Type:single initiation site
Name:Ctu2_1
Description:cytosolic thiouridylase subunit 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11730  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01955,300,522 - 55,300,582EPDNEW


1 to 31 of 31 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-5394 BioCyc
BioCyc Pathway PWY-7888 [tRNA-uridine 2-thiolation (cytoplasmic)] BioCyc
BioCyc Pathway Image PWY-7888 BioCyc
Ensembl Genes ENSRNOG00000051531 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000092169 ENTREZGENE
Gene3D-CATH 3.40.50.620 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7111976 IMAGE-MGC_LOAD
  IMAGE:7126104 IMAGE-MGC_LOAD
  IMAGE:7454431 IMAGE-MGC_LOAD
InterPro CTU2 UniProtKB/Swiss-Prot
  Rossmann-like_a/b/a_fold UniProtKB/Swiss-Prot
KEGG Report rno:292069 UniProtKB/Swiss-Prot
MGC_CLONE MGC:108958 IMAGE-MGC_LOAD
  MGC:125094 IMAGE-MGC_LOAD
  MGC:94910 IMAGE-MGC_LOAD
NCBI Gene 292069 ENTREZGENE
PANTHER CYTOPLASMIC TRNA 2-THIOLATION PROTEIN 2 UniProtKB/Swiss-Prot
  PTHR20882 UniProtKB/Swiss-Prot
Pfam CTU2 UniProtKB/Swiss-Prot
PhenoGen Ctu2 PhenoGen
RatGTEx ENSRNOG00000051531 RatGTEx
Superfamily-SCOP Adenine nucleotide alpha hydrolases-like UniProtKB/Swiss-Prot
UniProt A0A0G2JUT8 ENTREZGENE, UniProtKB/TrEMBL
  CTU2_RAT UniProtKB/Swiss-Prot
  F1LQR2 ENTREZGENE
  Q3B7U4 ENTREZGENE
  Q5FVN4 ENTREZGENE
  Q6AXQ6 ENTREZGENE
UniProt Secondary F1LQR2 UniProtKB/Swiss-Prot
  Q5FVN4 UniProtKB/Swiss-Prot
  Q6AXQ6 UniProtKB/Swiss-Prot
1 to 31 of 31 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-29 Ctu2  cytosolic thiouridylase subunit 2  Ctu2  cytosolic thiouridylase subunit 2 homolog (S. pombe)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-10-22 Ctu2  cytosolic thiouridylase subunit 2 homolog (S. pombe)  LOC292069  similar to RIKEN cDNA 2310061F22  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC292069  similar to RIKEN cDNA 2310061F22      Symbol and Name status set to provisional 70820 PROVISIONAL