Cenpa (centromere protein A) - Rat Genome Database

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Gene: Cenpa (centromere protein A) Mus musculus
Analyze
Symbol: Cenpa
Name: centromere protein A
RGD ID: 1558182
MGI Page MGI
Description: Predicted to enable DNA binding activity and protein heterodimerization activity. Predicted to be a structural constituent of chromatin. Acts upstream of or within protein localization to chromosome, centromeric region. Located in CENP-A containing chromatin; condensed chromosome, centromeric region; and pericentric heterochromatin. Is expressed in 2-cell stage embryo; cerebral cortex ventricular layer; epiblast; germ cell of gonad; and nephrogenic zone. Human ortholog(s) of this gene implicated in autoimmune disease. Orthologous to human CENPA (centromere protein A).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: Cen; Cenp-A; centromere autoantigen A; centrosomin A; histone H3-like centromeric protein A
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39530,824,214 - 30,832,181 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl530,824,121 - 30,832,174 (+)EnsemblGRCm39 Ensembl
GRCm38530,666,877 - 30,674,837 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl530,666,777 - 30,674,830 (+)EnsemblGRCm38mm10GRCm38
MGSCv37530,969,275 - 30,977,199 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36530,943,483 - 30,951,407 (+)NCBIMGSCv36mm8
Celera528,145,648 - 28,153,572 (+)NCBICelera
Cytogenetic Map5B1NCBI
cM Map516.76NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,1-dichloroethene  (EXP)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
2-methylcholine  (ISO)
2-palmitoylglycerol  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methylcholanthrene  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxynon-2-enal  (EXP)
4-hydroxyphenyl retinamide  (EXP)
5-azacytidine  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
acrylamide  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
amitrole  (ISO)
arsenite(3-)  (EXP,ISO)
azathioprine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (EXP)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
butan-1-ol  (ISO)
cadmium atom  (ISO)
calcitriol  (ISO)
cantharidin  (EXP)
carbon nanotube  (EXP)
chloroprene  (EXP)
choline  (EXP)
cisplatin  (EXP,ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (EXP)
CU-O LINKAGE  (ISO)
cyclosporin A  (ISO)
cypermethrin  (EXP)
DDE  (ISO)
decabromodiphenyl ether  (ISO)
dexamethasone  (ISO)
diallyl trisulfide  (ISO)
diethylstilbestrol  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
Enterolactone  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
furan  (ISO)
genistein  (ISO)
gentamycin  (ISO)
hydrogen peroxide  (ISO)
hydroquinone  (ISO)
Indeno[1,2,3-cd]pyrene  (ISO)
indometacin  (ISO)
isobutanol  (ISO)
isoprenaline  (EXP)
L-methionine  (EXP)
leflunomide  (ISO)
lidocaine  (ISO)
lipopolysaccharide  (ISO)
lucanthone  (ISO)
menadione  (ISO)
methimazole  (ISO)
methyl methanesulfonate  (ISO)
methylseleninic acid  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (EXP)
N-methyl-N-nitrosourea  (ISO)
N-nitrosodiethylamine  (EXP)
N-Nitrosopyrrolidine  (ISO)
niclosamide  (ISO)
O-methyleugenol  (ISO)
ozone  (EXP)
palbociclib  (ISO)
paracetamol  (ISO)
parathion  (EXP)
perfluorononanoic acid  (ISO)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP)
piroxicam  (ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
progesterone  (ISO)
propanal  (ISO)
quercetin  (ISO)
raloxifene  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
silicon dioxide  (EXP)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (EXP,ISO)
sulfadimethoxine  (ISO)
sunitinib  (ISO)
tamoxifen  (EXP)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
thalidomide  (ISO)
thapsigargin  (ISO)
thioacetamide  (ISO)
thiram  (ISO)
titanium dioxide  (EXP)
trichloroethene  (ISO)
trimellitic anhydride  (EXP)
triptonide  (EXP)
troglitazone  (ISO)
trovafloxacin  (EXP)
tungsten  (EXP)
tunicamycin  (ISO)
valproic acid  (ISO)
vincaleukoblastine  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Gene structure and sequence analysis of mouse centromere proteins A and C. Kalitsis P, etal., Genomics 1998 Jan 1;47(1):108-14.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Hepatitis B virus X protein mutant upregulates CENP-A expression in hepatoma cells. Liu L, etal., Oncol Rep. 2012 Jan;27(1):168-73. doi: 10.3892/or.2011.1478. Epub 2011 Sep 28.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. MGD IEA MGD IEA
6. Autoepitopes on autoantigen centromere protein-A (CENP-A) are restricted to the N-terminal region, which has no homology with histone H3. Muro Y, etal., Clin Exp Immunol. 2000 Apr;120(1):218-23. doi: 10.1046/j.1365-2249.2000.01189.x.
7. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:3909945   PMID:9605877   PMID:9925740   PMID:10349636   PMID:10619130   PMID:10655499   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11084331   PMID:11389549   PMID:12011073  
PMID:12477932   PMID:12906131   PMID:14519686   PMID:14610273   PMID:15242786   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:19717431   PMID:21068465   PMID:21267068  
PMID:21677750   PMID:21743476   PMID:21873635   PMID:22516971   PMID:22622086   PMID:24362315   PMID:24781148   PMID:25480920   PMID:26816005   PMID:27040782   PMID:27499292   PMID:27670610  
PMID:28286049   PMID:28380054   PMID:28535371   PMID:28585134   PMID:28598437   PMID:28756949   PMID:33899739   PMID:34321999   PMID:34497269   PMID:34758320   PMID:35391626   PMID:35534577  
PMID:37048108   PMID:37742188   PMID:38616920  


Genomics

Comparative Map Data
Cenpa
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39530,824,214 - 30,832,181 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl530,824,121 - 30,832,174 (+)EnsemblGRCm39 Ensembl
GRCm38530,666,877 - 30,674,837 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl530,666,777 - 30,674,830 (+)EnsemblGRCm38mm10GRCm38
MGSCv37530,969,275 - 30,977,199 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36530,943,483 - 30,951,407 (+)NCBIMGSCv36mm8
Celera528,145,648 - 28,153,572 (+)NCBICelera
Cytogenetic Map5B1NCBI
cM Map516.76NCBI
CENPA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38226,786,056 - 26,794,589 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl226,764,289 - 26,801,067 (+)EnsemblGRCh38hg38GRCh38
GRCh37227,008,924 - 27,017,457 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36226,862,386 - 26,870,961 (+)NCBINCBI36Build 36hg18NCBI36
Build 34226,920,571 - 26,929,105NCBI
Celera226,854,943 - 26,863,518 (+)NCBICelera
Cytogenetic Map2p23.3NCBI
HuRef226,750,612 - 26,759,190 (+)NCBIHuRef
CHM1_1226,938,614 - 26,947,189 (+)NCBICHM1_1
T2T-CHM13v2.0226,827,645 - 26,836,182 (+)NCBIT2T-CHM13v2.0
Cenpa
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8631,420,062 - 31,431,703 (-)NCBIGRCr8
mRatBN7.2625,700,142 - 25,711,767 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl625,700,142 - 25,711,675 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx626,004,502 - 26,011,743 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0626,320,374 - 26,327,620 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0625,800,027 - 25,807,259 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0627,072,259 - 27,080,863 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl627,072,166 - 27,080,856 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0636,887,831 - 36,896,429 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4625,686,603 - 25,693,840 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera625,193,302 - 25,201,670 (-)NCBICelera
Cytogenetic Map6q14NCBI
Cenpa
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554698,799,071 - 8,819,876 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554698,799,312 - 8,819,637 (+)NCBIChiLan1.0ChiLan1.0
CENPA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21299,713,881 - 99,728,841 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A99,717,857 - 99,732,808 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A26,785,301 - 26,800,178 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
CENPA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11720,808,320 - 20,833,747 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1720,811,663 - 20,819,568 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1720,705,452 - 20,727,630 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01721,132,793 - 21,155,222 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1721,132,865 - 21,141,662 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11720,819,646 - 20,841,970 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01720,831,002 - 20,853,359 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01720,877,019 - 20,899,384 (+)NCBIUU_Cfam_GSD_1.0
Cenpa
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629265,118,691 - 65,128,436 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364935,714,782 - 5,720,837 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364935,715,274 - 5,720,816 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CENPA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3112,263,915 - 112,272,621 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13112,263,912 - 112,272,638 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23119,263,793 - 119,272,512 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CENPA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11480,838,049 - 80,847,609 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1480,839,335 - 80,846,608 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604531,298,072 - 31,307,015 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cenpa
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247388,899,362 - 8,906,373 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247388,899,260 - 8,906,379 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1309
Count of miRNA genes:453
Interacting mature miRNAs:516
Transcripts:ENSMUST00000031073, ENSMUST00000133316, ENSMUST00000134372, ENSMUST00000134846, ENSMUST00000144742, ENSMUST00000149759, ENSMUST00000150810
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301776Skts3_mskin tumor susceptibility 3 (mouse)Not determined52166729555667403Mouse
1301685Estq2_mestradiol regulated response QTL 2 (mouse)Not determined51563408449634190Mouse
11537367Hmtb11_mhemostasis and thrombosis 11 (mouse)52210082364806579Mouse
4141207Imrfq1_mimmune response to Factor IX QTL 1 (mouse)Not determined5812411742124239Mouse
11537368Hmtb10_mhemostasis and thrombosis 10 (mouse)52210082354500318Mouse
7394748Mom5_mmodifier of Min 5 (mouse)Not determined5884767233475637Mouse
15039371Nmrs21_mNAFLD-associated magnetic resonance shift 21 (mouse)5350482337504823Mouse
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5889069387841837Mouse
1300701Cd8ts1_mCD8 T cell subset 1 (mouse)Not determined52721534861215451Mouse
1357478Kdnw1_mkidney weight 1 (mouse)Not determined5891594940529869Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
14696730Kidlq1_mkidney weight, left QTL 1 (mouse)51356315247563152Mouse
10401122Pgia41_mproteoglycan induced arthritis 41 (mouse)Not determined582314434823280Mouse
1300719Iba5_minduction of brown adipocytes 5 (mouse)Not determined52068699354687134Mouse
1301806Actd2_mactivity-distance traveled 2 (mouse)Not determined5538452039384652Mouse

Markers in Region
AF012709  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38530,674,053 - 30,674,143UniSTSGRCm38
MGSCv37530,976,426 - 30,976,516UniSTSGRCm37
Celera528,152,799 - 28,152,889UniSTS
Cytogenetic Map5B1UniSTS
cM Map518.0UniSTS
Whitehead/MRC_RH5386.0UniSTS
UniSTS:235154  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38530,672,480 - 30,672,574UniSTSGRCm38
MGSCv37530,974,853 - 30,974,947UniSTSGRCm37
Celera528,151,226 - 28,151,320UniSTS
Cytogenetic Map5B1UniSTS
cM Map518.0UniSTS
PMC15551P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38530,672,468 - 30,672,828UniSTSGRCm38
MGSCv37530,974,841 - 30,975,201UniSTSGRCm37
Celera528,151,214 - 28,151,574UniSTS
Cytogenetic Map5B1UniSTS
cM Map518.0UniSTS
PMC15551P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38530,672,293 - 30,672,423UniSTSGRCm38
MGSCv37530,974,666 - 30,974,796UniSTSGRCm37
Celera528,151,039 - 28,151,169UniSTS
Cytogenetic Map5B1UniSTS
cM Map518.0UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001302129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001302130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001302131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001302132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001421447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001421448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001421449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_007681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_126074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_185302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_185303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_185304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA016357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC105298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF012709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF012710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK040313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK089033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC012280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ748418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY136144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000031073   ⟹   ENSMUSP00000031073
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl530,824,318 - 30,831,753 (+)Ensembl
GRCm38.p6 Ensembl530,666,974 - 30,674,409 (+)Ensembl
Ensembl Acc Id: ENSMUST00000133316   ⟹   ENSMUSP00000123493
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl530,824,241 - 30,831,722 (+)Ensembl
GRCm38.p6 Ensembl530,666,897 - 30,674,378 (+)Ensembl
Ensembl Acc Id: ENSMUST00000134372
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl530,829,299 - 30,831,546 (+)Ensembl
GRCm38.p6 Ensembl530,671,955 - 30,674,202 (+)Ensembl
Ensembl Acc Id: ENSMUST00000134846   ⟹   ENSMUSP00000119363
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl530,824,256 - 30,831,659 (+)Ensembl
GRCm38.p6 Ensembl530,666,912 - 30,674,315 (+)Ensembl
Ensembl Acc Id: ENSMUST00000144742   ⟹   ENSMUSP00000122831
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl530,824,121 - 30,832,174 (+)Ensembl
GRCm38.p6 Ensembl530,666,777 - 30,674,830 (+)Ensembl
Ensembl Acc Id: ENSMUST00000149759   ⟹   ENSMUSP00000142915
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl530,824,287 - 30,827,103 (+)Ensembl
GRCm38.p6 Ensembl530,666,943 - 30,669,759 (+)Ensembl
Ensembl Acc Id: ENSMUST00000150810
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl530,824,279 - 30,831,753 (+)Ensembl
GRCm38.p6 Ensembl530,666,935 - 30,674,409 (+)Ensembl
Ensembl Acc Id: ENSMUST00000197962
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl530,824,304 - 30,828,109 (+)Ensembl
GRCm38.p6 Ensembl530,666,960 - 30,670,765 (+)Ensembl
Ensembl Acc Id: ENSMUST00000199320   ⟹   ENSMUSP00000143575
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl530,824,301 - 30,831,408 (+)Ensembl
GRCm38.p6 Ensembl530,666,957 - 30,674,064 (+)Ensembl
Ensembl Acc Id: ENSMUST00000199617   ⟹   ENSMUSP00000142917
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl530,824,342 - 30,831,730 (+)Ensembl
GRCm38.p6 Ensembl530,666,998 - 30,674,386 (+)Ensembl
RefSeq Acc Id: NM_001302129   ⟹   NP_001289058
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39530,824,230 - 30,832,181 (+)NCBI
GRCm38530,666,886 - 30,674,837 (+)NCBI
Celera528,145,632 - 28,153,583 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001302130   ⟹   NP_001289059
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39530,824,230 - 30,832,181 (+)NCBI
GRCm38530,666,886 - 30,674,837 (+)NCBI
Celera528,145,632 - 28,153,583 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001302131   ⟹   NP_001289060
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39530,824,230 - 30,832,181 (+)NCBI
GRCm38530,666,886 - 30,674,837 (+)NCBI
Celera528,145,632 - 28,153,583 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001302132   ⟹   NP_001289061
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39530,824,230 - 30,832,181 (+)NCBI
GRCm38530,666,886 - 30,674,837 (+)NCBI
Celera528,145,632 - 28,153,583 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001421447   ⟹   NP_001408376
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39530,824,241 - 30,832,171 (+)NCBI
RefSeq Acc Id: NM_001421448   ⟹   NP_001408377
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39530,824,241 - 30,832,171 (+)NCBI
RefSeq Acc Id: NM_001421449   ⟹   NP_001408378
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39530,824,241 - 30,832,171 (+)NCBI
RefSeq Acc Id: NM_007681   ⟹   NP_031707
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39530,824,230 - 30,832,181 (+)NCBI
GRCm38530,666,886 - 30,674,837 (+)NCBI
MGSCv37530,969,275 - 30,977,199 (+)RGD
Celera528,145,632 - 28,153,583 (+)NCBI
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_126074
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39530,824,230 - 30,832,181 (+)NCBI
GRCm38530,666,886 - 30,674,837 (+)NCBI
Celera528,145,632 - 28,153,583 (+)NCBI
Sequence:
RefSeq Acc Id: NR_185302
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39530,824,241 - 30,832,171 (+)NCBI
RefSeq Acc Id: NR_185303
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39530,824,241 - 30,832,171 (+)NCBI
RefSeq Acc Id: NR_185304
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39530,824,241 - 30,832,171 (+)NCBI
RefSeq Acc Id: XM_036164762   ⟹   XP_036020655
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39530,824,263 - 30,831,753 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004942431
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39530,824,214 - 30,831,753 (+)NCBI
Sequence:
RefSeq Acc Id: NP_031707   ⟸   NM_007681
- Peptide Label: isoform 1
- UniProtKB: Q545C9 (UniProtKB/Swiss-Prot),   O35216 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001289060   ⟸   NM_001302131
- Peptide Label: isoform 2
- UniProtKB: O35216 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001289059   ⟸   NM_001302130
- Peptide Label: isoform 2
- UniProtKB: O35216 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001289058   ⟸   NM_001302129
- Peptide Label: isoform 2
- UniProtKB: O35216 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001289061   ⟸   NM_001302132
- Peptide Label: isoform 3
- UniProtKB: A0A0G2JGI2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000122831   ⟸   ENSMUST00000144742
Ensembl Acc Id: ENSMUSP00000031073   ⟸   ENSMUST00000031073
Ensembl Acc Id: ENSMUSP00000123493   ⟸   ENSMUST00000133316
Ensembl Acc Id: ENSMUSP00000142917   ⟸   ENSMUST00000199617
Ensembl Acc Id: ENSMUSP00000143575   ⟸   ENSMUST00000199320
Ensembl Acc Id: ENSMUSP00000142915   ⟸   ENSMUST00000149759
Ensembl Acc Id: ENSMUSP00000119363   ⟸   ENSMUST00000134846
RefSeq Acc Id: XP_036020655   ⟸   XM_036164762
- Peptide Label: isoform X2
RefSeq Acc Id: NP_001408376   ⟸   NM_001421447
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001408378   ⟸   NM_001421449
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001408377   ⟸   NM_001421448
- Peptide Label: isoform 4
Protein Domains
Histone H2A/H2B/H3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O35216-F1-model_v2 AlphaFold O35216 1-134 view protein structure

Promoters
RGD ID:6886294
Promoter ID:EPDNEW_M6598
Type:initiation region
Name:Cenpa_1
Description:Mus musculus centromere protein A , transcript variant 5, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38530,666,930 - 30,666,990EPDNEW
RGD ID:6837257
Promoter ID:MM_KWN:41768
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000053011,   OTTMUST00000053014,   OTTMUST00000053015,   OTTMUST00000053016,   UC008WVU.1,   UC008WVV.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36530,968,924 - 30,969,424 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:88375 AgrOrtholog
Ensembl Genes ENSMUSG00000029177 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000031073.10 UniProtKB/TrEMBL
  ENSMUST00000133316.8 UniProtKB/TrEMBL
  ENSMUST00000134846.8 UniProtKB/TrEMBL
  ENSMUST00000144742 ENTREZGENE
  ENSMUST00000144742.6 UniProtKB/Swiss-Prot
  ENSMUST00000149759.2 UniProtKB/TrEMBL
  ENSMUST00000199320 ENTREZGENE
  ENSMUST00000199320.5 UniProtKB/TrEMBL
  ENSMUST00000199617.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.20.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Histone-fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Histone_H2A/H2B/H3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Histone_H3/CENP-A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12615 UniProtKB/Swiss-Prot
MGD MGI:88375 ENTREZGENE
NCBI Gene 12615 ENTREZGENE
PANTHER CENTROMERE PROTEIN A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HISTONE H3.2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Histone UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cenpa PhenoGen
PRINTS HISTONEH3 UniProtKB/Swiss-Prot
SMART SM00428 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47113 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JEV0_MOUSE UniProtKB/TrEMBL
  A0A0G2JEV2_MOUSE UniProtKB/TrEMBL
  A0A0G2JGI2 ENTREZGENE, UniProtKB/TrEMBL
  CENPA_MOUSE UniProtKB/Swiss-Prot
  D6RCV6_MOUSE UniProtKB/TrEMBL
  D6RJ71_MOUSE UniProtKB/TrEMBL
  O35216 ENTREZGENE
  Q545C9 ENTREZGENE
UniProt Secondary Q545C9 UniProtKB/Swiss-Prot