CENPA (centromere protein A) - Rat Genome Database

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Gene: CENPA (centromere protein A) Pan paniscus
Analyze
Symbol: CENPA
Name: centromere protein A
RGD ID: 32731277
Description: INVOLVED IN CENP-A containing chromatin assembly (ortholog); establishment of mitotic spindle orientation (ortholog); kinetochore assembly (ortholog); ASSOCIATED WITH autoimmune disease (ortholog); genetic disease (ortholog); hepatocellular carcinoma (ortholog); FOUND IN CENP-A containing chromatin (ortholog); CENP-A containing nucleosome (ortholog); chromosome, centromeric region (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: histone H3-like centromeric protein A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21299,713,881 - 99,728,841 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A99,717,857 - 99,732,808 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A26,785,301 - 26,800,178 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CENPA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21299,713,881 - 99,728,841 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A99,717,857 - 99,732,808 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A26,785,301 - 26,800,178 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
CENPA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38226,786,056 - 26,794,589 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl226,764,289 - 26,801,067 (+)EnsemblGRCh38hg38GRCh38
GRCh37227,008,924 - 27,017,457 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36226,862,386 - 26,870,961 (+)NCBINCBI36Build 36hg18NCBI36
Build 34226,920,571 - 26,929,105NCBI
Celera226,854,943 - 26,863,518 (+)NCBICelera
Cytogenetic Map2p23.3NCBI
HuRef226,750,612 - 26,759,190 (+)NCBIHuRef
CHM1_1226,938,614 - 26,947,189 (+)NCBICHM1_1
T2T-CHM13v2.0226,827,645 - 26,836,182 (+)NCBIT2T-CHM13v2.0
Cenpa
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39530,824,214 - 30,832,181 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl530,824,121 - 30,832,174 (+)EnsemblGRCm39 Ensembl
GRCm38530,666,877 - 30,674,837 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl530,666,777 - 30,674,830 (+)EnsemblGRCm38mm10GRCm38
MGSCv37530,969,275 - 30,977,199 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36530,943,483 - 30,951,407 (+)NCBIMGSCv36mm8
Celera528,145,648 - 28,153,572 (+)NCBICelera
Cytogenetic Map5B1NCBI
cM Map516.76NCBI
Cenpa
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8631,420,062 - 31,431,703 (-)NCBIGRCr8
mRatBN7.2625,700,142 - 25,711,767 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl625,700,142 - 25,711,675 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx626,004,502 - 26,011,743 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0626,320,374 - 26,327,620 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0625,800,027 - 25,807,259 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0627,072,259 - 27,080,863 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl627,072,166 - 27,080,856 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0636,887,831 - 36,896,429 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4625,686,603 - 25,693,840 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera625,193,302 - 25,201,670 (-)NCBICelera
Cytogenetic Map6q14NCBI
Cenpa
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554698,799,071 - 8,819,876 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554698,799,312 - 8,819,637 (+)NCBIChiLan1.0ChiLan1.0
CENPA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11720,808,320 - 20,833,747 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1720,811,663 - 20,819,568 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1720,705,452 - 20,727,630 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01721,132,793 - 21,155,222 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1721,132,865 - 21,141,662 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11720,819,646 - 20,841,970 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01720,831,002 - 20,853,359 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01720,877,019 - 20,899,384 (+)NCBIUU_Cfam_GSD_1.0
Cenpa
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629265,118,691 - 65,128,436 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364935,714,782 - 5,720,837 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364935,715,274 - 5,720,816 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CENPA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3112,263,915 - 112,272,621 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13112,263,912 - 112,272,638 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23119,263,793 - 119,272,512 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CENPA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11480,838,049 - 80,847,609 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1480,839,335 - 80,846,608 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604531,298,072 - 31,307,015 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cenpa
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247388,899,362 - 8,906,373 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247388,899,260 - 8,906,379 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_034952804   ⟹   XP_034808695
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21299,717,635 - 99,728,838 (-)NCBI
NHGRI_mPanPan12A99,723,496 - 99,732,802 (-)NCBI
Mhudiblu_PPA_v02A26,785,310 - 26,794,282 (+)NCBI
RefSeq Acc Id: XM_034952805   ⟹   XP_034808696
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21299,717,635 - 99,728,841 (-)NCBI
NHGRI_mPanPan12A99,723,496 - 99,732,808 (-)NCBI
Mhudiblu_PPA_v02A26,785,301 - 26,793,884 (+)NCBI
RefSeq Acc Id: XR_004669757
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21299,713,881 - 99,728,838 (-)NCBI
NHGRI_mPanPan12A99,717,857 - 99,732,802 (-)NCBI
Mhudiblu_PPA_v02A26,785,310 - 26,800,178 (+)NCBI
RefSeq Acc Id: XR_004669758
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21299,713,897 - 99,728,838 (-)NCBI
NHGRI_mPanPan12A99,717,864 - 99,732,802 (-)NCBI
Mhudiblu_PPA_v02A26,785,310 - 26,800,152 (+)NCBI
RefSeq Acc Id: XR_004669760
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21299,717,635 - 99,728,838 (-)NCBI
NHGRI_mPanPan12A99,721,232 - 99,732,802 (-)NCBI
Mhudiblu_PPA_v02A26,785,310 - 26,794,920 (+)NCBI
RefSeq Acc Id: XR_010109306
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21299,713,897 - 99,728,838 (-)NCBI
RefSeq Acc Id: XR_010109307
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21299,717,635 - 99,728,841 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034808695 (Get FASTA)   NCBI Sequence Viewer  
  XP_034808696 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_034808696   ⟸   XM_034952805
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034808695   ⟸   XM_034952804
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
NCBI Gene CENPA ENTREZGENE