Trpv3 (transient receptor potential cation channel, subfamily V, member 3) - Rat Genome Database

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Gene: Trpv3 (transient receptor potential cation channel, subfamily V, member 3) Mus musculus
Analyze
Symbol: Trpv3
Name: transient receptor potential cation channel, subfamily V, member 3
RGD ID: 1557695
MGI Page MGI
Description: Enables monoatomic cation channel activity. Acts upstream of or within response to temperature stimulus. Located in membrane. Is expressed in central nervous system and sensory organ. Used to study atopic dermatitis. Human ortholog(s) of this gene implicated in colorectal cancer; congenital stationary night blindness; keratosis (multiple); migraine with aura; and schizophrenia. Orthologous to human TRPV3 (transient receptor potential cation channel subfamily V member 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110036I10Rik; AI644701; MGC124324; MGC124325; N; Nh; non-hair; transient receptor potential cation channel subfamily V member 3; TRP ion channel TRPV3; V; VRL3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391173,158,315 - 73,191,194 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1173,158,214 - 73,191,189 (+)EnsemblGRCm39 Ensembl
GRCm381173,267,489 - 73,300,368 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1173,267,388 - 73,300,363 (+)EnsemblGRCm38mm10GRCm38
MGSCv371173,081,122 - 73,110,702 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361173,083,815 - 73,113,395 (+)NCBIMGSCv36mm8
Celera1180,804,879 - 80,834,418 (+)NCBICelera
Cytogenetic Map11B4NCBI
cM Map1145.25NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(R)-camphor  (ISO)
1,2-dimethylhydrazine  (EXP)
1,2-naphthoquinone  (ISO)
1,4-naphthoquinone  (ISO)
1-naphthol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,3-Dicresol  (ISO)
2,4-di-tert-butylphenol  (ISO)
2,4-xylenol  (ISO)
2,5-xylenol  (ISO)
2,6-Dimethylphenol  (ISO)
2-cyclohexyl-2-phenylacetic acid 2-(diethylamino)ethyl ester  (ISO)
2-Ethylphenol  (ISO)
2-Methoxy-4-methylphenol  (ISO)
3,4-xylenol  (ISO)
3,5-xylenol  (ISO)
3-Ethylphenol  (ISO)
4-ethylphenol  (ISO)
6-propyl-2-thiouracil  (ISO)
Aflatoxin B2 alpha  (ISO)
alpha-Zearalanol  (ISO)
amphetamine  (ISO)
aristolochic acid A  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol F  (EXP)
calcium atom  (EXP,ISO)
calcium(0)  (EXP,ISO)
camphor  (ISO)
Cannabichromene  (EXP)
cannabidiol  (ISO)
Cannabidivarin  (ISO)
cannabigerolic acid  (ISO)
carvacrol  (EXP,ISO)
Diallyl sulfide  (ISO)
diazinon  (ISO)
dimethylarsinic acid  (EXP)
esketamine  (ISO)
ethyl vanillin  (EXP)
eugenol  (EXP,ISO)
genistein  (EXP)
gentamycin  (ISO)
ionomycin  (ISO)
isopentenyl diphosphate  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methapyrilene  (ISO)
methylarsonic acid  (EXP)
olanzapine  (EXP)
ozone  (EXP)
paracetamol  (ISO)
permethrin  (ISO)
pirinixic acid  (EXP)
ruthenium red  (EXP,ISO)
silicon dioxide  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (EXP,ISO)
sunitinib  (ISO)
thiram  (ISO)
thymol  (EXP,ISO)
thymol sulfate(1-)  (EXP,ISO)
titanium dioxide  (EXP)
trichloroethene  (ISO)
triphenyl phosphate  (ISO)
triptonide  (EXP)
valproic acid  (ISO)
vanillin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cilium  (IBA)
cytoplasm  (ISO,ISS)
lysosome  (ISO,ISS)
membrane  (IDA)
plasma membrane  (IBA,ISO,ISS)
receptor complex  (ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Association of a mutation in TRPV3 with defective hair growth in rodents. Asakawa M, etal., J Invest Dermatol. 2006 Dec;126(12):2664-72. doi: 10.1038/sj.jid.5700468. Epub 2006 Jul 20.
2. SNP variants within the vanilloid TRPV1 and TRPV3 receptor genes are associated with migraine in the Spanish population. Carreno O, etal., Am J Med Genet B Neuropsychiatr Genet. 2012 Jan;159B(1):94-103. doi: 10.1002/ajmg.b.32007. Epub 2011 Dec 7.
3. Polymorphisms in fatty-acid-metabolism-related genes are associated with colorectal cancer risk. Hoeft B, etal., Carcinogenesis. 2010 Mar;31(3):466-72. doi: 10.1093/carcin/bgp325. Epub 2009 Dec 30.
4. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
5. Recessive mutations of the gene TRPM1 abrogate ON bipolar cell function and cause complete congenital stationary night blindness in humans. Li Z, etal., Am J Hum Genet. 2009 Nov;85(5):711-9. doi: 10.1016/j.ajhg.2009.10.003. Epub 2009 Oct 29.
6. MGDs mouse GO annotations MGD data from the GO Consortium
7. MGD IEA MGD IEA
8. Protective effects of incensole acetate on cerebral ischemic injury. Moussaieff A, etal., Brain Res. 2012 Mar 14;1443:89-97. doi: 10.1016/j.brainres.2012.01.001. Epub 2012 Jan 9.
9. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
10. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
11. Mouse MP Annotation Import Pipeline RGD automated import pipeline
12. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
13. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
14. Multiple genes in the 15q13-q14 chromosomal region are associated with schizophrenia. Stephens SH, etal., Psychiatr Genet. 2012 Feb;22(1):1-14. doi: 10.1097/YPG.0b013e32834c0c33.
15. Distribution and expression of non-neuronal transient receptor potential (TRPV) ion channels in rosacea. Sulk M, etal., J Invest Dermatol. 2012 Apr;132(4):1253-62. doi: 10.1038/jid.2011.424. Epub 2011 Dec 22.
Additional References at PubMed
PMID:9250484   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12016205   PMID:12477932   PMID:12638241   PMID:12783886   PMID:14625409   PMID:15004014   PMID:15175387   PMID:15194687  
PMID:15722340   PMID:15746429   PMID:16141072   PMID:16141073   PMID:16460286   PMID:16602821   PMID:16617338   PMID:16827890   PMID:17313488   PMID:17706768   PMID:17888882   PMID:18178557  
PMID:18492727   PMID:18754035   PMID:19091963   PMID:19160498   PMID:19164517   PMID:19209153   PMID:19322198   PMID:19336223   PMID:19669158   PMID:19793539   PMID:19834762   PMID:19839244  
PMID:20064391   PMID:20403327   PMID:20413591   PMID:21586160   PMID:21712817   PMID:21873635   PMID:22475759   PMID:22622423   PMID:23382219   PMID:23536486   PMID:23555720   PMID:23625413  
PMID:23848361   PMID:24164484   PMID:24248473   PMID:24316078   PMID:24925072   PMID:25282159   PMID:25351988   PMID:25752528   PMID:25774551   PMID:26130157   PMID:26528923   PMID:26760212  
PMID:26843581   PMID:28515378   PMID:29054601   PMID:29094727   PMID:29175331   PMID:30037926   PMID:30108138   PMID:30127359   PMID:30644819   PMID:30842533   PMID:31308264   PMID:31636415  
PMID:31724952   PMID:31866822   PMID:31911949   PMID:32004565   PMID:32535744   PMID:32572254   PMID:33035568   PMID:33161279   PMID:33675791   PMID:33876725   PMID:33884443   PMID:33893234  
PMID:34239124   PMID:34313315   PMID:35361697   PMID:36499288   PMID:36690845   PMID:37474531   PMID:37855862   PMID:38099643   PMID:38365607   PMID:38648901   PMID:38777204  


Genomics

Comparative Map Data
Trpv3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391173,158,315 - 73,191,194 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1173,158,214 - 73,191,189 (+)EnsemblGRCm39 Ensembl
GRCm381173,267,489 - 73,300,368 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1173,267,388 - 73,300,363 (+)EnsemblGRCm38mm10GRCm38
MGSCv371173,081,122 - 73,110,702 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361173,083,815 - 73,113,395 (+)NCBIMGSCv36mm8
Celera1180,804,879 - 80,834,418 (+)NCBICelera
Cytogenetic Map11B4NCBI
cM Map1145.25NCBI
TRPV3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38173,510,502 - 3,557,812 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl173,510,502 - 3,557,812 (-)EnsemblGRCh38hg38GRCh38
GRCh37173,413,796 - 3,461,106 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36173,363,236 - 3,408,039 (-)NCBINCBI36Build 36hg18NCBI36
Build 34173,363,235 - 3,408,039NCBI
Celera173,430,192 - 3,475,028 (-)NCBICelera
Cytogenetic Map17p13.2NCBI
HuRef173,305,340 - 3,352,994 (-)NCBIHuRef
CHM1_1173,424,206 - 3,472,113 (-)NCBICHM1_1
T2T-CHM13v2.0173,399,413 - 3,446,868 (-)NCBIT2T-CHM13v2.0
Trpv3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81058,382,054 - 58,413,657 (+)NCBIGRCr8
mRatBN7.21057,883,546 - 57,915,865 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1057,883,546 - 57,913,296 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1062,539,748 - 62,569,511 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01062,028,216 - 62,057,979 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01057,527,346 - 57,557,111 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01059,829,755 - 59,863,780 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1059,831,241 - 59,860,987 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01059,570,474 - 59,600,221 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41060,126,243 - 60,171,718 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1057,006,489 - 57,036,234 (+)NCBICelera
Cytogenetic Map10q24NCBI
Trpv3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546713,248,599 - 13,276,718 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546713,246,099 - 13,276,741 (+)NCBIChiLan1.0ChiLan1.0
TRPV3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21911,119,398 - 11,157,312 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11713,085,828 - 13,123,397 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0173,528,734 - 3,577,162 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1173,516,209 - 3,603,787 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl173,516,209 - 3,603,787 (-)Ensemblpanpan1.1panPan2
TRPV3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1947,365,275 - 47,398,198 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl947,368,544 - 47,401,362 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha946,528,079 - 46,563,685 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0948,209,963 - 48,245,709 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl948,213,257 - 48,242,979 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1946,982,521 - 47,018,152 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0947,274,342 - 47,311,364 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0947,331,441 - 47,367,082 (-)NCBIUU_Cfam_GSD_1.0
Trpv3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560255,630,463 - 55,663,973 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936677239,435 - 270,512 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936677239,133 - 270,512 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRPV3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1249,635,927 - 49,671,613 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11249,638,852 - 49,671,671 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21251,498,820 - 51,529,161 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103242154
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1162,975,771 - 3,062,952 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl163,019,602 - 3,059,594 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605918,770,240 - 18,816,909 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trpv3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247866,194,638 - 6,221,887 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247866,191,463 - 6,224,435 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Trpv3
113 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1255
Count of miRNA genes:610
Interacting mature miRNAs:785
Transcripts:ENSMUST00000049676
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170691198104691366Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170691198104691366Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115849055574754758Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172726125106726289Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172818615106818733Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170691198104691366Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172818615106818733Mouse
1301078Alcp2_malcohol preference locus 2 (mouse)Not determined117220979684731462Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116707819179813912Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116331940781830473Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116331940794063918Mouse

Markers in Region
AI644701  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381173,300,251 - 73,300,337UniSTSGRCm38
MGSCv371173,113,753 - 73,113,839UniSTSGRCm37
Celera1180,837,468 - 80,837,554UniSTS
Cytogenetic Map11B4UniSTS
cM Map1140.6UniSTS
Whitehead/MRC_RH11930.07UniSTS
Trpv3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381173,300,103 - 73,300,223UniSTSGRCm38
MGSCv371173,113,605 - 73,113,725UniSTSGRCm37
Celera1180,837,320 - 80,837,440UniSTS
Cytogenetic Map11B4UniSTS
cM Map1145.25UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000049676   ⟹   ENSMUSP00000053755
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1173,158,214 - 73,191,189 (+)Ensembl
GRCm38.p6 Ensembl1173,267,388 - 73,300,363 (+)Ensembl
RefSeq Acc Id: NM_001371006   ⟹   NP_001357935
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391173,158,346 - 73,191,194 (+)NCBI
GRCm381173,267,520 - 73,300,368 (+)NCBI
Sequence:
RefSeq Acc Id: NM_145099   ⟹   NP_659567
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391173,158,346 - 73,191,194 (+)NCBI
GRCm381173,267,520 - 73,300,368 (+)NCBI
MGSCv371173,081,122 - 73,110,702 (+)RGD
Celera1180,804,879 - 80,834,418 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_163834
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391173,158,346 - 73,191,194 (+)NCBI
GRCm381173,267,520 - 73,300,368 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006533348   ⟹   XP_006533411
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391173,158,315 - 73,186,042 (+)NCBI
GRCm381173,267,489 - 73,295,216 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004936963
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391173,158,315 - 73,191,194 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001357935 (Get FASTA)   NCBI Sequence Viewer  
  NP_659567 (Get FASTA)   NCBI Sequence Viewer  
  XP_006533411 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI08985 (Get FASTA)   NCBI Sequence Viewer  
  AAM33069 (Get FASTA)   NCBI Sequence Viewer  
  BAJ22803 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000053755
  ENSMUSP00000053755.3
GenBank Protein Q8K424 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_659567   ⟸   NM_145099
- Peptide Label: isoform 1
- UniProtKB: Q5SV08 (UniProtKB/Swiss-Prot),   Q8K424 (UniProtKB/Swiss-Prot),   Q32MT9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006533411   ⟸   XM_006533348
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001357935   ⟸   NM_001371006
- Peptide Label: isoform 2
- UniProtKB: Q32MT9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000053755   ⟸   ENSMUST00000049676
Protein Domains
Ion transport

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8K424-F1-model_v2 AlphaFold Q8K424 1-791 view protein structure

Promoters
RGD ID:8675486
Promoter ID:EPDNEW_M15774
Type:multiple initiation site
Name:Trpv3_1
Description:Mus musculus transient receptor potential cation channel, subfamilyV, member 3 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381173,267,520 - 73,267,580EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2181407 AgrOrtholog
Ensembl Genes ENSMUSG00000043029 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000049676 ENTREZGENE
  ENSMUST00000049676.3 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.287.70 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.25.40.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ion_trans_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRPV UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRPV1-4_channel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:246788 UniProtKB/Swiss-Prot
MGD MGI:2181407 ENTREZGENE
NCBI Gene 246788 ENTREZGENE
PANTHER PTHR10582 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10582:SF6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ank UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ank_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ion_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Trpv3 PhenoGen
PRINTS TRPVRECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ANK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt E2RUG8_MOUSE UniProtKB/TrEMBL
  Q32MT9 ENTREZGENE, UniProtKB/TrEMBL
  Q5SV08 ENTREZGENE
  Q8K424 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q5SV08 UniProtKB/Swiss-Prot