Ttyh2 (tweety family member 2) - Rat Genome Database

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Gene: Ttyh2 (tweety family member 2) Mus musculus
Analyze
Symbol: Ttyh2
Name: tweety family member 2
RGD ID: 1557354
MGI Page MGI
Description: Enables calcium ion binding activity and volume-sensitive chloride channel activity. Involved in L-glutamate transmembrane transport. Located in plasma membrane. Is expressed in several structures, including adrenal gland; central nervous system; olfactory epithelium; retina layer; and submandibular gland primordium mesenchyme. Orthologous to human TTYH2 (tweety family member 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110001A03Rik; mTTY2; protein tweety homolog 2; tweety homolog 2; volume-regulated anion channel subunit Ttyh2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911114,566,294 - 114,611,810 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11114,566,257 - 114,611,803 (+)EnsemblGRCm39 Ensembl
GRCm3811114,675,468 - 114,720,984 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11114,675,431 - 114,720,977 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711114,536,782 - 114,582,298 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611114,491,558 - 114,537,074 (+)NCBIMGSCv36mm8
Celera11126,434,785 - 126,481,284 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1179.85NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (ISO)
acrylamide  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (ISO)
amosite asbestos  (ISO)
aristolochic acid A  (ISO)
benzatropine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (ISO)
beta-lapachone  (ISO)
bisphenol A  (ISO)
C60 fullerene  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
cisplatin  (ISO)
clozapine  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (ISO)
cyclosporin A  (EXP)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
entinostat  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP)
fenamidone  (EXP)
fenthion  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
gentamycin  (ISO)
lipopolysaccharide  (ISO)
methapyrilene  (ISO)
methidathion  (EXP)
methimazole  (ISO)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
nefazodone  (ISO)
nimesulide  (ISO)
Nutlin-3  (ISO)
paracetamol  (ISO)
phenylmercury acetate  (ISO)
propanal  (ISO)
propiconazole  (EXP)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (EXP,ISO)
sulfadimethoxine  (ISO)
sunitinib  (ISO)
testosterone  (EXP)
tetrachloromethane  (ISO)
thimerosal  (ISO)
titanium dioxide  (EXP)
trichloroethene  (ISO)
triphenyl phosphate  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chloride channel complex  (IEA)
membrane  (ISS)
plasma membrane  (IBA,IDA,IMP,ISO)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11597145   PMID:12477932   PMID:14610273   PMID:15226823   PMID:15782199   PMID:16141072   PMID:16141073   PMID:17967808  
PMID:18799693   PMID:21267068   PMID:21873635   PMID:28698213   PMID:31138989   PMID:34824283   PMID:36042377  


Genomics

Comparative Map Data
Ttyh2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911114,566,294 - 114,611,810 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11114,566,257 - 114,611,803 (+)EnsemblGRCm39 Ensembl
GRCm3811114,675,468 - 114,720,984 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11114,675,431 - 114,720,977 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711114,536,782 - 114,582,298 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611114,491,558 - 114,537,074 (+)NCBIMGSCv36mm8
Celera11126,434,785 - 126,481,284 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1179.85NCBI
TTYH2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381774,213,571 - 74,262,020 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1774,213,571 - 74,262,020 (+)EnsemblGRCh38hg38GRCh38
GRCh371772,209,710 - 72,258,159 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361769,721,291 - 69,769,754 (+)NCBINCBI36Build 36hg18NCBI36
Build 341769,756,099 - 69,769,750NCBI
Celera1768,796,241 - 68,850,209 (+)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1767,620,155 - 67,668,483 (+)NCBIHuRef
CHM1_11772,274,323 - 72,322,720 (+)NCBICHM1_1
T2T-CHM13v2.01775,104,409 - 75,152,817 (+)NCBIT2T-CHM13v2.0
Ttyh2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810100,208,129 - 100,252,505 (+)NCBIGRCr8
mRatBN7.21099,709,063 - 99,753,449 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1099,709,007 - 99,753,444 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10104,767,015 - 104,811,823 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010104,230,134 - 104,274,937 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01099,630,130 - 99,674,500 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010103,206,085 - 103,248,911 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10103,206,014 - 103,248,862 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010102,865,658 - 102,908,420 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410104,553,284 - 104,596,673 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1098,313,869 - 98,344,814 (+)NCBICelera
Cytogenetic Map10q32.1NCBI
Ttyh2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555531,137,762 - 1,179,195 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555531,137,762 - 1,179,195 (+)NCBIChiLan1.0ChiLan1.0
TTYH2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21990,244,278 - 90,292,730 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11795,066,716 - 95,115,130 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01768,152,290 - 68,200,690 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11773,710,144 - 73,758,546 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1773,710,144 - 73,758,546 (+)Ensemblpanpan1.1panPan2
TTYH2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.196,120,586 - 6,156,956 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl96,120,575 - 6,156,957 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha96,742,365 - 6,778,896 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.096,792,981 - 6,829,555 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl96,792,986 - 6,829,564 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.196,833,458 - 6,870,176 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.096,936,998 - 6,973,531 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.096,996,992 - 7,033,550 (-)NCBIUU_Cfam_GSD_1.0
Ttyh2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056026,707,938 - 6,733,543 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936655205,774 - 231,342 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936655205,761 - 231,357 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TTYH2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl126,838,425 - 6,881,472 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1126,838,420 - 6,881,562 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2126,865,496 - 6,908,598 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TTYH2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11647,372,879 - 47,421,471 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1647,372,897 - 47,421,435 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607718,187,232 - 18,235,971 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ttyh2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248014,200,102 - 4,241,332 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248014,200,038 - 4,242,906 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ttyh2
1677 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:834
Count of miRNA genes:477
Interacting mature miRNAs:576
Transcripts:ENSMUST00000045779, ENSMUST00000141111
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195403965121973369Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182377698116377820Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1301012Vispl_mvisual placing (mouse)Not determined11101022590121973369Mouse
1301983Berr2_mberghei resistance locus 2 (mouse)Not determined1198352609121973369Mouse
4141939Pregq2_mpregnancy QTL 2 (mouse)Not determined1194063779118022724Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181574481115574636Mouse
10043976Obq33_mobesity QTL 33 (mouse)Not determined1198500469121973369Mouse
1301057Nidd4_mnon-insulin-dependent diabetes mellitus 4 (mouse)Not determined1196810136121973369Mouse
4141612Cia40_mcollagen induced arthritis 40 (mouse)Not determined11103273992115021444Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195403965121973369Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185844911119844911Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181810267115810267Mouse
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189869251121973369Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186608320120608320Mouse
4141465Dbm2_mdiabetes modifier 2 (mouse)Not determined94437183118022724Mouse
15039374Adip29_madiposity 29 (mouse)1186608320120608320Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196137674121973369Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193229183121973369Mouse
11341721Rvfs2_mRift Valley fever susceptibility 2 (mouse)11100254186120887165Mouse
27226731Tibmd4_mtibia midshaft diameter 4, 10 week (mouse)1194190826118890826Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186608320120608320Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191604608121973369Mouse
10044001Alcw8_malcohol withdrawal 8 (mouse)Not determined1199254187121973369Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181574481115574636Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
11553867Stmm5_mskin tumor modifier of MSM 5 (mouse)11100058103121973369Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_053273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF329682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL663079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY352523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY731753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY740853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000045779   ⟹   ENSMUSP00000037821
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11114,566,257 - 114,611,803 (+)Ensembl
GRCm38.p6 Ensembl11114,675,431 - 114,720,977 (+)Ensembl
Ensembl Acc Id: ENSMUST00000141111
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11114,566,342 - 114,581,429 (+)Ensembl
GRCm38.p6 Ensembl11114,675,516 - 114,690,603 (+)Ensembl
RefSeq Acc Id: NM_053273   ⟹   NP_444503
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911114,566,294 - 114,611,810 (+)NCBI
GRCm3811114,675,468 - 114,720,984 (+)ENTREZGENE
MGSCv3711114,536,782 - 114,582,298 (+)RGD
Celera11126,434,785 - 126,481,284 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_444503   ⟸   NM_053273
- UniProtKB: Q6P9J3 (UniProtKB/Swiss-Prot),   Q3U8L3 (UniProtKB/Swiss-Prot),   Q3U103 (UniProtKB/Swiss-Prot),   Q920A8 (UniProtKB/Swiss-Prot),   Q3TH73 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000037821   ⟸   ENSMUST00000045779

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3TH73-F1-model_v2 AlphaFold Q3TH73 1-532 view protein structure

Promoters
RGD ID:6822399
Promoter ID:MM_KWN:10474
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000100242,   OTTMUST00000007222,   OTTMUST00000007223
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611114,535,821 - 114,536,952 (+)MPROMDB
RGD ID:8677276
Promoter ID:EPDNEW_M16668
Type:initiation region
Name:Ttyh2_1
Description:Mus musculus tweety family member 2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811114,675,489 - 114,675,549EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2157091 AgrOrtholog
Ensembl Genes ENSMUSG00000034714 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000045779 ENTREZGENE
  ENSMUST00000045779.6 UniProtKB/Swiss-Prot
InterPro Tweety UniProtKB/Swiss-Prot
KEGG Report mmu:117160 UniProtKB/Swiss-Prot
MGD MGI:2157091 ENTREZGENE
NCBI Gene 117160 ENTREZGENE
PANTHER PROTEIN TWEETY HOMOLOG 2 UniProtKB/Swiss-Prot
  PTHR12424 UniProtKB/Swiss-Prot
Pfam Tweety UniProtKB/Swiss-Prot
PhenoGen Ttyh2 PhenoGen
UniProt Q3TH73 ENTREZGENE
  Q3U103 ENTREZGENE
  Q3U8L3 ENTREZGENE
  Q6P9J3 ENTREZGENE
  Q920A8 ENTREZGENE
  TTYH2_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q3U103 UniProtKB/Swiss-Prot
  Q3U8L3 UniProtKB/Swiss-Prot
  Q6P9J3 UniProtKB/Swiss-Prot
  Q920A8 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-14 Ttyh2  tweety family member 2    tweety homolog 2 (Drosophila)  Symbol and/or name change 5135510 APPROVED