Zer1 (zyg-11 related, cell cycle regulator) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Zer1 (zyg-11 related, cell cycle regulator) Mus musculus
Analyze
Symbol: Zer1
Name: zyg-11 related, cell cycle regulator
RGD ID: 1553660
MGI Page MGI
Description: Predicted to be involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process and protein quality control for misfolded or incompletely synthesized proteins. Predicted to be part of Cul2-RING ubiquitin ligase complex. Is expressed in central nervous system and retina. Orthologous to human ZER1 (zyg-11 related cell cycle regulator).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: C230075L19Rik; zer-1 homolog; zyg-11 homolog B-like protein; Zyg11b; Zyg11bl
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39229,987,295 - 30,016,299 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl229,987,295 - 30,014,597 (-)EnsemblGRCm39 Ensembl
GRCm38230,097,283 - 30,126,287 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl230,097,283 - 30,124,585 (-)EnsemblGRCm38mm10GRCm38
MGSCv37229,952,803 - 29,979,974 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36229,919,292 - 29,946,463 (-)NCBIMGSCv36mm8
Celera229,800,800 - 29,827,973 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map221.16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:16602821   PMID:18799693  
PMID:21267068   PMID:21873635   PMID:32325033   PMID:38355793  


Genomics

Comparative Map Data
Zer1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39229,987,295 - 30,016,299 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl229,987,295 - 30,014,597 (-)EnsemblGRCm39 Ensembl
GRCm38230,097,283 - 30,126,287 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl230,097,283 - 30,124,585 (-)EnsemblGRCm38mm10GRCm38
MGSCv37229,952,803 - 29,979,974 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36229,919,292 - 29,946,463 (-)NCBIMGSCv36mm8
Celera229,800,800 - 29,827,973 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map221.16NCBI
ZER1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389128,729,786 - 128,772,486 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9128,729,786 - 128,772,414 (-)EnsemblGRCh38hg38GRCh38
GRCh379131,492,065 - 131,534,765 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369130,531,886 - 130,574,019 (-)NCBINCBI36Build 36hg18NCBI36
Build 349128,571,619 - 128,613,752NCBI
Celera9102,142,849 - 102,184,970 (-)NCBICelera
Cytogenetic Map9q34.11NCBI
HuRef9101,101,396 - 101,143,207 (-)NCBIHuRef
CHM1_19131,643,031 - 131,685,172 (-)NCBICHM1_1
T2T-CHM13v2.09140,934,550 - 140,977,266 (-)NCBIT2T-CHM13v2.0
Zer1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8333,767,520 - 33,806,716 (-)NCBIGRCr8
mRatBN7.2313,369,688 - 13,397,524 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl313,369,688 - 13,397,420 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx316,444,349 - 16,472,223 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0325,029,315 - 25,057,189 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0323,279,906 - 23,307,760 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.038,662,579 - 8,690,486 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl38,662,579 - 8,690,305 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0314,014,737 - 14,042,632 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.439,102,502 - 9,118,423 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.139,102,801 - 9,130,537 (-)NCBI
Celera38,143,197 - 8,170,925 (-)NCBICelera
Cytogenetic Map3p12NCBI
Zer1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555701,138,477 - 1,152,198 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555701,138,477 - 1,153,246 (-)NCBIChiLan1.0ChiLan1.0
ZER1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21110,578,962 - 10,620,951 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1910,581,310 - 10,623,301 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0999,853,433 - 99,895,399 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19128,519,972 - 128,560,107 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9128,519,972 - 128,560,098 (-)Ensemblpanpan1.1panPan2
ZER1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1954,842,607 - 54,873,336 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl954,842,317 - 54,871,717 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha954,038,038 - 54,068,779 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0955,763,691 - 55,794,421 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl955,763,715 - 55,794,421 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1954,524,306 - 54,555,013 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0954,836,989 - 54,867,669 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0954,930,434 - 54,961,182 (+)NCBIUU_Cfam_GSD_1.0
Zer1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947196,442,211 - 196,471,977 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648716,210,707 - 16,239,660 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648716,210,738 - 16,239,686 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZER1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1269,090,159 - 269,108,256 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11269,088,696 - 269,121,895 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21303,108,885 - 303,142,096 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZER1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1129,371,038 - 9,413,127 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl129,371,701 - 9,413,134 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366609653,876 - 98,048 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zer1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247606,247,052 - 6,270,621 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247606,247,016 - 6,270,621 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2855
Count of miRNA genes:742
Interacting mature miRNAs:952
Transcripts:ENSMUST00000044751, ENSMUST00000113677, ENSMUST00000131858, ENSMUST00000133354, ENSMUST00000139128, ENSMUST00000149818, ENSMUST00000152068, ENSMUST00000152285, ENSMUST00000154231
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552706Cia24_mcollagen induced arthritis QTL 24 (mouse)Not determined22467911533523172Mouse
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
12904005Cfq2_mconditioned fear QTL 2 (mouse)22702264256396228Mouse
14746979Manh51_mmandible shape 51 (mouse)22896112962961129Mouse
1300624Insq7_minsulin QTL 7 (mouse)Not determined2938444643384575Mouse
8552705Cia25_mcollagen induced arthritis 25 (mouse)Not determined22467911533523172Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
26884438Sklq12_mskull length QTL 12, 16 week (mouse)22459001254890012Mouse
1301790Pcfm1_mperiosteal circumference and femur length 1 (mouse)Not determined2823629642236396Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
4142130Pgis2_mproteoglycan induced spondylitis 2 (mouse)Not determined22530805156971811Mouse
1301980Fcsa5_mfemoral cross-sectional area 5 (mouse)Not determined2767911541679261Mouse
1301376Etohc1_methanol consumption 1 (mouse)Not determined22112972555129871Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
14746997Mancz2_mmandible centroid size 2 (mouse)22896112962961129Mouse
12792980Fbmd1_mfemoral bone mineral density 1, females only (mouse)22503449245034492Mouse
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1301641Sbmd2_mspinal bone mineral density 2 (mouse)Not determined21421456748214713Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
10755513Amzn4_manatomical modifier of Zfp423 4 (mouse)2938444643384575Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
13463470Tubisq1_mtubulointerstitial injury severity, QTL 1 (mouse)22368914557689269Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1300577Capsq1_mcapsaicin sensitivity related QTL 1 (mouse)Not determined22760206084013384Mouse
4141708Pbwg1.2_mpostnatal body weight growth 1.2 (mouse)Not determined2112972555129871Mouse
10043876Adip22_madiposity 22 (mouse)Not determined2830805142308240Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001290503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_178694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017317305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017317313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017317318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC091519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL845258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC048924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC057021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX005298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY749660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000044751   ⟹   ENSMUSP00000046441
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl229,987,295 - 30,014,466 (-)Ensembl
GRCm38.p6 Ensembl230,097,283 - 30,124,454 (-)Ensembl
Ensembl Acc Id: ENSMUST00000113677   ⟹   ENSMUSP00000109307
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl229,987,295 - 30,014,594 (-)Ensembl
GRCm38.p6 Ensembl230,097,283 - 30,124,582 (-)Ensembl
Ensembl Acc Id: ENSMUST00000131858
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl229,997,189 - 29,997,654 (-)Ensembl
GRCm38.p6 Ensembl230,107,177 - 30,107,642 (-)Ensembl
Ensembl Acc Id: ENSMUST00000133354
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl229,995,581 - 30,014,591 (-)Ensembl
GRCm38.p6 Ensembl230,105,569 - 30,124,579 (-)Ensembl
Ensembl Acc Id: ENSMUST00000139128
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl229,996,812 - 30,000,785 (-)Ensembl
GRCm38.p6 Ensembl230,106,800 - 30,110,773 (-)Ensembl
Ensembl Acc Id: ENSMUST00000149818
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl229,997,527 - 29,998,554 (-)Ensembl
GRCm38.p6 Ensembl230,107,515 - 30,108,542 (-)Ensembl
Ensembl Acc Id: ENSMUST00000152068
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl229,990,470 - 29,992,753 (-)Ensembl
GRCm38.p6 Ensembl230,100,458 - 30,102,741 (-)Ensembl
Ensembl Acc Id: ENSMUST00000152285
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl229,989,814 - 29,991,784 (-)Ensembl
GRCm38.p6 Ensembl230,099,802 - 30,101,772 (-)Ensembl
Ensembl Acc Id: ENSMUST00000154231
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl229,995,320 - 30,014,597 (-)Ensembl
GRCm38.p6 Ensembl230,105,308 - 30,124,585 (-)Ensembl
RefSeq Acc Id: NM_001290503   ⟹   NP_001277432
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39229,987,295 - 30,014,623 (-)NCBI
GRCm38230,097,283 - 30,124,611 (-)NCBI
Celera229,800,800 - 29,828,130 (-)NCBI
Sequence:
RefSeq Acc Id: NM_178694   ⟹   NP_848809
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39229,987,295 - 30,014,623 (-)NCBI
GRCm38230,097,283 - 30,124,611 (-)NCBI
MGSCv37229,952,803 - 29,979,974 (-)RGD
Celera229,800,800 - 29,828,130 (-)NCBI
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006497928   ⟹   XP_006497991
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39229,987,295 - 30,016,299 (-)NCBI
GRCm38230,097,285 - 30,126,287 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017317305   ⟹   XP_017172794
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39229,987,295 - 30,016,299 (-)NCBI
GRCm38230,097,285 - 30,126,287 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017317313   ⟹   XP_017172802
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39229,987,295 - 30,016,299 (-)NCBI
GRCm38230,097,285 - 30,126,287 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017317318   ⟹   XP_017172807
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39229,996,744 - 30,016,299 (-)NCBI
GRCm38230,106,732 - 30,126,287 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160808   ⟹   XP_036016701
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39229,987,295 - 30,016,299 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160810   ⟹   XP_036016703
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39229,987,295 - 30,016,299 (-)NCBI
Sequence:
RefSeq Acc Id: NP_848809   ⟸   NM_178694
- Peptide Label: isoform a
- UniProtKB: Q6PGH5 (UniProtKB/Swiss-Prot),   A2BEA2 (UniProtKB/Swiss-Prot),   Q8BG38 (UniProtKB/Swiss-Prot),   Q80ZJ6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006497991   ⟸   XM_006497928
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001277432   ⟸   NM_001290503
- Peptide Label: isoform b
- UniProtKB: Q3U297 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017172794   ⟸   XM_017317305
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017172802   ⟸   XM_017317313
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017172807   ⟸   XM_017317318
- Peptide Label: isoform X4
- Sequence:
Ensembl Acc Id: ENSMUSP00000109307   ⟸   ENSMUST00000113677
Ensembl Acc Id: ENSMUSP00000046441   ⟸   ENSMUST00000044751
RefSeq Acc Id: XP_036016703   ⟸   XM_036160810
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036016701   ⟸   XM_036160808
- Peptide Label: isoform X2
- UniProtKB: Q3U297 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q80ZJ6-F1-model_v2 AlphaFold Q80ZJ6 1-779 view protein structure

Promoters
RGD ID:6833110
Promoter ID:MM_KWN:28496
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Lung
Transcripts:OTTMUST00000040608
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36229,956,744 - 29,957,244 (-)MPROMDB
RGD ID:6833109
Promoter ID:MM_KWN:28497
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney
Transcripts:OTTMUST00000040607
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36229,958,616 - 29,959,167 (-)MPROMDB
RGD ID:6833108
Promoter ID:MM_KWN:28498
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000040606
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36229,962,866 - 29,963,366 (-)MPROMDB
RGD ID:6833107
Promoter ID:MM_KWN:28499
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Lung
Transcripts:OTTMUST00000040605
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36229,963,519 - 29,964,019 (-)MPROMDB
RGD ID:6833105
Promoter ID:MM_KWN:28500
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Lung
Transcripts:OTTMUST00000040604
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36229,966,069 - 29,966,569 (-)MPROMDB
RGD ID:6876872
Promoter ID:EPDNEW_M1887
Type:initiation region
Name:Zer1_1
Description:Mus musculus zyg-11 related, cell cycle regulator , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38230,124,563 - 30,124,623EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2442511 AgrOrtholog
Ensembl Genes ENSMUSG00000039686 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000044751 ENTREZGENE
  ENSMUST00000044751.14 UniProtKB/Swiss-Prot
  ENSMUST00000113677 ENTREZGENE
  ENSMUST00000113677.3 UniProtKB/Swiss-Prot
Gene3D-CATH 1.25.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Armadillo UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Zyg-11_UBL_adapter UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:227693 UniProtKB/Swiss-Prot
MGD MGI:2442511 ENTREZGENE
NCBI Gene 227693 ENTREZGENE
PANTHER PROTEIN ZER-1 HOMOLOG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12904 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ZER1-like_2nd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Zer1 PhenoGen
SMART ARM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP RNI-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48371 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2BEA2 ENTREZGENE
  Q3U297 ENTREZGENE, UniProtKB/TrEMBL
  Q3V3U7_MOUSE UniProtKB/TrEMBL
  Q6PGH5 ENTREZGENE
  Q80ZJ6 ENTREZGENE
  Q8BG38 ENTREZGENE
  ZER1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary A2BEA2 UniProtKB/Swiss-Prot
  Q6PGH5 UniProtKB/Swiss-Prot
  Q8BG38 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-01-08 Zer1  zyg-11 related, cell cycle regulator    zer-1 homolog (C. elegans)  Symbol and/or name change 5135510 APPROVED