Sgce (sarcoglycan, epsilon) - Rat Genome Database

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Gene: Sgce (sarcoglycan, epsilon) Mus musculus
Analyze
Symbol: Sgce
Name: sarcoglycan, epsilon
RGD ID: 1553181
MGI Page MGI
Description: Located in Golgi apparatus and dendrite membrane. Part of sarcoglycan complex. Is expressed in several structures, including extraembryonic component; heart; liver; lung; and placenta. Used to study myoclonic dystonia 11. Human ortholog(s) of this gene implicated in myoclonic dystonia 11. Orthologous to human SGCE (sarcoglycan epsilon).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: e-S; e-SG; epsilon-sarcoglycan; epsilon-SG
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3964,674,350 - 4,747,180 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl64,674,350 - 4,747,207 (-)EnsemblGRCm39 Ensembl
GRCm3864,674,350 - 4,747,204 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl64,674,350 - 4,747,207 (-)EnsemblGRCm38mm10GRCm38
MGSCv3764,624,350 - 4,697,204 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3664,624,350 - 4,697,099 (-)NCBIMGSCv36mm8
Celera64,817,452 - 4,890,164 (-)NCBICelera
Cytogenetic Map6A1NCBI
cM Map61.81NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Identification of a prognostic 5-Gene expression signature for gastric cancer. Hou JY, etal., J Cancer Res Clin Oncol. 2017 Apr;143(4):619-629. doi: 10.1007/s00432-016-2324-z. Epub 2016 Dec 29.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Cloning, developmental regulation and neural localization of rat epsilon-sarcoglycan. Xiao J and LeDoux MS, Brain Res Mol Brain Res 2003 Nov 26;119(2):132-43.
Additional References at PubMed
PMID:8889548   PMID:9405466   PMID:9475163   PMID:10349636   PMID:10481911   PMID:10488149   PMID:10757814   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12840045  
PMID:14610273   PMID:15193417   PMID:15612018   PMID:15689353   PMID:15782199   PMID:16099459   PMID:16141072   PMID:16141073   PMID:16341224   PMID:16602821   PMID:16815860   PMID:16987518  
PMID:17200151   PMID:18480470   PMID:19494113   PMID:20627944   PMID:21750040   PMID:21796726   PMID:21873635   PMID:21890494   PMID:22040906   PMID:22080833   PMID:23085235   PMID:23139813  
PMID:24291790   PMID:27565344   PMID:27890709   PMID:28823931   PMID:30995482   PMID:32492419   PMID:38324473   PMID:38355793  


Genomics

Comparative Map Data
Sgce
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3964,674,350 - 4,747,180 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl64,674,350 - 4,747,207 (-)EnsemblGRCm39 Ensembl
GRCm3864,674,350 - 4,747,204 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl64,674,350 - 4,747,207 (-)EnsemblGRCm38mm10GRCm38
MGSCv3764,624,350 - 4,697,204 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3664,624,350 - 4,697,099 (-)NCBIMGSCv36mm8
Celera64,817,452 - 4,890,164 (-)NCBICelera
Cytogenetic Map6A1NCBI
cM Map61.81NCBI
SGCE
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38794,584,980 - 94,656,133 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl794,524,204 - 94,656,572 (-)EnsemblGRCh38hg38GRCh38
GRCh37794,214,292 - 94,285,445 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36794,052,472 - 94,123,457 (-)NCBINCBI36Build 36hg18NCBI36
Build 34793,859,192 - 93,930,129NCBI
Celera788,912,778 - 88,983,736 (-)NCBICelera
Cytogenetic Map7q21.3NCBI
HuRef788,821,910 - 88,892,855 (-)NCBIHuRef
CHM1_1794,144,608 - 94,215,565 (-)NCBICHM1_1
T2T-CHM13v2.0795,820,944 - 95,892,057 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2793,543,689 - 93,614,670 (-)NCBI
Sgce
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8433,738,066 - 33,808,907 (-)NCBIGRCr8
mRatBN7.2432,771,477 - 32,842,238 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl432,771,477 - 32,842,254 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx437,734,525 - 37,805,283 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0433,660,647 - 33,731,410 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0432,066,413 - 32,137,152 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0429,726,140 - 29,769,902 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl429,726,146 - 29,778,039 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0429,634,749 - 29,678,914 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera428,302,370 - 28,347,652 (-)NCBICelera
Cytogenetic Map4q21NCBI
Sgce
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543211,310,129 - 11,383,803 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543211,310,488 - 11,383,803 (-)NCBIChiLan1.0ChiLan1.0
SGCE
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26112,422,961 - 112,493,987 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17160,687,603 - 160,758,569 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0786,535,215 - 86,606,114 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17100,125,064 - 100,195,529 (-)NCBIpanpan1.1PanPan1.1panPan2
SGCE
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11420,052,778 - 20,121,252 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1420,052,776 - 20,121,193 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1419,612,107 - 19,680,546 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01419,868,233 - 19,936,707 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1419,868,231 - 19,936,661 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11420,019,938 - 20,088,381 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01419,754,979 - 19,823,672 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01420,012,325 - 20,081,034 (-)NCBIUU_Cfam_GSD_1.0
Sgce
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511833,342,895 - 33,411,936 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365855,450,888 - 5,522,571 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365855,451,312 - 5,520,391 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SGCE
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl974,402,717 - 74,473,910 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1974,402,714 - 74,473,904 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2981,600,726 - 81,642,852 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SGCE
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12154,385,253 - 54,456,685 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2154,385,262 - 54,457,302 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604249,866,278 - 49,937,709 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sgce
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248131,357,927 - 1,432,381 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248131,361,764 - 1,431,889 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sgce
3309 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1186
Count of miRNA genes:432
Interacting mature miRNAs:499
Transcripts:ENSMUST00000004750, ENSMUST00000090686, ENSMUST00000101677, ENSMUST00000115577, ENSMUST00000115579, ENSMUST00000123907, ENSMUST00000126151, ENSMUST00000128109, ENSMUST00000130428, ENSMUST00000133306, ENSMUST00000139029, ENSMUST00000153284
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396633110Mouse
11353836Bmiq1_mbody mass index QTL 1 (mouse)6450382329751333Mouse
1357520Axtq2_manxiety QTL 2 (mouse)Not determined6450382348703611Mouse
14746985Manh59_mmandible shape 59 (mouse)6120847193Mouse
14700782Syncq6_msynovial calcification QTL 6 (mouse)641770005219000Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396633110Mouse
1301131Chol2_mcholesterol 2 (mouse)Not determined6132144495Mouse
1302024Skull7_mskull morphology 7 (mouse)Not determined6132144495Mouse
11353841Bmiq3_mbody mass index QTL 3 (mouse)6450382348703611Mouse
11353840Bmiq2_mbody mass index QTL 2 (mouse)6450382345291115Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487403016Mouse
12904934Edlmmq4_mextensor digitorum longus muscle mass QTL 4 (mouse)6125514064Mouse
5491191Mobq2_mmultigenic obesity QTL 2 (mouse)Not determined6132144495Mouse
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396633110Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396633110Mouse
1300731Smdq3_msegregation of mitochondrial DNA QTL 3 (mouse)Not determined6424920638249325Mouse
1301178Lith10_mlithogenic gene 10 (mouse)Not determined6121465015Mouse
15039372Nmrs22_mNAFLD-associated magnetic resonance shift 22 (mouse)6147633435476334Mouse
12904942Tammq3_mtibialis anterior muscle mass QTL 3 (mouse)6125514064Mouse
1357503Nhdlq5_mnon-HDL QTL 5 (mouse)Not determined6121465015Mouse
10043884Bhr8_mbronchial hyperresponsiveness 8 (mouse)Not determined6121465015Mouse
10044000Mobq9_mmultigenetic obesity QTL 9 (mouse)Not determined6121465015Mouse
1357481Aaj2_manxiety in A/J 2 (mouse)Not determined6450382348703611Mouse
12904955Gmmq3_mgastrocnemius muscle mass QTL 3 (mouse)6125514064Mouse

Markers in Region
AF031919  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3864,674,475 - 4,674,556UniSTSGRCm38
MGSCv3764,624,475 - 4,624,556UniSTSGRCm37
Celera64,817,577 - 4,817,658UniSTS
Cytogenetic Map6A1UniSTS
cM Map61.0UniSTS
Whitehead/MRC_RH632.08UniSTS
Sgce  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv3764,643,916 - 4,644,183UniSTSGRCm37
Celera64,837,020 - 4,837,287UniSTS
Cytogenetic Map6A1UniSTS
cM Map61.0UniSTS
cM Map61.0UniSTS
Sgce  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3864,693,916 - 4,694,183UniSTSGRCm38
MGSCv3764,643,916 - 4,644,183UniSTSGRCm37
Celera64,837,020 - 4,837,287UniSTS
Cytogenetic Map6A1UniSTS
cM Map61.0UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001130188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001130189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001130190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001130191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_177058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_177059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB117975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB200281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB200282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC084315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC091395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF031919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF103877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK076102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW457608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC012665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY336674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000004750   ⟹   ENSMUSP00000004750
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl64,674,354 - 4,747,207 (-)Ensembl
GRCm38.p6 Ensembl64,674,354 - 4,747,207 (-)Ensembl
Ensembl Acc Id: ENSMUST00000090686   ⟹   ENSMUSP00000088185
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl64,674,384 - 4,747,116 (-)Ensembl
GRCm38.p6 Ensembl64,674,384 - 4,747,116 (-)Ensembl
Ensembl Acc Id: ENSMUST00000101677   ⟹   ENSMUSP00000099200
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl64,674,418 - 4,747,188 (-)Ensembl
GRCm38.p6 Ensembl64,674,418 - 4,747,188 (-)Ensembl
Ensembl Acc Id: ENSMUST00000115577   ⟹   ENSMUSP00000111240
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl64,674,350 - 4,747,176 (-)Ensembl
GRCm38.p6 Ensembl64,674,350 - 4,747,176 (-)Ensembl
Ensembl Acc Id: ENSMUST00000115579   ⟹   ENSMUSP00000111242
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl64,674,350 - 4,747,204 (-)Ensembl
GRCm38.p6 Ensembl64,674,350 - 4,747,204 (-)Ensembl
Ensembl Acc Id: ENSMUST00000123907   ⟹   ENSMUSP00000120910
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl64,691,600 - 4,747,063 (-)Ensembl
GRCm38.p6 Ensembl64,691,600 - 4,747,063 (-)Ensembl
Ensembl Acc Id: ENSMUST00000126151   ⟹   ENSMUSP00000120718
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl64,674,354 - 4,747,157 (-)Ensembl
GRCm38.p6 Ensembl64,674,354 - 4,747,157 (-)Ensembl
Ensembl Acc Id: ENSMUST00000128109
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl64,688,612 - 4,747,080 (-)Ensembl
GRCm38.p6 Ensembl64,688,612 - 4,747,080 (-)Ensembl
Ensembl Acc Id: ENSMUST00000133306   ⟹   ENSMUSP00000121964
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl64,674,418 - 4,747,124 (-)Ensembl
GRCm38.p6 Ensembl64,674,418 - 4,747,124 (-)Ensembl
Ensembl Acc Id: ENSMUST00000139029
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl64,691,428 - 4,747,070 (-)Ensembl
GRCm38.p6 Ensembl64,691,428 - 4,747,070 (-)Ensembl
Ensembl Acc Id: ENSMUST00000153284
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl64,677,710 - 4,747,157 (-)Ensembl
GRCm38.p6 Ensembl64,677,710 - 4,747,157 (-)Ensembl
Ensembl Acc Id: ENSMUST00000203556
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl64,707,613 - 4,712,028 (-)Ensembl
GRCm38.p6 Ensembl64,707,613 - 4,712,028 (-)Ensembl
Ensembl Acc Id: ENSMUST00000204897
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl64,737,142 - 4,740,207 (-)Ensembl
GRCm38.p6 Ensembl64,737,142 - 4,740,207 (-)Ensembl
RefSeq Acc Id: NM_001130188   ⟹   NP_001123660
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,674,350 - 4,747,116 (-)NCBI
GRCm3864,674,350 - 4,747,204 (-)ENTREZGENE
MGSCv3764,624,350 - 4,697,204 (-)RGD
Celera64,817,452 - 4,890,164 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001130189   ⟹   NP_001123661
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,674,350 - 4,747,116 (-)NCBI
GRCm3864,674,350 - 4,747,204 (-)ENTREZGENE
MGSCv3764,624,350 - 4,697,204 (-)RGD
Celera64,817,452 - 4,890,164 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001130190   ⟹   NP_001123662
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,674,350 - 4,747,116 (-)NCBI
GRCm3864,674,350 - 4,747,204 (-)ENTREZGENE
MGSCv3764,624,350 - 4,697,204 (-)RGD
Celera64,817,452 - 4,890,164 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001130191   ⟹   NP_001123663
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,674,350 - 4,747,116 (-)NCBI
GRCm3864,674,350 - 4,747,204 (-)ENTREZGENE
MGSCv3764,624,350 - 4,697,204 (-)RGD
Celera64,817,452 - 4,890,164 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001410332   ⟹   NP_001397261
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,674,350 - 4,747,116 (-)NCBI
RefSeq Acc Id: NM_001410333   ⟹   NP_001397262
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,674,350 - 4,747,116 (-)NCBI
RefSeq Acc Id: NM_001410334   ⟹   NP_001397263
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,674,350 - 4,747,116 (-)NCBI
RefSeq Acc Id: NM_001410335   ⟹   NP_001397264
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,674,350 - 4,747,116 (-)NCBI
RefSeq Acc Id: NM_001410336   ⟹   NP_001397265
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,674,350 - 4,747,116 (-)NCBI
RefSeq Acc Id: NM_001410337   ⟹   NP_001397266
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,674,350 - 4,747,116 (-)NCBI
RefSeq Acc Id: NM_001410338   ⟹   NP_001397267
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,674,350 - 4,747,116 (-)NCBI
RefSeq Acc Id: NM_001410339   ⟹   NP_001397268
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,674,350 - 4,747,116 (-)NCBI
RefSeq Acc Id: NM_011360   ⟹   NP_035490
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,674,350 - 4,747,116 (-)NCBI
GRCm3864,674,350 - 4,747,204 (-)ENTREZGENE
MGSCv3764,624,350 - 4,697,204 (-)RGD
Celera64,817,452 - 4,890,164 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_177058
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,674,350 - 4,747,116 (-)NCBI
RefSeq Acc Id: NR_177059
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,674,350 - 4,747,116 (-)NCBI
RefSeq Acc Id: XM_006505019   ⟹   XP_006505082
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,674,350 - 4,747,180 (-)NCBI
GRCm3864,674,350 - 4,747,182 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006505020   ⟹   XP_006505083
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,674,350 - 4,747,180 (-)NCBI
GRCm3864,674,350 - 4,747,183 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006505024   ⟹   XP_006505087
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,674,350 - 4,747,092 (-)NCBI
GRCm3864,674,350 - 4,747,092 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030255277   ⟹   XP_030111137
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,674,350 - 4,747,180 (-)NCBI
GRCm3864,674,350 - 4,747,182 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030255278   ⟹   XP_030111138
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,674,350 - 4,747,180 (-)NCBI
GRCm3864,674,350 - 4,747,184 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036165974   ⟹   XP_036021867
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,674,350 - 4,747,178 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036165975   ⟹   XP_036021868
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,674,350 - 4,747,179 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001123660 (Get FASTA)   NCBI Sequence Viewer  
  NP_001123661 (Get FASTA)   NCBI Sequence Viewer  
  NP_001123662 (Get FASTA)   NCBI Sequence Viewer  
  NP_001123663 (Get FASTA)   NCBI Sequence Viewer  
  NP_001397261 (Get FASTA)   NCBI Sequence Viewer  
  NP_001397262 (Get FASTA)   NCBI Sequence Viewer  
  NP_001397263 (Get FASTA)   NCBI Sequence Viewer  
  NP_001397264 (Get FASTA)   NCBI Sequence Viewer  
  NP_001397265 (Get FASTA)   NCBI Sequence Viewer  
  NP_001397266 (Get FASTA)   NCBI Sequence Viewer  
  NP_001397267 (Get FASTA)   NCBI Sequence Viewer  
  NP_001397268 (Get FASTA)   NCBI Sequence Viewer  
  NP_035490 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505082 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505083 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505087 (Get FASTA)   NCBI Sequence Viewer  
  XP_030111137 (Get FASTA)   NCBI Sequence Viewer  
  XP_030111138 (Get FASTA)   NCBI Sequence Viewer  
  XP_036021867 (Get FASTA)   NCBI Sequence Viewer  
  XP_036021868 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC14020 (Get FASTA)   NCBI Sequence Viewer  
  AAF21895 (Get FASTA)   NCBI Sequence Viewer  
  AAH12665 (Get FASTA)   NCBI Sequence Viewer  
  BAC36184 (Get FASTA)   NCBI Sequence Viewer  
  BAD21207 (Get FASTA)   NCBI Sequence Viewer  
  BAE16175 (Get FASTA)   NCBI Sequence Viewer  
  BAE16176 (Get FASTA)   NCBI Sequence Viewer  
  BAE21034 (Get FASTA)   NCBI Sequence Viewer  
  EDL13980 (Get FASTA)   NCBI Sequence Viewer  
  EDL13981 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000004750
  ENSMUSP00000004750.10
  ENSMUSP00000088185
  ENSMUSP00000088185.5
  ENSMUSP00000099200
  ENSMUSP00000099200.5
  ENSMUSP00000111240
  ENSMUSP00000111240.3
  ENSMUSP00000111242
  ENSMUSP00000111242.2
  ENSMUSP00000120718
  ENSMUSP00000120718.3
  ENSMUSP00000120910.4
  ENSMUSP00000121964
  ENSMUSP00000121964.3
GenBank Protein O70258 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_035490   ⟸   NM_011360
- Peptide Label: isoform 4
- UniProtKB: Q921G2 (UniProtKB/Swiss-Prot),   O70258 (UniProtKB/Swiss-Prot),   Q3V1W5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001123660   ⟸   NM_001130188
- Peptide Label: isoform 1
- UniProtKB: Q3V1W5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001123661   ⟸   NM_001130189
- Peptide Label: isoform 2
- UniProtKB: F8WGM3 (UniProtKB/TrEMBL),   Q6L8N9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001123662   ⟸   NM_001130190
- Peptide Label: isoform 3
- UniProtKB: F6R6P2 (UniProtKB/TrEMBL),   Q4H438 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001123663   ⟸   NM_001130191
- Peptide Label: isoform 5
- UniProtKB: E9PX46 (UniProtKB/TrEMBL),   Q4H437 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006505083   ⟸   XM_006505020
- Peptide Label: isoform X2
- UniProtKB: Q6L8N9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006505082   ⟸   XM_006505019
- Peptide Label: isoform X1
- UniProtKB: Q6L8N9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006505087   ⟸   XM_006505024
- Peptide Label: isoform X12
- UniProtKB: Q6L8N9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030111138   ⟸   XM_030255278
- Peptide Label: isoform X4
- UniProtKB: Q4H437 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030111137   ⟸   XM_030255277
- Peptide Label: isoform X3
- UniProtKB: Q4H438 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000088185   ⟸   ENSMUST00000090686
Ensembl Acc Id: ENSMUSP00000121964   ⟸   ENSMUST00000133306
Ensembl Acc Id: ENSMUSP00000120718   ⟸   ENSMUST00000126151
Ensembl Acc Id: ENSMUSP00000099200   ⟸   ENSMUST00000101677
Ensembl Acc Id: ENSMUSP00000111242   ⟸   ENSMUST00000115579
Ensembl Acc Id: ENSMUSP00000111240   ⟸   ENSMUST00000115577
Ensembl Acc Id: ENSMUSP00000120910   ⟸   ENSMUST00000123907
Ensembl Acc Id: ENSMUSP00000004750   ⟸   ENSMUST00000004750
RefSeq Acc Id: XP_036021868   ⟸   XM_036165975
- Peptide Label: isoform X9
- UniProtKB: Q6L8N9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036021867   ⟸   XM_036165974
- Peptide Label: isoform X8
- UniProtKB: Q6L8N9 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001397265   ⟸   NM_001410336
- Peptide Label: isoform 10
- UniProtKB: Q4H437 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001397264   ⟸   NM_001410335
- Peptide Label: isoform 9
- UniProtKB: F6WKE4 (UniProtKB/TrEMBL),   Q4H438 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001397263   ⟸   NM_001410334
- Peptide Label: isoform 8
- UniProtKB: D3Z572 (UniProtKB/TrEMBL),   Q4H437 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001397262   ⟸   NM_001410333
- Peptide Label: isoform 7
- UniProtKB: Q6L8N9 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001397261   ⟸   NM_001410332
- Peptide Label: isoform 6
- UniProtKB: Q4H437 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001397268   ⟸   NM_001410339
- Peptide Label: isoform 13
- UniProtKB: Q4H437 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001397266   ⟸   NM_001410337
- Peptide Label: isoform 11
- UniProtKB: Q6L8N9 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001397267   ⟸   NM_001410338
- Peptide Label: isoform 12
- UniProtKB: Q4H438 (UniProtKB/TrEMBL)
Protein Domains
Dystroglycan-type cadherin-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O70258-F1-model_v2 AlphaFold O70258 1-437 view protein structure

Promoters
RGD ID:6839743
Promoter ID:MM_KWN:45090
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   ES_Cell,   Lung,   MEF_B4
Transcripts:ENSMUST00000090686,   ENSMUST00000101677,   NM_001130188,   NM_001130189,   NM_001130190,   NM_001130191,   NM_011360,   NM_130877,   OTTMUST00000056135,   UC009AVU.1,   UC009AVV.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3664,696,891 - 4,697,922 (+)MPROMDB
RGD ID:6888936
Promoter ID:EPDNEW_M7919
Type:initiation region
Name:Sgce_1
Description:Mus musculus sarcoglycan, epsilon , transcript variant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3864,747,116 - 4,747,176EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1329042 AgrOrtholog
Ensembl Genes ENSMUSG00000004631 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000004750 ENTREZGENE
  ENSMUST00000004750.15 UniProtKB/TrEMBL
  ENSMUST00000090686 ENTREZGENE
  ENSMUST00000090686.11 UniProtKB/TrEMBL
  ENSMUST00000101677 ENTREZGENE
  ENSMUST00000101677.9 UniProtKB/TrEMBL
  ENSMUST00000115577 ENTREZGENE
  ENSMUST00000115577.9 UniProtKB/Swiss-Prot
  ENSMUST00000115579 ENTREZGENE
  ENSMUST00000115579.8 UniProtKB/Swiss-Prot
  ENSMUST00000123907.3 UniProtKB/TrEMBL
  ENSMUST00000126151 ENTREZGENE
  ENSMUST00000126151.8 UniProtKB/TrEMBL
  ENSMUST00000133306 ENTREZGENE
  ENSMUST00000133306.8 UniProtKB/TrEMBL
InterPro Cadg UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sarcoglycan_alpha/epsilon UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sarcoglycan_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sarcoglycan_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20392 UniProtKB/Swiss-Prot
MGD MGI:1329042 ENTREZGENE
NCBI Gene 20392 ENTREZGENE
PANTHER PTHR10132 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10132:SF17 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Sarcoglycan_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sarcoglycan_2_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Sgce PhenoGen
SMART CADG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D3Z572 ENTREZGENE, UniProtKB/TrEMBL
  E9PX46 ENTREZGENE, UniProtKB/TrEMBL
  F6R6P2 ENTREZGENE, UniProtKB/TrEMBL
  F6ULV5_MOUSE UniProtKB/TrEMBL
  F6WKE4 ENTREZGENE, UniProtKB/TrEMBL
  F8WGM3 ENTREZGENE, UniProtKB/TrEMBL
  O70258 ENTREZGENE
  Q3V1W5 ENTREZGENE, UniProtKB/TrEMBL
  Q4H437 ENTREZGENE, UniProtKB/TrEMBL
  Q4H438 ENTREZGENE, UniProtKB/TrEMBL
  Q6L8N9 ENTREZGENE, UniProtKB/TrEMBL
  Q921G2 ENTREZGENE
  SGCE_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q921G2 UniProtKB/Swiss-Prot