Syncq6_m QTL Report (Mus musculus) - Rat Genome Database

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QTL Registration

QTL: Syncq6_m (synovial calcification QTL 6 (mouse)) Mus musculus

Symbol: Syncq6_m
Name: synovial calcification QTL 6 (mouse)
RGD ID: 14700782
LOD Score: Not Available
P Value: Not Available
Variance: Not Available
Position
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3964,177,000 - 5,219,000MOUSEQTLGRCm39
GRCm3864,177,000 - 5,219,000MOUSEQTLGRCm38
cM Map6syntenicMOUSEQTL
Cross Type: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



References

References - curated
# Reference Title Reference Citation
1. Mouse Genome Database (MGD) Mouse Genome Database (MGD)
Additional References at PubMed
PMID:25989359  


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
401700470LOC131371268STARR-seq mESC enhancer starr_15009641903684192204Mouse
401716865LOC131371269STARR-seq mESC enhancer starr_15010642818604283044Mouse
6771317Gm8602predicted gene 8602643590244359892Mouse
39130375LOC11856743260S acidic ribosomal protein P1-like643896084391241Mouse
9614360Gm33788predicted gene, 33788644215374446272Mouse
401713703LOC131371270STARR-seq mESC enhancer starr_15011644270694428324Mouse
12795796Gm46948predicted gene, 46948644389654465277Mouse
15017834Gm52942predicted gene, 52942644678494468000Mouse
39129634LOC109279945VISTA enhancer mm398644834634485322Mouse
39130008Gm53308predicted gene, 53308644850184486569Mouse
401712469LOC131371271STARR-seq mESC enhancer starr_15013644960144497458Mouse
39130013Gm53307predicted gene, 53307644973654507872Mouse
730985Col1a2collagen, type I, alpha 2645056184541543Mouse
401705844LOC131371272STARR-seq mESC enhancer starr_15014645496364551510Mouse
39129372LOC109279946VISTA enhancer mm400645535374555066Mouse
5143272Gm18289predicted gene, 18289645708794571728Mouse
9657549Gm33959predicted gene, 33959645843454587092Mouse
1619011Casd1CAS1 domain containing 1646009114643355Mouse
10040672Gm38761predicted gene, 38761646545544661370Mouse
1553181Sgcesarcoglycan, epsilon646743504747180Mouse
401709566LOC131371273STARR-seq mESC enhancer starr_15017646764774678449Mouse
401708076LOC131371274STARR-seq mESC enhancer starr_15018646842314686235Mouse
401713940LOC131371275STARR-seq mESC enhancer starr_15019647324614736315Mouse
1621381Peg10paternally expressed 10647473064760517Mouse
39131169Gm51408predicted gene, 51408647952234805994Mouse
9625982Gm20714predicted gene 20714648070554816328Mouse
401715757LOC131371276STARR-seq mESC enhancer starr_15022648918744893777Mouse
2295263Gmfg-psglia maturation factor, gamma, pseudogene648932934893868Mouse
1552999Ppp1r9aprotein phosphatase 1, regulatory subunit 9A649027025165661Mouse
401834614LOC132411335STARR-positive B cell enhancer mm9_chr6:4873843-4874143649238434924143Mouse
401706860LOC131371277STARR-seq mESC enhancer starr_15028650169715022336Mouse
15020218Gm52886predicted gene, 52886650460625054688Mouse
401712445LOC131371278STARR-seq mESC enhancer starr_15032651185745120459Mouse
12793839Gm46949predicted gene, 46949651512375154012Mouse
733240Pon1paraoxonase 1651681015193824Mouse
1552156Pon3paraoxonase 3652162535256236Mouse
401704736LOC131371279STARR-seq mESC enhancer starr_15033652163345219709Mouse

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
14746985Manh59_mmandible shape 59 (mouse)6120847193Mouse
1301178Lith10_mlithogenic gene 10 (mouse)Not determined6121465015Mouse
10043884Bhr8_mbronchial hyperresponsiveness 8 (mouse)Not determined6121465015Mouse
10044000Mobq9_mmultigenetic obesity QTL 9 (mouse)Not determined6121465015Mouse
1357503Nhdlq5_mnon-HDL QTL 5 (mouse)Not determined6121465015Mouse
12904934Edlmmq4_mextensor digitorum longus muscle mass QTL 4 (mouse)6125514064Mouse
12904942Tammq3_mtibialis anterior muscle mass QTL 3 (mouse)6125514064Mouse
12904955Gmmq3_mgastrocnemius muscle mass QTL 3 (mouse)6125514064Mouse
1301131Chol2_mcholesterol 2 (mouse)Not determined6132144495Mouse
5491191Mobq2_mmultigenic obesity QTL 2 (mouse)Not determined6132144495Mouse
1302024Skull7_mskull morphology 7 (mouse)Not determined6132144495Mouse
15039372Nmrs22_mNAFLD-associated magnetic resonance shift 22 (mouse)6147633435476334Mouse
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
14700782Syncq6_msynovial calcification QTL 6 (mouse)641770005219000Mouse
1300731Smdq3_msegregation of mitochondrial DNA QTL 3 (mouse)Not determined6424920638249325Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487403016Mouse
11353836Bmiq1_mbody mass index QTL 1 (mouse)6450382329751333Mouse
11353840Bmiq2_mbody mass index QTL 2 (mouse)6450382345291115Mouse
1357520Axtq2_manxiety QTL 2 (mouse)Not determined6450382348703611Mouse
1357481Aaj2_manxiety in A/J 2 (mouse)Not determined6450382348703611Mouse
11353841Bmiq3_mbody mass index QTL 3 (mouse)6450382348703611Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396633110Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396633110Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396633110Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396633110Mouse


Additional Information

Database Acc Id Source(s)
MGD MGI:6342095 MouseQtl