Elac2 (elaC ribonuclease Z 2) - Rat Genome Database

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Gene: Elac2 (elaC ribonuclease Z 2) Mus musculus
Analyze
Symbol: Elac2
Name: elaC ribonuclease Z 2
RGD ID: 1552652
MGI Page MGI
Description: Predicted to enable 3'-tRNA processing endoribonuclease activity and tRNA-specific ribonuclease activity. Predicted to be involved in mitochondrial tRNA 3'-end processing. Located in mitochondrial nucleoid. Is expressed in extraembryonic component and placenta. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 17. Orthologous to human ELAC2 (elaC ribonuclease Z 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110017O07Rik; D11Wsu80; D11Wsu80e; elaC homolog 2; elaC homolog protein 2; Hpc2; ribonuclease Z 2; RNase Z 2; tRNA 3 endonuclease 2; tRNase Z 2; tRNase Z(L); zinc phosphodiesterase ELAC protein 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391164,869,856 - 64,892,906 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1164,869,864 - 64,892,895 (+)EnsemblGRCm39 Ensembl
GRCm381164,979,030 - 65,002,080 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1164,979,038 - 65,002,069 (+)EnsemblGRCm38mm10GRCm38
MGSCv371164,792,537 - 64,815,578 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361164,795,292 - 64,818,264 (+)NCBIMGSCv36mm8
Celera1171,914,934 - 71,938,052 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1140.42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
mitochondrial nucleoid  (IDA,ISO)
mitochondrion  (HDA,IBA,ISO)
nucleoplasm  (ISO)
nucleus  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome. Ko MS, etal., Hum Mol Genet 1998 Nov;7(12):1967-78.
3. 3' processing of eukaryotic precursor tRNAs. Maraia RJ and Lamichhane TN, Wiley Interdiscip Rev RNA. 2011 May-Jun;2(3):362-75. doi: 10.1002/wrna.64.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11175785   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:15489334  
PMID:15782199   PMID:16141072   PMID:16141073   PMID:18614015   PMID:18809514   PMID:21677750   PMID:21873635   PMID:24703694   PMID:30126926   PMID:30973865   PMID:32325033   PMID:34474245  
PMID:36831280   PMID:37093546   PMID:37889747  


Genomics

Comparative Map Data
Elac2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391164,869,856 - 64,892,906 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1164,869,864 - 64,892,895 (+)EnsemblGRCm39 Ensembl
GRCm381164,979,030 - 65,002,080 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1164,979,038 - 65,002,069 (+)EnsemblGRCm38mm10GRCm38
MGSCv371164,792,537 - 64,815,578 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361164,795,292 - 64,818,264 (+)NCBIMGSCv36mm8
Celera1171,914,934 - 71,938,052 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1140.42NCBI
ELAC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381712,991,612 - 13,018,027 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1712,991,612 - 13,018,065 (-)EnsemblGRCh38hg38GRCh38
GRCh371712,894,929 - 12,921,344 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361712,836,427 - 12,862,084 (-)NCBINCBI36Build 36hg18NCBI36
Build 341712,836,434 - 12,862,049NCBI
Celera1712,920,244 - 12,946,689 (-)NCBICelera
Cytogenetic Map17p12NCBI
HuRef1712,790,637 - 12,816,700 (-)NCBIHuRef
CHM1_11712,903,688 - 12,930,141 (-)NCBICHM1_1
T2T-CHM13v2.01712,899,079 - 12,925,488 (-)NCBIT2T-CHM13v2.0
Elac2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81050,131,449 - 50,154,755 (+)NCBIGRCr8
mRatBN7.21049,632,308 - 49,655,614 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1049,632,378 - 49,655,614 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1054,301,055 - 54,324,291 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01053,791,048 - 53,814,284 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01049,305,762 - 49,328,995 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01051,478,378 - 51,501,167 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1051,478,378 - 51,501,165 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01051,236,364 - 51,259,153 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41051,290,317 - 51,313,106 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11051,303,939 - 51,326,727 (+)NCBI
Celera1048,848,362 - 48,871,152 (+)NCBICelera
Cytogenetic Map10q24NCBI
Elac2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554674,406,824 - 4,427,780 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554674,406,947 - 4,428,769 (+)NCBIChiLan1.0ChiLan1.0
ELAC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21960,728,652 - 60,756,737 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11765,535,242 - 65,564,092 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01738,631,454 - 38,657,855 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11743,331,453 - 43,357,469 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1743,331,453 - 43,357,241 (+)Ensemblpanpan1.1panPan2
ELAC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1536,957,901 - 36,978,646 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl536,958,264 - 36,978,606 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha537,101,388 - 37,122,087 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0537,066,393 - 37,087,109 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl537,066,082 - 37,087,245 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1537,039,350 - 37,060,058 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0536,986,550 - 37,007,239 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0537,176,497 - 37,197,209 (-)NCBIUU_Cfam_GSD_1.0
Elac2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560252,069,288 - 52,090,855 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365955,543,221 - 5,565,200 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365955,543,476 - 5,565,075 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ELAC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1257,206,600 - 57,238,444 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11257,206,596 - 57,238,438 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21260,096,837 - 60,116,251 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ELAC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11612,328,864 - 12,353,916 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1612,329,300 - 12,353,872 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660598,884,933 - 8,910,095 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Elac2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624877850,726 - 874,831 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624877852,422 - 874,736 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Elac2
807 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1179
Count of miRNA genes:529
Interacting mature miRNAs:631
Transcripts:ENSMUST00000071891, ENSMUST00000101049, ENSMUST00000108697, ENSMUST00000128693, ENSMUST00000132308, ENSMUST00000140369, ENSMUST00000142574
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
1302186Blmpf2_mbleomycin-induced pulmonary fibrosis 2 (mouse)Not determined115406567067078411Mouse
4142148Ckdbp2_mchronic kidney disease blood pressure locus 2 (mouse)Not determined115408094165103841Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5528498572209927Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115849055574754758Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
11532697Sluc36_msusceptibility to lung cancer 36 (mouse)115925661769482699Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
4141642Ltxs2_mlethal factor toxin susceptibility 2 (mouse)Not determined116304211368500330Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116331940781830473Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116331940794063918Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse

Markers in Region
AU040829  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381165,002,124 - 65,002,233UniSTSGRCm38
MGSCv371164,815,626 - 64,815,735UniSTSGRCm37
Celera1171,938,100 - 71,938,209UniSTS
Cytogenetic Map11B3UniSTS
cM Map1131.0UniSTS
Whitehead/MRC_RH11851.05UniSTS
Whitehead/MRC_RH11852.61UniSTS
RH124888  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381165,001,737 - 65,001,853UniSTSGRCm38
MGSCv371164,815,239 - 64,815,355UniSTSGRCm37
Celera1171,937,713 - 71,937,829UniSTS
Cytogenetic Map11B3UniSTS
cM Map1131.0UniSTS
UniSTS:236614  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381165,002,164 - 65,002,392UniSTSGRCm38
MGSCv371164,815,666 - 64,815,894UniSTSGRCm37
Celera1171,938,140 - 71,938,368UniSTS
Cytogenetic Map11B3UniSTS
cM Map1131.0UniSTS
RH125885  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381165,001,801 - 65,002,052UniSTSGRCm38
MGSCv371164,815,303 - 64,815,554UniSTSGRCm37
Celera1171,937,777 - 71,938,028UniSTS
Cytogenetic Map11B3UniSTS
cM Map1131.0UniSTS
Whitehead/MRC_RH11848.76UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001362982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_023479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEKQ02081307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF308696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF348157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL663045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC048235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000071891   ⟹   ENSMUSP00000071788
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1164,869,864 - 64,892,895 (+)Ensembl
GRCm38.p6 Ensembl1164,979,038 - 65,002,069 (+)Ensembl
RefSeq Acc Id: ENSMUST00000101049   ⟹   ENSMUSP00000098610
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1164,869,900 - 64,892,426 (+)Ensembl
GRCm38.p6 Ensembl1164,979,074 - 65,001,600 (+)Ensembl
RefSeq Acc Id: ENSMUST00000108697   ⟹   ENSMUSP00000104337
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1164,869,897 - 64,892,154 (+)Ensembl
GRCm38.p6 Ensembl1164,979,071 - 65,001,328 (+)Ensembl
RefSeq Acc Id: ENSMUST00000128693
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1164,891,162 - 64,892,714 (+)Ensembl
GRCm38.p6 Ensembl1165,000,336 - 65,001,888 (+)Ensembl
RefSeq Acc Id: ENSMUST00000132308   ⟹   ENSMUSP00000117422
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1164,876,299 - 64,883,332 (+)Ensembl
GRCm38.p6 Ensembl1164,985,473 - 64,992,506 (+)Ensembl
RefSeq Acc Id: ENSMUST00000140369
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1164,869,917 - 64,892,893 (+)Ensembl
GRCm38.p6 Ensembl1164,979,091 - 65,002,067 (+)Ensembl
RefSeq Acc Id: ENSMUST00000142574
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1164,869,898 - 64,871,485 (+)Ensembl
GRCm38.p6 Ensembl1164,979,072 - 64,980,659 (+)Ensembl
RefSeq Acc Id: NM_001362982   ⟹   NP_001349911
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391164,869,861 - 64,892,900 (+)NCBI
GRCm381164,979,035 - 65,002,074 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001362983   ⟹   NP_001349912
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391164,869,861 - 64,892,900 (+)NCBI
GRCm381164,979,035 - 65,002,074 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001362984   ⟹   NP_001349913
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391164,869,861 - 64,892,900 (+)NCBI
GRCm381164,979,035 - 65,002,074 (+)NCBI
Sequence:
RefSeq Acc Id: NM_023479   ⟹   NP_075968
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391164,869,861 - 64,892,900 (+)NCBI
GRCm381164,979,035 - 65,002,074 (+)NCBI
MGSCv371164,792,537 - 64,815,578 (+)RGD
Celera1171,914,934 - 71,938,052 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006534065   ⟹   XP_006534128
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391164,869,856 - 64,892,906 (+)NCBI
GRCm381164,979,030 - 65,002,080 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006534066   ⟹   XP_006534129
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391164,869,873 - 64,892,906 (+)NCBI
GRCm381164,979,058 - 65,002,080 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006534067   ⟹   XP_006534130
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391164,869,858 - 64,892,906 (+)NCBI
GRCm381164,979,031 - 65,002,080 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006534068   ⟹   XP_006534131
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391164,869,858 - 64,892,906 (+)NCBI
GRCm381164,979,032 - 65,002,080 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246264   ⟹   XP_030102124
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391164,869,874 - 64,892,896 (+)NCBI
GRCm381164,979,058 - 65,002,070 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156931   ⟹   XP_036012824
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391164,869,874 - 64,892,906 (+)NCBI
Sequence:
RefSeq Acc Id: NP_075968   ⟸   NM_023479
- Peptide Label: isoform 1
- UniProtKB: Q9D1A8 (UniProtKB/Swiss-Prot),   Q9CTA2 (UniProtKB/Swiss-Prot),   Q99MF1 (UniProtKB/Swiss-Prot),   Q99MF0 (UniProtKB/Swiss-Prot),   B1ATP6 (UniProtKB/Swiss-Prot),   Q9EPZ2 (UniProtKB/Swiss-Prot),   Q80Y81 (UniProtKB/Swiss-Prot),   Q3U0M8 (UniProtKB/TrEMBL),   B1ATP7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006534128   ⟸   XM_006534065
- Peptide Label: isoform X1
- UniProtKB: B1ATP7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006534129   ⟸   XM_006534066
- Peptide Label: isoform X2
- UniProtKB: B1ATP7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006534130   ⟸   XM_006534067
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006534131   ⟸   XM_006534068
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: NP_001349911   ⟸   NM_001362982
- Peptide Label: isoform 2
- UniProtKB: B1ATP7 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001349912   ⟸   NM_001362983
- Peptide Label: isoform 3
- UniProtKB: B1ATP7 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001349913   ⟸   NM_001362984
- Peptide Label: isoform 4
RefSeq Acc Id: XP_030102124   ⟸   XM_030246264
- Peptide Label: isoform X3
- UniProtKB: B1ATP7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000071788   ⟸   ENSMUST00000071891
RefSeq Acc Id: ENSMUSP00000117422   ⟸   ENSMUST00000132308
RefSeq Acc Id: ENSMUSP00000098610   ⟸   ENSMUST00000101049
RefSeq Acc Id: ENSMUSP00000104337   ⟸   ENSMUST00000108697
RefSeq Acc Id: XP_036012824   ⟸   XM_036156931
- Peptide Label: isoform X4
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q80Y81-F1-model_v2 AlphaFold Q80Y81 1-831 view protein structure

Promoters
RGD ID:6820775
Promoter ID:MM_KWN:7882
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000101049,   ENSMUST00000108697,   NM_023479,   OTTMUST00000013129,   OTTMUST00000013134
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361164,792,176 - 64,792,676 (+)MPROMDB
RGD ID:6820781
Promoter ID:MM_KWN:7884
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Lung
Transcripts:OTTMUST00000013133
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361164,812,874 - 64,813,374 (+)MPROMDB
RGD ID:8675032
Promoter ID:EPDNEW_M15547
Type:initiation region
Name:Elac2_1
Description:Mus musculus elaC ribonuclease Z 2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15548  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381164,979,079 - 64,979,139EPDNEW
RGD ID:8675034
Promoter ID:EPDNEW_M15548
Type:single initiation site
Name:Elac2_2
Description:Mus musculus elaC ribonuclease Z 2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15547  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381164,986,316 - 64,986,376EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1890496 AgrOrtholog
Ensembl Genes ENSMUSG00000020549 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000071891 ENTREZGENE
  ENSMUST00000071891.12 UniProtKB/Swiss-Prot
  ENSMUST00000101049 ENTREZGENE
  ENSMUST00000101049.9 UniProtKB/Swiss-Prot
  ENSMUST00000108697.8 UniProtKB/TrEMBL
  ENSMUST00000132308.2 UniProtKB/TrEMBL
  ENSMUST00000140369 ENTREZGENE
Gene3D-CATH 3.60.15.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Metallo-B-lactamas UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RibonucZ/Hydroxyglut_hydro UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNZ2-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  tRNase_Z_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:68626 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1890496 ENTREZGENE
NCBI Gene 68626 ENTREZGENE
PANTHER ZINC PHOSPHODIESTERASE ELAC PROTEIN 2 UniProtKB/Swiss-Prot
  ZINC PHOSPHODIESTERASE ELAC PROTEIN 2 UniProtKB/Swiss-Prot
  ZINC PHOSPHODIESTERASE ELAC PROTEIN 2 UniProtKB/TrEMBL
  ZINC PHOSPHODIESTERASE ELAC PROTEIN 2 UniProtKB/TrEMBL
Pfam Lactamase_B_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lactamase_B_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Elac2 PhenoGen
Superfamily-SCOP SSF56281 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B1ATP6 ENTREZGENE
  B1ATP7 ENTREZGENE, UniProtKB/TrEMBL
  B1ATP9_MOUSE UniProtKB/TrEMBL
  Q3U0M8 ENTREZGENE, UniProtKB/TrEMBL
  Q80Y81 ENTREZGENE
  Q99MF0 ENTREZGENE
  Q99MF1 ENTREZGENE
  Q9CTA2 ENTREZGENE
  Q9D1A8 ENTREZGENE
  Q9EPZ2 ENTREZGENE
  RNZ2_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary B1ATP6 UniProtKB/Swiss-Prot
  Q99MF0 UniProtKB/Swiss-Prot
  Q99MF1 UniProtKB/Swiss-Prot
  Q9CTA2 UniProtKB/Swiss-Prot
  Q9D1A8 UniProtKB/Swiss-Prot
  Q9EPZ2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-29 Elac2  elaC ribonuclease Z 2    elaC homolog 2 (E. coli)  Symbol and/or name change 5135510 APPROVED