Ltxs2_m QTL Report (Mus musculus) - Rat Genome Database

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QTL: Ltxs2_m (lethal factor toxin susceptibility 2 (mouse)) Mus musculus

Symbol: Ltxs2_m
Name: lethal factor toxin susceptibility 2 (mouse)
RGD ID: 4141642
Trait: Not determined
LOD Score: Not Available
P Value: Not Available
Variance: Not Available
Position
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm391163,042,113 - 68,500,330MOUSEQTLGRCm39
GRCm381163,151,287 - 68,609,504MOUSEQTLGRCm38
MGSCv371162,964,789 - 68,423,006 (+)MOUSEQTLGRCm37
cM Map1139.0MOUSEQTL
Cross Type: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Mouse Genome Database (MGD) Mouse Genome Database (MGD)
2. Mouse MP Annotation Import Pipeline RGD automated import pipeline
Additional References at PubMed
PMID:14578173  


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1322974Dnah9dynein, axonemal, heavy chain 9116572215066059379Mouse
1312983Zkscan6zinc finger with KRAB and SCAN domains 6116569798065720065Mouse
735502Ntn1netrin 1116810019068277652Mouse
10950Myh3myosin, heavy polypeptide 3, skeletal muscle, embryonic116696910166993117Mouse
62210Stx8syntaxin 8116785723768097974Mouse
1317149Mfsd6lmajor facilitator superfamily domain containing 6-like116844701268449071Mouse
1316001Map2k4mitogen-activated protein kinase kinase 4116557907065679185Mouse
1319987Tmem220transmembrane protein 220116691595966927818Mouse
1552259Gas7growth arrest specific 7116734408367579818Mouse
16096219630013K17RikRIKEN cDNA 9630013K17 gene116385505263858866Mouse
16131882810001G20RikRIKEN cDNA 2810001G20 gene116397031063974085Mouse
1608673Ccdc42oscoiled-coil domain containing 42, opposite strand116847409068477783Mouse
1612528C78197expressed sequence C78197116808301868086905Mouse
1615189Hs3st3a1heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1116432615864413667Mouse
1614798Shisa6shisa family member 6116610255166418715Mouse
1552652Elac2elaC ribonuclease Z 2116486985664892906Mouse
16135142310065F04RikRIKEN cDNA 2310065F04 gene116700328767010906Mouse
1315918Dhrs7cdehydrogenase/reductase 7C116768909767706828Mouse
1616856Hmgb1-ps3high mobility group box 1, pseudogene 3116373691663737773Mouse
1614957Myocdmyocardin116506443465160821Mouse
1317759Usp43ubiquitin specific peptidase 43116774534967812979Mouse
1332239Arhgap44Rho GTPase activating protein 44116489286565053779Mouse
1617578Sco1SCO1 cytochrome c oxidase assembly protein116694347366958270Mouse
1616841Myh8myosin, heavy polypeptide 8, skeletal muscle, perinatal116716795067199460Mouse
1616842Myh4myosin, heavy polypeptide 4, skeletal muscle116712863867151273Mouse
1616843Myh2myosin, heavy polypeptide 2, skeletal muscle, adult116706185367088343Mouse
1550486Myh1myosin, heavy polypeptide 1, skeletal muscle, adult116709092267115401Mouse
1619036Pirtphosphoinositide-interacting regulator of transient receptor potential channels116680273166820703Mouse
11125Pmp22peripheral myelin protein 22116301980863050373Mouse
1618254Pik3r6phosphoinositide-3-kinase regulatory subunit 5116839384568443524Mouse
1623946Tmem238ltransmembrane protein 238 like116684736866855842Mouse
16231471700086D15RikRIKEN cDNA 1700086D15 gene116503893365050726Mouse
734066Rcvrnrecoverin116758615267594181Mouse
1621503Cfap52cilia and flagella associated protein 52116781563267856494Mouse
1620477Pik3r5phosphoinositide-3-kinase regulatory subunit 5116832295168388675Mouse
1624511Gm12298predicted gene 12298116679645866837912Mouse
1625903Gm12296predicted gene 12296116605886166192063Mouse
1550701Hs3st3b1heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1116377551963813110Mouse
735703Glp2rglucagon-like peptide 2 receptor116755487767661979Mouse
1321107Cox10heme A:farnesyltransferase cytochrome c oxidase assembly factor 10116385345363970298Mouse
1623720Ccdc42coiled-coil domain containing 42116847786368488777Mouse
2294967Gm12286predicted gene 12286116320292463203937Mouse
2295000Gm12297predicted gene 12297116645441566455593Mouse
2293965Gsg1l2GSG1-like 2116766543467680724Mouse
2294770Gm12285predicted gene 12285116313207463132271Mouse
1625986Mir744microRNA 744116562555965625658Mouse
1332389AdprmADP-ribose/CDP-alcohol diphosphatase, manganese dependent116692870666943481Mouse
737051Myh13myosin, heavy polypeptide 13, skeletal muscle116721792967262413Mouse
2313369F930015N05RikRIKEN cDNA F930015N05 gene116432396164327500Mouse
2312213Gm12293predicted gene 12293116506067065061190Mouse
2312235Gm12288predicted gene 12288116370784463709126Mouse
3962427Gm12304predicted gene 12304116798637567986827Mouse
5145427Gm12295predicted gene 12295116516848065178659Mouse
7488816n-TPtgg2nuclear encoded tRNA proline 2 (anticodon TGG)116718196567182036Mouse
9636857Gm29958predicted gene, 29958116351001463535250Mouse
9620835Gm29712predicted gene, 29712116679837866799189Mouse
9623880Gm30305predicted gene, 30305116455361964610084Mouse
9606279Gm31954predicted gene, 31954116829023368299660Mouse
9610397Gm30786predicted gene, 30786116553323865551187Mouse
9619477Gm30060predicted gene, 30060116384741863853167Mouse
9616641Gm31285predicted gene, 31285116702325267034775Mouse
9594329Myhasmyosin heavy chain gene antisense RNA116711502267128107Mouse
9675646Gm32046predicted gene, 32046116832151468322911Mouse
9679879Gm12290predicted gene 12290116405526764073000Mouse
9665997Gm12289predicted gene 12289116390344163906050Mouse
9648704Gm29851predicted gene, 29851116313812363140906Mouse
9648834Gm30586predicted gene, 30586116516075165179430Mouse
9657290Gm31459predicted gene, 31459116732656667326748Mouse
9645696Mir6406microRNA 6406116811171868111837Mouse
9644122Mir6923microRNA 6923116699063066990701Mouse
9999710Gm12299predicted gene 12299116689291266903024Mouse
10010091Gm40026predicted gene, 40026116554135465573318Mouse
10018039Gm40016predicted gene, 40016116334004163354889Mouse
10012600Gm40029predicted gene, 40029116723959767241069Mouse
10007338Gm40036predicted gene, 40036116845303668463714Mouse
10031705Gm40019predicted gene, 40019116350365563506618Mouse
10037175Gm40025predicted gene, 40025116473360064734743Mouse
10025671Gm40032predicted gene, 40032116770870867735345Mouse
10032855Gm40028predicted gene, 40028116642829466447188Mouse
10033277Gm40027predicted gene, 40027116603686966050903Mouse
11082127Gm12292predicted gene 12292116473016964789909Mouse
12797454Gm45945predicted gene, 45945116616451866169982Mouse
15023453Gm51866predicted gene, 51866116392384763928072Mouse
14997157Gm26128predicted gene, 26128116551722065517329Mouse
39129010LOC109279894VISTA enhancer mm67116509968165101283Mouse
39129871Gm53683predicted gene, 53683116703493967044470Mouse
39130710Gm53682predicted gene, 53682116567185965678957Mouse
39128801LOC109279902VISTA enhancer mm85116553973265542469Mouse
39129244Gm53667predicted gene, 53667116544588165447969Mouse
39128853Gm53042predicted gene, 53042116505070465061086Mouse
39129740Gm12301predicted gene 12301116746217267468577Mouse
39128481Gm57583predicted gene, 57583116678326666783404Mouse
39129776Gm12287predicted gene 12287116349056163495876Mouse
39130621Gm53712predicted gene, 53712116411379764130768Mouse
39129847Gm53711predicted gene, 53711116409418764110127Mouse
163691758LOC128926649CapStarr-seq enhancer MGSCv37_chr11:68084370-68084566116816169468161890Mouse
163674258LOC128926651CapStarr-seq enhancer MGSCv37_chr11:68245166-68245319116832249068322643Mouse
163681067LOC128926646CapStarr-seq enhancer MGSCv37_chr11:67939507-67939823116801683168017147Mouse
163705328LOC128926650CapStarr-seq enhancer MGSCv37_chr11:68084658-68084931116816198268162255Mouse
163690423LOC128926652CapStarr-seq enhancer MGSCv37_chr11:68276328-68276529116835365268353853Mouse
163661574LOC128926648CapStarr-seq enhancer MGSCv37_chr11:68084195-68084304116816151968161628Mouse
163670419LOC128926647CapStarr-seq enhancer MGSCv37_chr11:68012718-68012928116809004268090252Mouse
401700965LOC131378975STARR-seq mESC enhancer starr_29763116499673765001926Mouse
401702249LOC131378980STARR-seq mESC enhancer starr_29772116566023265661105Mouse
401701044LOC131378956STARR-seq mESC enhancer starr_29732116335722263359065Mouse
401703271LOC131378949STARR-seq mESC enhancer starr_29725116309166863093788Mouse
401702499LOC131378997STARR-seq mESC enhancer starr_29797116718092167181788Mouse
401700891LOC131378989STARR-seq mESC enhancer starr_29784116681025466811903Mouse
401701791LOC131378953STARR-seq mESC enhancer starr_29729116330255463304344Mouse
401702552LOC131378962STARR-seq mESC enhancer starr_29739116375158463754607Mouse
401713942LOC131378965STARR-seq mESC enhancer starr_29746116384290563844664Mouse
401715260LOC131378963STARR-seq mESC enhancer starr_29740116378771163790330Mouse
401714714LOC131378977STARR-seq mESC enhancer starr_29767116526943065270470Mouse
401714718LOC131379002STARR-seq mESC enhancer starr_29808116800818068009954Mouse
401713584LOC131378999STARR-seq mESC enhancer starr_29800116726996667273649Mouse
401713216LOC131379001STARR-seq mESC enhancer starr_29802116763114767632284Mouse
401715488LOC131378966STARR-seq mESC enhancer starr_29751116397988363981564Mouse
401713990LOC131378951STARR-seq mESC enhancer starr_29727116316138463163508Mouse
401715299LOC131378970STARR-seq mESC enhancer starr_29756116418962664190890Mouse
401714947LOC131379000STARR-seq mESC enhancer starr_29801116735900867360448Mouse
401714022LOC131378986STARR-seq mESC enhancer starr_29780116657228066574517Mouse
401715523LOC131378990STARR-seq mESC enhancer starr_29786116682287766824943Mouse
401714601LOC131378976STARR-seq mESC enhancer starr_29766116506925265070558Mouse
401713083LOC131378982STARR-seq mESC enhancer starr_29774116599887965999943Mouse
401714975LOC131378981STARR-seq mESC enhancer starr_29773116580502065806611Mouse
401713688LOC131378960STARR-seq mESC enhancer starr_29737116364378063646105Mouse
401710859LOC131378988STARR-seq mESC enhancer starr_29782116670671166708046Mouse
401710154LOC131379005STARR-seq mESC enhancer starr_29817116843298368433843Mouse
401710005LOC131378968STARR-seq mESC enhancer starr_29754116401557764017843Mouse
401710983LOC131378992STARR-seq mESC enhancer starr_29789116690744566910413Mouse
401711183LOC131378958STARR-seq mESC enhancer starr_29735116357807363579868Mouse
401712552LOC131378973STARR-seq mESC enhancer starr_29760116476810964769686Mouse
401709863LOC131378985STARR-seq mESC enhancer starr_29779116647794866479294Mouse
401712172LOC131378961STARR-seq mESC enhancer starr_29738116370479863706697Mouse
401710261LOC131378959STARR-seq mESC enhancer starr_29736116361339363614986Mouse
401707272LOC131379004STARR-seq mESC enhancer starr_29816116829119468292574Mouse
401707313LOC131378957STARR-seq mESC enhancer starr_29734116353667863538709Mouse
401709629LOC131378950STARR-seq mESC enhancer starr_29726116310430863106227Mouse
401707322LOC131378987STARR-seq mESC enhancer starr_29781116658651266589676Mouse
401707521LOC131378996STARR-seq mESC enhancer starr_29796116704607167047732Mouse
401707553LOC131378971STARR-seq mESC enhancer starr_29758116429096064292351Mouse
401706461LOC131378983STARR-seq mESC enhancer starr_29776116635097066352539Mouse
401704926LOC131378995STARR-seq mESC enhancer starr_29795116704430767045396Mouse
401705111LOC131378972STARR-seq mESC enhancer starr_29759116450948464510349Mouse
401705516LOC131378984STARR-seq mESC enhancer starr_29777116643049966432242Mouse
401703674LOC131378993STARR-seq mESC enhancer starr_29791116691227466916511Mouse
401704830LOC131378964STARR-seq mESC enhancer starr_29745116382686063828028Mouse
401706372LOC131378991STARR-seq mESC enhancer starr_29788116690123666903542Mouse
401705031LOC131378967STARR-seq mESC enhancer starr_29752116400690164008567Mouse
401704490LOC131378994STARR-seq mESC enhancer starr_29794116694861766951014Mouse
401705269LOC131378978STARR-seq mESC enhancer starr_29768116528578065287528Mouse
401715829LOC131378955STARR-seq mESC enhancer starr_29731116334440163347993Mouse
401716429LOC131378998STARR-seq mESC enhancer starr_29799116723544867238962Mouse
401716434LOC131378954STARR-seq mESC enhancer starr_29730116334016163341495Mouse
401717193LOC131379003STARR-seq mESC enhancer starr_29815116828435668286297Mouse
401717401LOC131378952STARR-seq mESC enhancer starr_29728116323929263241979Mouse
401715882LOC131378969STARR-seq mESC enhancer starr_29755116412620464127925Mouse
401716084LOC131378979STARR-seq mESC enhancer starr_29770116538491565386580Mouse
401715944LOC131378974STARR-seq mESC enhancer starr_29762116499027064991657Mouse
401717308LOC131378948STARR-seq mESC enhancer starr_29724116305949963060768Mouse
401836998LOC132441845STARR-positive B cell enhancer ABC_E1420116381306663813367Mouse
401835654LOC132441850STARR-positive B cell enhancer mm9_chr11:68245418-68245719116832274268323043Mouse
401835854LOC132441849STARR-positive B cell enhancer ABC_E1827116747968967479990Mouse
401839765LOC132441846STARR-positive B cell enhancer ABC_E2356116486951564869816Mouse
401838768LOC132441848STARR-positive B cell enhancer ABC_E10680116745513767455437Mouse
401841350LOC132441847STARR-positive B cell enhancer ABC_E8414116687569966876000Mouse
401841709LOC132441851STARR-positive B cell enhancer ABC_E3959116838935068389651Mouse
401841244LOC132441852STARR-positive B cell enhancer ABC_E6997116838988268390183Mouse

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4141084Spqq1_msperm quality QTL 1 (mouse)Not determined5406567063319522Mouse
1302186Blmpf2_mbleomycin-induced pulmonary fibrosis 2 (mouse)Not determined115406567067078411Mouse
4142148Ckdbp2_mchronic kidney disease blood pressure locus 2 (mouse)Not determined115408094165103841Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5528498572209927Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115849055574754758Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
11532697Sluc36_msusceptibility to lung cancer 36 (mouse)115925661769482699Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
4141642Ltxs2_mlethal factor toxin susceptibility 2 (mouse)Not determined116304211368500330Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116331940781830473Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116331940794063918Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116707819179813912Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse


Additional Information

Database Acc Id Source(s)
MGD MGI:3609213 MouseQtl

RGD Curation Notes
Note Type Note Reference