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Gene: Ddx52 (DExD box helicase 52) Mus musculus

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Symbol:

Ddx52

Name:

DExD box helicase 52

RGD ID:

1551975

MGI Page

MGI

Description:

Predicted to enable several functions, including ATP binding activity; ATP hydrolysis activity; and RNA helicase activity. Predicted to be involved in maturation of SSU-rRNA. Predicted to be located in nucleolus. Is expressed in heart and limb. Orthologous to human DDX52 (DExD-box helicase 52).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

2700029C06Rik; ATP-dependent RNA helicase ROK1-like; DEAD (Asp-Glu-Ala-Asp) box polypeptide 52; DEAD box protein 52; DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 52; probable ATP-dependent RNA helicase DDX52; RO; ROK1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	DDX52 (DExD-box helicase 52)	HGNC	Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, Panther
Rattus norvegicus (Norway rat):	Ddx52 (DExD-box helicase 52)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ddx52 (DExD-box helicase 52)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	DDX52 (DExD-box helicase 52)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	DDX52 (DExD-box helicase 52)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ddx52 (DExD-box helicase 52)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	DDX52 (DExD-box helicase 52)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	DDX52 (DExD-box helicase 52)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ddx52 (DExD-box helicase 52)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Ddx52 (DExD-box helicase 52)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	DDX52 (DExD-box helicase 52)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ddx52 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 52)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Drosophila melanogaster (fruit fly):	CG5589	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	ROK1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ddx-52	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ddx52	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	83,831,659 - 83,853,914 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	83,832,888 - 83,853,914 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	83,942,090 - 83,963,088 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	83,942,062 - 83,963,088 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	83,755,592 - 83,776,590 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	83,758,373 - 83,778,385 (+)	NCBI		MGSCv36	mm8
Celera	11	93,547,131 - 93,568,131 (+)	NCBI		Celera
Cytogenetic Map	11	C	NCBI
cM Map	11	51.24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ddx52	Mouse	autism spectrum disorder		ISO	DDX52 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Autism spectrum disorder	ClinVar	PMID:21844811 more ...
Ddx52	Mouse	autistic disorder		ISO	DDX52 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Autism	ClinVar	PMID:21681106 and PMID:30208311
Ddx52	Mouse	chromosome 17q12 deletion syndrome		ISO	DDX52 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Chromosome 17q12 deletion syndrome	ClinVar	PMID:17924346 more ...
Ddx52	Mouse	hyperphosphatasia with impaired intellectual development syndrome 5		ISO	DDX52 (Homo sapiens)	8554872	ClinVar Annotator: match by term: GLYCOSYLPHOSPHATIDYLINOSITOL BIOSYNTHESIS DEFECT 11	ClinVar	PMID:12148114 more ...
Ddx52	Mouse	Neurodevelopmental Disorders		ISO	DDX52 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Neurodevelopmental disorder	ClinVar	PMID:25741868
Ddx52	Mouse	schizophrenia		ISO	DDX52 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Schizophrenia	ClinVar	PMID:21681106 and PMID:30208311

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ddx52	Mouse	1,2-dimethylhydrazine	multiple interactions	EXP		6480464	[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in increased expression of DDX52 mRNA	CTD	PMID:22206623
Ddx52	Mouse	1-chloro-2,4-dinitrobenzene	affects binding	ISO	DDX52 (Homo sapiens)	6480464	Dinitrochlorobenzene binds to DDX52 protein	CTD	PMID:32991956
Ddx52	Mouse	2,3,7,8-tetrachlorodibenzodioxine	multiple interactions	EXP		6480464	[Tetrachlorodibenzodioxin co-treated with AHR gene mutant form] results in decreased expression of DDX52 mRNA	CTD	PMID:19465110
Ddx52	Mouse	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	EXP		6480464	Tetrachlorodibenzodioxin results in decreased expression of DDX52 mRNA	CTD	PMID:24680724
Ddx52	Mouse	2,3,7,8-tetrachlorodibenzodioxine	affects expression	EXP		6480464	Tetrachlorodibenzodioxin affects the expression of DDX52 mRNA	CTD	PMID:21570461
Ddx52	Mouse	2,4-dinitrotoluene	affects expression	ISO	Ddx52 (Rattus norvegicus)	6480464	2 and 4-dinitrotoluene affects the expression of DDX52 mRNA	CTD	PMID:21346803
Ddx52	Mouse	2-hydroxypropanoic acid	decreases expression	ISO	DDX52 (Homo sapiens)	6480464	Lactic Acid results in decreased expression of DDX52 mRNA	CTD	PMID:30851411
Ddx52	Mouse	3-chloropropane-1,2-diol	increases expression	ISO	Ddx52 (Rattus norvegicus)	6480464	alpha-Chlorohydrin results in increased expression of DDX52 protein	CTD	PMID:34915118
Ddx52	Mouse	4,4'-diaminodiphenylmethane	decreases expression	EXP		6480464	4 and 4'-diaminodiphenylmethane results in decreased expression of DDX52 mRNA	CTD	PMID:18648102
Ddx52	Mouse	acrylamide	increases expression	ISO	Ddx52 (Rattus norvegicus)	6480464	Acrylamide results in increased expression of DDX52 mRNA	CTD	PMID:15749267
Ddx52	Mouse	aflatoxin B1	increases expression	EXP		6480464	Aflatoxin B1 results in increased expression of DDX52 mRNA	CTD	PMID:19770486
Ddx52	Mouse	aflatoxin B1	decreases methylation	ISO	DDX52 (Homo sapiens)	6480464	Aflatoxin B1 results in decreased methylation of DDX52 gene	CTD	PMID:27153756
Ddx52	Mouse	aflatoxin B1	increases expression	ISO	DDX52 (Homo sapiens)	6480464	Aflatoxin B1 results in increased expression of DDX52 mRNA	CTD	PMID:27153756
Ddx52	Mouse	ammonium chloride	affects expression	ISO	Ddx52 (Rattus norvegicus)	6480464	Ammonium Chloride affects the expression of DDX52 mRNA	CTD	PMID:16483693
Ddx52	Mouse	aristolochic acid A	increases expression	ISO	DDX52 (Homo sapiens)	6480464	aristolochic acid I results in increased expression of DDX52 mRNA	CTD	PMID:33212167
Ddx52	Mouse	arsane	affects methylation	ISO	DDX52 (Homo sapiens)	6480464	Arsenic affects the methylation of DDX52 gene	CTD	PMID:25304211
Ddx52	Mouse	arsenic atom	affects methylation	ISO	DDX52 (Homo sapiens)	6480464	Arsenic affects the methylation of DDX52 gene	CTD	PMID:25304211
Ddx52	Mouse	benzene	increases expression	ISO	DDX52 (Homo sapiens)	6480464	Benzene results in increased expression of DDX52 mRNA	CTD	PMID:19162166
Ddx52	Mouse	beta-lapachone	increases expression	ISO	DDX52 (Homo sapiens)	6480464	beta-lapachone results in increased expression of DDX52 mRNA	CTD	PMID:38218311
Ddx52	Mouse	bisphenol A	decreases methylation	ISO	DDX52 (Homo sapiens)	6480464	bisphenol A results in decreased methylation of DDX52 gene	CTD	PMID:22576693
Ddx52	Mouse	bisphenol A	multiple interactions	ISO	DDX52 (Homo sapiens)	6480464	[[ginger extract results in increased abundance of Oils and Volatile] which co-treated with bisphenol A] affects the expression of DDX52 protein	CTD	PMID:33376534
Ddx52	Mouse	bisphenol A	increases expression	ISO	Ddx52 (Rattus norvegicus)	6480464	bisphenol A results in increased expression of DDX52 mRNA	CTD	PMID:25181051
Ddx52	Mouse	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of DDX52 mRNA	CTD	PMID:26063408
Ddx52	Mouse	bisphenol A	increases expression	ISO	DDX52 (Homo sapiens)	6480464	bisphenol A results in increased expression of DDX52 mRNA	CTD	PMID:22576693
Ddx52	Mouse	CGP 52608	multiple interactions	ISO	DDX52 (Homo sapiens)	6480464	CGP 52608 promotes the reaction [RORA protein binds to DDX52 gene]	CTD	PMID:28238834
Ddx52	Mouse	chlorpyrifos	decreases expression	EXP		6480464	Chlorpyrifos results in decreased expression of DDX52 mRNA	CTD	PMID:37019170
Ddx52	Mouse	clofibrate	multiple interactions	EXP		6480464	[Clofibrate co-treated with Acetaminophen] affects the expression of DDX52 mRNA and PPARA affects the reaction [[Clofibrate co-treated with Acetaminophen] affects the expression of DDX52 mRNA]	CTD	PMID:17585979
Ddx52	Mouse	copper atom	increases expression	ISO	Ddx52 (Rattus norvegicus)	6480464	Copper results in increased expression of DDX52 mRNA	CTD	PMID:22465980
Ddx52	Mouse	copper(0)	increases expression	ISO	Ddx52 (Rattus norvegicus)	6480464	Copper results in increased expression of DDX52 mRNA	CTD	PMID:22465980
Ddx52	Mouse	deoxynivalenol	increases expression	ISO	DDX52 (Homo sapiens)	6480464	deoxynivalenol results in increased expression of DDX52 mRNA	CTD	PMID:31863870
Ddx52	Mouse	dioxygen	decreases expression	ISO	DDX52 (Homo sapiens)	6480464	Oxygen deficiency results in decreased expression of DDX52 mRNA	CTD	PMID:24236059
Ddx52	Mouse	enzyme inhibitor	multiple interactions	ISO	DDX52 (Homo sapiens)	6480464	[Enzyme Inhibitors results in decreased activity of OGA protein] which results in increased O-linked glycosylation of DDX52 protein	CTD	PMID:23301498
Ddx52	Mouse	fipronil	decreases expression	ISO	Ddx52 (Rattus norvegicus)	6480464	fipronil results in decreased expression of DDX52 mRNA	CTD	PMID:34044035
Ddx52	Mouse	folic acid	multiple interactions	EXP		6480464	[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in increased expression of DDX52 mRNA	CTD	PMID:22206623
Ddx52	Mouse	FR900359	decreases phosphorylation	ISO	DDX52 (Homo sapiens)	6480464	FR900359 results in decreased phosphorylation of DDX52 protein	CTD	PMID:37730182
Ddx52	Mouse	gentamycin	increases expression	ISO	Ddx52 (Rattus norvegicus)	6480464	Gentamicins results in increased expression of DDX52 mRNA	CTD	PMID:33387578
Ddx52	Mouse	lead(0)	affects expression	ISO	DDX52 (Homo sapiens)	6480464	Lead affects the expression of DDX52 mRNA	CTD	PMID:28903495
Ddx52	Mouse	linsidomine	increases oxidation	ISO	Ddx52 (Rattus norvegicus)	6480464	linsidomine results in increased oxidation of DDX52 protein	CTD	PMID:28086193
Ddx52	Mouse	methamphetamine	decreases expression	ISO	Ddx52 (Rattus norvegicus)	6480464	Methamphetamine results in decreased expression of DDX52 mRNA	CTD	PMID:19564919
Ddx52	Mouse	methidathion	increases expression	EXP		6480464	methidathion results in increased expression of DDX52 mRNA	CTD	PMID:34813904
Ddx52	Mouse	methyl methanesulfonate	increases expression	ISO	DDX52 (Homo sapiens)	6480464	Methyl Methanesulfonate results in increased expression of DDX52 mRNA	CTD	PMID:23649840
Ddx52	Mouse	paracetamol	multiple interactions	EXP		6480464	[Clofibrate co-treated with Acetaminophen] affects the expression of DDX52 mRNA and PPARA affects the reaction [[Clofibrate co-treated with Acetaminophen] affects the expression of DDX52 mRNA]	CTD	PMID:17585979
Ddx52	Mouse	quercetin	decreases expression	ISO	DDX52 (Homo sapiens)	6480464	Quercetin results in decreased expression of DDX52 mRNA	CTD	PMID:21632981
Ddx52	Mouse	rac-lactic acid	decreases expression	ISO	DDX52 (Homo sapiens)	6480464	Lactic Acid results in decreased expression of DDX52 mRNA	CTD	PMID:30851411
Ddx52	Mouse	resveratrol	decreases expression	ISO	Ddx52 (Rattus norvegicus)	6480464	resveratrol results in decreased expression of DDX52 mRNA	CTD	PMID:25905778
Ddx52	Mouse	silicon dioxide	increases expression	ISO	DDX52 (Homo sapiens)	6480464	Silicon Dioxide results in increased expression of DDX52 mRNA	CTD	PMID:25351596
Ddx52	Mouse	sodium arsenite	increases stability	ISO	DDX52 (Homo sapiens)	6480464	sodium arsenite results in increased stability of DDX52 mRNA	CTD	PMID:25493608
Ddx52	Mouse	T-2 toxin	increases expression	ISO	DDX52 (Homo sapiens)	6480464	T-2 Toxin results in increased expression of DDX52 mRNA	CTD	PMID:31863870
Ddx52	Mouse	temozolomide	increases expression	ISO	DDX52 (Homo sapiens)	6480464	Temozolomide results in increased expression of DDX52 mRNA	CTD	PMID:31758290
Ddx52	Mouse	tert-butyl hydroperoxide	increases expression	ISO	DDX52 (Homo sapiens)	6480464	tert-Butylhydroperoxide results in increased expression of DDX52 mRNA	CTD	PMID:15336504
Ddx52	Mouse	tetrachloromethane	increases expression	EXP		6480464	Carbon Tetrachloride results in increased expression of DDX52 mRNA	CTD	PMID:27339419 and PMID:31919559
Ddx52	Mouse	thioacetamide	increases expression	ISO	Ddx52 (Rattus norvegicus)	6480464	Thioacetamide results in increased expression of DDX52 mRNA	CTD	PMID:34492290
Ddx52	Mouse	triphenyl phosphate	affects expression	ISO	DDX52 (Homo sapiens)	6480464	triphenyl phosphate affects the expression of DDX52 mRNA	CTD	PMID:37042841
Ddx52	Mouse	urethane	decreases expression	ISO	DDX52 (Homo sapiens)	6480464	Urethane results in decreased expression of DDX52 mRNA	CTD	PMID:28818685
Ddx52	Mouse	valproic acid	decreases expression	ISO	Ddx52 (Rattus norvegicus)	6480464	Valproic Acid results in decreased expression of DDX52 mRNA	CTD	PMID:23665938
Ddx52	Mouse	valproic acid	decreases expression	ISO	DDX52 (Homo sapiens)	6480464	Valproic Acid results in decreased expression of DDX52 mRNA	CTD	PMID:23179753 and PMID:28001369
Ddx52	Mouse	valproic acid	affects expression	ISO	DDX52 (Homo sapiens)	6480464	Valproic Acid affects the expression of DDX52 mRNA	CTD	PMID:25979313
Ddx52	Mouse	vincristine	increases expression	ISO	DDX52 (Homo sapiens)	6480464	Vincristine results in increased expression of DDX52 mRNA	CTD	PMID:23649840

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ddx52	Mouse	maturation of SSU-rRNA	involved_in	IEA	InterPro:IPR044764	2290270		InterPro	GO_REF:0000002
Ddx52	Mouse	maturation of SSU-rRNA	involved_in	IBA	PANTHER:PTN002774333 and SGD:S000003139	2290270		GO_Central	GO_REF:0000033

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ddx52	Mouse	nucleolus	located_in	IEA	UniProtKB-SubCell:SL-0188	2290270		UniProt	GO_REF:0000044

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ddx52	Mouse	ATP binding	enables	IEA	UniProtKB-KW:KW-0067	2290270		UniProt	GO_REF:0000043
Ddx52	Mouse	ATP hydrolysis activity	enables	IEA	RHEA:13065	2290270		RHEA	GO_REF:0000116
Ddx52	Mouse	RNA binding	enables	IEA	UniProtKB-KW:KW-0694	2290270		UniProt	GO_REF:0000043
Ddx52	Mouse	RNA helicase activity	enables	IEA	EC:3.6.4.13	2290270		UniProt	GO_REF:0000003

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ddx52	Mouse	abnormal bone mineralization		IEA		5509061		MGI
Ddx52	Mouse	decreased body weight		IEA		5509061		MGI
Ddx52	Mouse	decreased NK cell number		IEA		5509061		MGI

#	Reference Title	Reference Citation
1.	Functional annotation of a full-length mouse cDNA collection.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2.	MGDs mouse GO annotations	MGD data from the GO Consortium
3.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Database resources of the National Center for Biotechnology Information.	Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.

PMID:10349636	PMID:10922068	PMID:11042159	PMID:11076861	PMID:11544199	PMID:12477932	PMID:14610273	PMID:15489334	PMID:15782199	PMID:16141072	PMID:16141073	PMID:16870172
PMID:21677750	PMID:21873635	PMID:24457600	PMID:38355793

Ddx52
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	83,831,659 - 83,853,914 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	83,832,888 - 83,853,914 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	83,942,090 - 83,963,088 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	83,942,062 - 83,963,088 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	83,755,592 - 83,776,590 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	83,758,373 - 83,778,385 (+)	NCBI		MGSCv36	mm8
Celera	11	93,547,131 - 93,568,131 (+)	NCBI		Celera
Cytogenetic Map	11	C	NCBI
cM Map	11	51.24	NCBI

DDX52
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	37,609,739 - 37,643,446 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	37,609,739 - 37,643,446 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	35,969,787 - 36,003,475 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	33,046,526 - 33,077,600 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	33,046,525 - 33,077,600	NCBI
Celera	17	32,795,453 - 32,826,538 (-)	NCBI		Celera
Cytogenetic Map	17	q12	NCBI
HuRef	17	31,909,783 - 31,940,869 (-)	NCBI		HuRef
CHM1_1	17	36,003,881 - 36,035,027 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	38,596,713 - 38,630,405 (-)	NCBI		T2T-CHM13v2.0

Ddx52
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	69,322,062 - 69,344,856 (+)	NCBI		GRCr8
mRatBN7.2	10	68,824,594 - 68,847,400 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	68,824,645 - 68,848,266 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	73,444,647 - 73,467,375 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	72,949,656 - 72,972,384 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	68,414,078 - 68,436,804 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	71,253,667 - 71,276,397 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	71,253,598 - 71,277,277 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	70,864,522 - 70,888,590 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	72,222,689 - 72,245,419 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	72,237,058 - 72,259,788 (+)	NCBI
Celera	10	67,754,185 - 67,776,912 (+)	NCBI		Celera
Cytogenetic Map	10	q26	NCBI

Ddx52
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955451	409,249 - 438,951 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955451	409,827 - 437,757 (+)	NCBI	ChiLan1.0	ChiLan1.0

DDX52
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	27,110,284 - 27,140,265 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	28,993,807 - 29,023,696 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	19,433,036 - 19,466,975 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	19,734,568 - 19,764,235 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	19,734,588 - 19,763,689 (+)	Ensembl	panpan1.1		panPan2

DDX52
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	37,368,243 - 37,390,526 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	36,591,966 - 36,614,581 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	38,178,409 - 38,201,242 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	38,178,113 - 38,201,194 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	36,959,168 - 36,982,024 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	37,246,741 - 37,269,434 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	37,333,761 - 37,356,661 (-)	NCBI		UU_Cfam_GSD_1.0

Ddx52
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	36,315,998 - 36,323,696 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	743,482 - 760,712 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	743,482 - 758,886 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DDX52
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	39,072,314 - 39,143,685 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	39,072,310 - 39,095,558 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	40,713,951 - 40,739,656 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DDX52
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	30,138,075 - 30,168,803 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	30,138,084 - 30,170,332 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	861,831 - 892,190 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ddx52
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624871	4,596,313 - 4,622,634 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Ddx52
687 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	492
Count of miRNA genes:	380
Interacting mature miRNAs:	420
Transcripts:	ENSMUST00000049257, ENSMUST00000130982
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
27226783	Tibl5_m	tibia length 5, 5 week (mouse)					11	68190826	101890826	Mouse
1300628	Lgth6_m	body length 6 (mouse)			Not determined		11	66733420	100733652	Mouse
4141367	Inf1_m	acute ozone induced inflammation (mouse)			Not determined			44630038	113058009	Mouse
1558812	Rafar_m	retinoic acid induced forelimb autopod reduction (mouse)			Not determined		11	70691198	104691366	Mouse
1300766	Skull16_m	skull morphology 16 (mouse)			Not determined		11	81574481	115574636	Mouse
1301404	Sbmd4_m	spinal bone mineral density 4 (mouse)			Not determined		11	72019649	106019734	Mouse
4142121	Tmc1m2_m	Tmc1 modifier 2 (mouse)			Not determined		11	56864027	114157957	Mouse
27226758	Femd3_m	femur midshaft diameter 3, 5 week (mouse)					11	80890826	101890826	Mouse
1301640	Lore4_m	loss of righting induced by ethanol 4 (mouse)			Not determined		11	79156009	107616472	Mouse
10412288	Carg4_m	Candida albicans resistance gene 4 (mouse)			Not determined		11	81810267	115810267	Mouse
4141982	Skts-fp2_m	skin tumor susceptibility in FVB and PWK 2 (mouse)			Not determined			58719266	85066529	Mouse
1357878	Mastr_m	modifier of astrocytoma (mouse)			Not determined		11	45708581	89818733	Mouse
1301681	Sle13_m	systematic lupus erythematosus susceptibility 13 (mouse)			Not determined		11	70691198	104691366	Mouse
1300784	Prdt3_m	prion disease incubation time 3 (mouse)			Not determined		11	66733420	100733652	Mouse
4141339	Nilac2_m	nicotine induced locomotor activity 2 (mouse)			Not determined		11	70691198	104691366	Mouse
10413882	Moe1_m	modifier of epilepsy 1 (mouse)					11	77770978	111771099	Mouse
11039501	Ltpr6a_m	Leishmania tropica response 6a (mouse)					11	64830336	98830473	Mouse
13208559	Wght10_m	weight 10 (mouse)					11	3950000	88890826	Mouse
13524840	Ppiq9a_m	prepulse inhibition QTL 9a (mouse)					11	52494385	86494385	Mouse
11039502	Ltpr6b_m	Leishmania tropica response 6b (mouse)					11	64830336	98830473	Mouse
13208558	Lgth12_m	body length 12 (mouse)					11	3950000	94890826	Mouse
10045616	Heal25_m	wound healing/regeneration 25 (mouse)			Not determined		11	77437183	111437322	Mouse
1300664	Etohcta9_m	ethanol conditioned taste aversion 9 (mouse)			Not determined		11	57754660	91754758	Mouse
1301310	Tmevd5_m	Theiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)			Not determined		11	72726125	106726289	Mouse
1300924	Ity2_m	immunity to S. typhimurium 2 (mouse)			Not determined		1	58508030	87695238	Mouse
13208569	Bmiq10_m	body mass index QTL 10 (mouse)					11	35890827	84890826	Mouse
11039515	Ltpr6_m	Leishmania tropica response 6 (mouse)					11	64830336	98830473	Mouse
4142348	Pstc2_m	periosteal circumference 2 (mouse)			Not determined		11	72818615	106818733	Mouse
1300774	Pgia7_m	proteoglycan induced arthritis 7 (mouse)			Not determined		11	53390588	87390737	Mouse
1301414	Heal10_m	wound healing/regeneration 10 (mouse)			Not determined		11	77437183	111437322	Mouse
1300651	Pcyts3_m	plasmacytoma susceptibility 3 (mouse)			Not determined		11	70691198	104691366	Mouse
1301546	Pcir2_m	periosteal circumference 2 (mouse)			Not determined		11	66733420	100733652	Mouse
1300905	Scc6_m	colon tumor susceptibility 6 (mouse)			Not determined		11	6880277	89019734	Mouse
1300649	Crhq1_m	compensatory renal hypertrophy QTL 1 (mouse)			Not determined		11	81574481	115574636	Mouse
14746970	Manh71_m	mandible shape 71 (mouse)					11	79416257	113416257	Mouse
10043865	T2dm5sa_m	type 2 diabetes mellitus 5 in SMXA RI mice (mouse)			Not determined		11	79813759	104502698	Mouse
39128214	Lwq20_m	liver weight QTL 20 (mouse)					11	12268637	118022724	Mouse
10043866	Adip19_m	adiposity 19 (mouse)			Not determined		11	72818615	106818733	Mouse
1301072	Eae22_m	experimental allergic encephalomyelitis 22 (mouse)			Not determined		11	82377698	116377820	Mouse
1301078	Alcp2_m	alcohol preference locus 2 (mouse)			Not determined		11	72209796	84731462	Mouse
10412246	Dfs2_m	dental fluorosis suseptibility 2 (mouse)			Not determined		11	21807364	95881231	Mouse
11038695	Par8_m	pulmonary adenoma resistance 8 (mouse)					11	77063779	111063918	Mouse
1357766	Si5lq6_m	serum IGFBP-5 level QTL 6 (mouse)			Not determined		11	66733420	100733652	Mouse
1301319	Dautb4_m	dopamine uptake transporter binding 4 (mouse)			Not determined		11	62156005	96156153	Mouse
1301830	Ssta4_m	susceptibility to Salmonella typhimurium antigens 4 (mouse)			Not determined		11	50078191	84078411	Mouse
1301833	Tbbmd5_m	total body bone mineral density 5 (mouse)			Not determined		11	66733420	100733652	Mouse
4141012	Femwf6_m	femur work to failure 6 (mouse)			Not determined			66733420	100733652	Mouse
1301987	Pid3_m	prior incubation determinant 3 (mouse)			Not determined		11	61686820	88699728	Mouse
27226730	Tibmd1_m	tibia midshaft diameter 1, 5 week (mouse)					11	62590826	109390826	Mouse
4141894	Nidd6k_m	Nidd6 on KK-A (mouse)			Not determined			19124204	96897826	Mouse
10044004	Stzid3_m	streptozotocin induced diabetes susceptibility 3 (mouse)			Not determined		11	63319407	94063918	Mouse
1302124	Eae7_m	susceptibility to experimental allergic encephalomyelitis 7 (mouse)			Not determined		11	77573873	99377820	Mouse

UniSTS:236674

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	11	83,962,786 - 83,962,985	UniSTS	GRCm38
MGSCv37	11	83,776,288 - 83,776,487	UniSTS	GRCm37
Celera	11	93,567,829 - 93,568,028	UniSTS
Cytogenetic Map	11	C	UniSTS
Cytogenetic Map	11	B5	UniSTS

UniSTS:236675

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	11	83,943,601 - 83,943,859	UniSTS	GRCm38
MGSCv37	11	83,757,103 - 83,757,361	UniSTS	GRCm37
Celera	11	93,548,642 - 93,548,900	UniSTS
Cytogenetic Map	11	B5	UniSTS

D11Bhm146

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	11	83,960,499 - 83,960,617	UniSTS	GRCm38
MGSCv37	11	83,774,001 - 83,774,119	UniSTS	GRCm37
Celera	11	93,565,542 - 93,565,660	UniSTS
Cytogenetic Map	11	B5	UniSTS
cM Map	11	47.63	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NM_030096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_004937057	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AK019204	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK080767	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK133545	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK141200	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK166789	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK195121	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL645615	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC029094	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466556	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CJ142321	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CN539261	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000049257 ⟹ ENSMUSP00000048802

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	83,832,888 - 83,853,914 (+)	Ensembl
GRCm38.p6 Ensembl	11	83,942,062 - 83,963,088 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000130982

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	83,837,081 - 83,842,987 (+)	Ensembl
GRCm38.p6 Ensembl	11	83,946,255 - 83,952,161 (+)	Ensembl

RefSeq Acc Id:

NM_030096 ⟹ NP_084372

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	11	83,832,916 - 83,853,914 (+)	NCBI
GRCm38	11	83,942,090 - 83,963,088 (+)	ENTREZGENE
MGSCv37	11	83,755,592 - 83,776,590 (+)	RGD
Celera	11	93,547,131 - 93,568,131 (+)	RGD
cM Map	11		ENTREZGENE

Sequence:

show sequence

GACTTCCGCTACGGCCTGTGCGGAAGCAGTCGCGGATAGAAAGTGGTAAACGCAGGCGCCGGGAGGCCGTGGGGCCTTCTGGGTAAAGATGGATTCCTACGACCTGTTTCGCCGGCTTGGAGCCGGCG
CCAAGTTCGACGTGAAGCGCTTCTCAGCAGACGCTACTCGATTCCAGGTAGGAAAAAGGAAATTCGATTCCGAGTCTTTGGAGGTCCTGAAGGGACTAGACTTCTTCGGAAACAAGAAGTCCGTCTCA
GATGAATGTGGAGCATTGCAAATACACCAGGAGCCCCCAAATGAGGAGAAAACACAAGGGGTCCTGTTGGAAAGGAGTAAGGAGCCCAAGAAGAAAAAGAGAAAGAAGATGACTTCAGAAGTTCCTGC
TCAAGAAGACTTTGACGGTGGTATCCAGTGGACATCCTCTGTAGAAGCAAAGCTTCAAGATGAAAAAGTCAGTGGAGAGAAGAAGTTAACTTCAGGAAAGTTGGAACATCTCAGAAAGGAAAAGGTCA
ACTTCTTTCGGAACAAGCACAAGATACATGTCCAAGGAACTGATCTTCCTGACCCAATTGCTACATTTCAGCAACTTGACCAGGAATATAAAATCAATTCTAGATTGCTCCAGAATATTCTAGACGCA
GGCTTCCAAGTGCCCACACCAATTCAGATGCAAGCCATTCCAGTTATGCTGCATGGTCGGGAACTTCTGGCTTCTGCTCCAACCGGATCTGGGAAGACGTTGGCATTTAGCATCCCCATTTTAATGCA
GCTGAAACAACCAACAAATAAAGGCTTTAGAGCCCTGGTTATATCCCCAACCCGAGAACTTGCAAGCCAGATTCACAGAGAATTAATTAAAATATCTGAGGGTACAGGATTCAGAATACATATGATCC
ACAAAGCTGCAATAGCAGCTAAGAAATTTGGACCTAAATCATCTAAGAAGTTTGATATCCTTGTGACTACTCCAAATCGACTGATCTACTTGTTGAAGCAGGATCCACCAGGGATTGACCTAACAAAT
GTCGAGTGGCTGGTAGTAGATGAATCAGACAAACTGTTTGAAGATGGCAAAACTGGGTTTAGAGAGCAGCTGGCTTCCATTTTCCTGGCCTGCACATCGCCCAAGGTCAGAAGAGCAATGTTCAGCGC
AACTTTTGCGTACGACGTTGAACAGTGGTGCAAGCTCAACCTGGACAACGTCGTTTCCGTGTCCATTGGAGCAAGGAATTCTGCAGTCGAAACTGTTGAACAAGAGCTTCTCTTTGTTGGATCTGAGA
CTGGAAAACTTCTGGCCATGAGAGAACTTGTTAAAAAGGGTTTCAAGCCACCTGTTCTTGTTTTCGTTCAGTCCATTGAAAGAGCTAAAGAACTTTTCCATGAGCTCATATATGAAGGTATTAATGTG
GATGTCATTCATGCAGAAAGAACACAGCAGCAGCGAGATAACACAGTCCACAGCTTCAGAGCAGGAAAAATTTGGGTTCTTATTTGTACAGCCTTACTTGCAAGAGGGATTGACTTTAAAGGCGTAAA
CCTGGTCATCAATTATGATTTTCCCACCAGCTCAGTGGAGTACATCCATAGGATAGGTCGGACTGGAAGAGCAGGGAATAGGGGAAAGGCTGTTACATTTTTCACTGAAGATGATAAACCATTACTAA
GAAGTGTTGCCAATGTTATCCAGCAGGCTGGTTGTCCTGTGCCCGAATACATAAAAGGTTTCCAGAAACTACTAAGCAAACAAAAGAAAAAAATGATTAAGAAGCCGTTGGAAAGGGAGAGCATTTGT
ACAACTCCAAAGTACTTCTTAGAGCAAGCTAAACAGAAAAAGGTTGCTGGCCAAAACAGCAAGAAGAAAGAAACTCTCAAAGAGAAAAGTTAAAAAATAAATACCTTAGAAGGCAATCCCTGCAGTGT
AACTTATGAGCCTGGCATGGATTCTCATGGAGTACTTACAACCATCTTTACCAAACATTTGAAATCCACAAGGATATGAGAGGACAGAATGGTTCTGATGTAGTGATGCATCAAGCTTCACTTTGTAG
GTGGGATTTATACAATGAAAATAACAGGCATTGGCATTTCTGCCTGAATCCAGAGAGATACTTCTTATAGAAGAACAAGAGCCGATGCTAAAATAACACCCAAGTGTGGTGAACTCTTAAGGATTTTG
CCCTTCAAGTGTGAAGGAAAGTGTGATGCATGCTGTGGAGAGGCGTCTGGAACAGAATTTTAAAATAAAACCTTGAGTTTGAGTGCACCATCCACACTTGTGTGTATGGAGAGCCAGCGCTGTGTGGG
ATGCAAACAAGAGCAGCAGCACAGGCCAGACACAGGAAGGAGCCTAGCACTCCCTTTAGTGTTTCTTTGTGGTAGGAGCCACAGTAAGGAGGTCCCCCATCTGTGGTTATCCAAATTCCAGAGGATTG
GAAACTTGAGCCTGTTGAAATTGACCTGTACTGCACTGGGGAGGAAGCTTATGCTTAGCTGTCATAATGTTGCAACTGTAAGGTTATGATCAGCCTTTCCCTGTCTGACTTCATTCTCCATCATTTAA
CCATGTTCTTTCCTGTCTCTTTCCACCAAGATGACTGCCTGAAAGCAGATAGCACTCTATCCTATCCTGATGAGGAAGAACATTCCCGTTACACGATACACCTCGTTTCATTGTCTCAGATGCTTATC
TTTGCTGAGACTTGATGGGCTTCAGCCACCCTCCACAGAGAACTGTGATCATTTGGACCAAGGCAGTGCACAGTATGCAGGTTTTCCTTAATTACCTGCTTTGTACAGTGGAATAAAAAAGGCTTGGT
ACAAGTTGAAGCACTTAAGACTGGAGCCTAGAATTTCTCAGGGCCTGTGCTGCCACAGGACTACAACATAAGTGACTGCCAGCAACTGAATTAAGCCTGTTTCCTTTACTCTAGGCAGTTGATACTTT
AGTCTAAAATCAGCACAGTAGACCTCCTTTTAAATGTGTATTTGTTTTGAAAAGGGATCTCTGTATCCCAGACTGGCCTGGAACTCACAGCAATCCTCCTGTTTCAGCCCCTTTACTGCTGAGAATAC
AGACATGAGACTGATATTGAATAGATGGGATAAAGATTTAAAAAAAAAATCAGGCTTCATTTAAATAAACTGCTCTAGAGAATAAAAACTAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XR_004937057

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	11	83,831,659 - 83,843,024 (+)	NCBI

Sequence:

show sequence

GTCTATGCATTGTATTATTTATATTTTGATGTCTCCCAGTTTTGTTTCTCCAGCCTTCAGTCCTGAGCTTCAGACTCTTGGGTCCAAGTACCTAATTGGATGTCTTCACTTAATCAAGTAGAGATCTA
CATGTCTACAAACGTAACAATTCCATGATTCTCATTCTCACCAAAAGGCTGCTCTTCCTTTCTTCTTAGTTCAGTAAATGGCATGCCATCATCCCAGCTCAAACCACAATATTTAGCTACCTCTGGAT
CCATTTCCTCACCCTACACAAACTCCATCAGGTACATTAAACTCTATATCCAAACTGTAGCCCAAATCCATCCACATTTGAATAGCTATCAACCCAGATAAAAGCAACAGCTACTTTAGTCTCCATTT
CTACTCTTATCTGTTCCATGTCCCTTCTCCAAATAACTCCAAATAATCATGTATGGCCCTTTCACGAATTCATTCATCAAACATTTATGGAAAGCAAACAGAACCAGGGATACAATCATAAAGCAAAA
ATAGATCTTCATGTTTGTGGACTTACATTCCAGAAGACAGGTTATACAAAACTTAAAAAGTCGAGTAGTTCAAACACAATGAGAATGAATCTAAAAATCAAATGGGATAAACTAAGATAGTTGCTCCT
TCCATGAATTTTGGTTTTGCAGCATGTTTAGATTAAAACCTAAATACTTCATCATGCCCTTGTTACAGCGTTGAGACCTGGTTTGTTTGCCCCTGTAAGCTTAGCTCCAGCTACTCCAATTTTCTTTC
CTTTCTTCATTTCTTCCTTCATCCCTCCCCCCACCCACCCCCTTTTCCTTCTTTCTGTGGCACTGGAGAGCAACTCAGATCGGCTTCTGTTCTAACAAGGTTTCAGATCCGTTTCCTTCTTCAGATGG
GTTTTCTCTTCCCTGGAATGCTGTTCCCATGTCTTGGGAAAGTGGCCCCTTCTCAGTTCAAATTTGATTGAATTTAACCAATCTAACTAAACTAGCTTCTACCCCTTCTCAACCCATCACAGCTTTTA
ATTTGCCTCACGATGCTTTCCATTTTCCTCAGTTACAGTAACTGGTTAATAGTATCTCTGTCCTTTCTAAACGGTAACCGAAAATGCAGAATATTGGCGTGTTGCTCATCAAACTATCACTAAACGTC
TAGCACACTCCCACGCACAAGAAGCGTCGATTTTGGATTTTGTGAACGAATTCCCAGCTCACACGTTTTCCACGCCTATCACAGCCAGGCTCCGCCTCCTGGAGCGACTTCCGCTACGGCCTGTGCGG
AAGCAGTCGCGGATAGAAAGTGGTAAACGCAGGCGCCGGGAGGCCGTGGGGCCTTCTGGGTAAAGATGGATTCCTACGACCTGTTTCGCCGGCTTGGAGCCGGCGCCAAGTTCGACGTGAAGCGCTTC
TCAGCAGACGCTACTCGATTCCAGGTAGGAAAAAGGAAATTCGATTCCGAGTCTTTGGAGGTCCTGAAGGGACTAGACTTCTTCGGAAACAAGAAGTCCGTCTCAGATGAATGTGGAGCATTGCAAAT
ACACCAGGAGCCCCCAAATGAGGAGAAAACACAAGGGGTCCTGTTGGAAAGGAGTAAGGAGCCCAAGAAGAAAAAGAGAAAGAAGATGACTTCAGAAGTTCCTGCTCAAGAAGACTTTGACGGTGGTA
TCCAGTGGACATCCTCTGTAGAAGCAAAGCTTCAAGATGAAAAAGTCAGTGGAGAGAAGAAGTTAACTTCAGGAAAGTTGGAACATCTCAGAAAGGAAAAGGTCAACTTCTTTCGGAACAAGCACAAG
ATACATGTCCAAGGAACTGATCTTCCTGACCCAATTGCTACATTTCAGCAACTTGACCAGGAATATAAAATCAATTCTAGATTGCTCCAGAATATTCTAGACGCAGGCTTCCAAGTGCCCACACCAAT
TCAGATGCAAGCCATTCCAGTTATGCTGCATGGTCGGGAACTTCTGGCTTCTGCTCCAACCGGATCTGGGAAGACGTTGGCATTTAGCATCCCCATTTTAATGCAGCTGAAACAACCAACAAATAAAG
GCTTTAGAGCCCTGGTTATATCCCCAACCCGAGAACTTGCAAGCCAGATTCACAGAGAATTAATTAAAATATCTGAGGGTACAGGATTCAGAATACATATGATCCACAAAGCTGCAATAGCAGCTAAG
AAATTTGGACCTAAATCATCTAAGAAGTTTGATATCCTTGTGACTACTCCAAATCGACTGATCTACTTGTTGAAGCAGGATCCACCAGGGATTGACCTAACAAAGTACTATGTTCTCATGTCTTTCAT
TGACTCACTTATTTTATTAGTTTTCTTGTTACTGTGACTGATTATTTGACAAAGAGAAATTGAAGGAACGGAGGAAGGCCTGTGTGTGATTCATTGTGGCATTGGGGCAGGAAGTGTCGAGTGGCTGG
TAGTAGATGAATCAGACAAACTGTTTGAAGATGGCAAAACTGGGTTTAGAGAGCAGCTGGCTTCCATTTTCCT

hide sequence


Protein RefSeqs	NP_084372	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH29094	(Get FASTA)	NCBI Sequence Viewer
	BAB31600	(Get FASTA)	NCBI Sequence Viewer
	BAC38014	(Get FASTA)	NCBI Sequence Viewer
	BAE21716	(Get FASTA)	NCBI Sequence Viewer
	BAE39019	(Get FASTA)	NCBI Sequence Viewer
	EDL15728	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000048802
	ENSMUSP00000048802.8
GenBank Protein	Q8K301	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_084372 ⟸ NM_030096

- UniProtKB:

Q3UZY9 (UniProtKB/Swiss-Prot), Q8BV29 (UniProtKB/Swiss-Prot), Q8K301 (UniProtKB/Swiss-Prot), Q3TKX4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDSYDLFRRLGAGAKFDVKRFSADATRFQVGKRKFDSESLEVLKGLDFFGNKKSVSDECGALQIHQEPPNEEKTQGVLLERSKEPKKKKRKKMTSEVPAQEDFDGGIQWTSSVEAKLQDEKVSGEKKL
TSGKLEHLRKEKVNFFRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPTNKGFRALVISPTRELASQIHRELI
KISEGTGFRIHMIHKAAIAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLTNVEWLVVDESDKLFEDGKTGFREQLASIFLACTSPKVRRAMFSATFAYDVEQWCKLNLDNVVSVSIGARNSAV
ETVEQELLFVGSETGKLLAMRELVKKGFKPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRGK
AVTFFTEDDKPLLRSVANVIQQAGCPVPEYIKGFQKLLSKQKKKMIKKPLERESICTTPKYFLEQAKQKKVAGQNSKKKETLKEKS

hide sequence

Ensembl Acc Id:

ENSMUSP00000048802 ⟸ ENSMUST00000049257

Protein Domains

DEAD-box RNA helicase Q Helicase ATP-binding Helicase C-terminal

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q8K301-F1-model_v2	AlphaFold	Q8K301	1-598	view protein structure

RGD ID:

6820707

Promoter ID:

MM_KWN:8928

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

NM_030096_DDX52, OTTMUST00000001912

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	11	83,755,309 - 83,755,809 (+)	MPROMDB

RGD ID:

8675934

Promoter ID:

EPDNEW_M15998

Type:

initiation region

Name:

Ddx52_1

Description:

Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	11	83,942,165 - 83,942,225	EPDNEW

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000020677	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000049257	ENTREZGENE
	ENSMUST00000049257.8	UniProtKB/Swiss-Prot
Gene3D-CATH	3.40.50.300	UniProtKB/Swiss-Prot
InterPro	DDX52/Rok1_DEADc	UniProtKB/Swiss-Prot
	DEAD/DEAH_box_helicase_dom	UniProtKB/Swiss-Prot
	DEAD_box_RNA_helicase	UniProtKB/Swiss-Prot
	Helicase_ATP-bd	UniProtKB/Swiss-Prot
	Helicase_C	UniProtKB/Swiss-Prot
	P-loop_NTPase	UniProtKB/Swiss-Prot
	RNA_helicase_DEAD_Q_motif	UniProtKB/Swiss-Prot
KEGG Report	mmu:78394	UniProtKB/Swiss-Prot
MGD	MGI:1925644	ENTREZGENE
NCBI Gene	78394	ENTREZGENE
PANTHER	ATP-DEPENDENT RNA HELICASE	UniProtKB/Swiss-Prot
	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	UniProtKB/Swiss-Prot
Pfam	DEAD	UniProtKB/Swiss-Prot
	Helicase_C	UniProtKB/Swiss-Prot
PhenoGen	Ddx52	PhenoGen
PROSITE	HELICASE_ATP_BIND_1	UniProtKB/Swiss-Prot
	HELICASE_CTER	UniProtKB/Swiss-Prot
	Q_MOTIF	UniProtKB/Swiss-Prot
SMART	DEXDc	UniProtKB/Swiss-Prot
	HELICc	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF52540	UniProtKB/Swiss-Prot
UniProt	DDX52_MOUSE	UniProtKB/Swiss-Prot
	Q3TKX4	ENTREZGENE, UniProtKB/TrEMBL
	Q3UZY9	ENTREZGENE
	Q8BV29	ENTREZGENE
	Q8K301	ENTREZGENE
	Q9CS33_MOUSE	UniProtKB/TrEMBL
UniProt Secondary	Q3UZY9	UniProtKB/Swiss-Prot
	Q8BV29	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2020-04-07	Ddx52	DExD box helicase 52	Ddx52	DEAD (Asp-Glu-Ala-Asp) box polypeptide 52	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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Imported Disease Annotations - ClinVar

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