Trpv5 (transient receptor potential cation channel, subfamily V, member 5) - Rat Genome Database

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Gene: Trpv5 (transient receptor potential cation channel, subfamily V, member 5) Mus musculus
Analyze
Symbol: Trpv5
Name: transient receptor potential cation channel, subfamily V, member 5
RGD ID: 1551251
MGI Page MGI
Description: Enables calcium channel activity. Involved in calcium ion homeostasis; calcium ion transmembrane transport; and regulation of urine volume. Located in apical plasma membrane. Part of calcium channel complex. Is expressed in central nervous system; metanephros; and sensory organ. Orthologous to human TRPV5 (transient receptor potential cation channel subfamily V member 5).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: calcium transport protein 2; CaT; CAT2; D630033B11; ECaC; ECAC1; epithelial calcium channel 1; MGC129346; MGC129347; osm-9-like TRP channel 3; OTRPC3; transient receptor potential cation channel subfamily V member 5
RGD Orthologs
Human
Rat
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39641,628,595 - 41,658,158 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl641,629,107 - 41,657,703 (-)EnsemblGRCm39 Ensembl
GRCm38641,651,661 - 41,681,224 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl641,652,173 - 41,680,769 (-)EnsemblGRCm38mm10GRCm38
MGSCv37641,602,769 - 41,630,722 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36641,582,737 - 41,610,262 (-)NCBIMGSCv36mm8
Celera641,605,358 - 41,633,307 (-)NCBICelera
Cytogenetic Map6B2.1NCBI
cM Map619.83NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. MGD IEA MGD IEA
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Disrupted placental vitamin D metabolism and calcium signaling in gestational diabetes and pre-eclampsia patients. Varshney S, etal., Endocrine. 2023 Apr;80(1):191-200. doi: 10.1007/s12020-022-03272-9. Epub 2022 Dec 8.
8. International Union of Basic and Clinical Pharmacology. LXXVI. Current progress in the mammalian TRP ion channel family. Wu LJ, etal., Pharmacol Rev. 2010 Sep;62(3):381-404. doi: 10.1124/pr.110.002725.
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12077127   PMID:12205031   PMID:12477932   PMID:12574114   PMID:12660155   PMID:14679186   PMID:15100231   PMID:15123711  
PMID:15355307   PMID:15665527   PMID:15902302   PMID:16141072   PMID:16141073   PMID:16148038   PMID:16239475   PMID:16291808   PMID:16352746   PMID:16354700   PMID:16380433   PMID:16460286  
PMID:16565876   PMID:16602821   PMID:16705151   PMID:17005931   PMID:17012263   PMID:17200157   PMID:17565273   PMID:18597625   PMID:18606998   PMID:19322198   PMID:19470676   PMID:19767875  
PMID:19834762   PMID:19922080   PMID:19965988   PMID:21290301   PMID:21873635   PMID:22266179   PMID:22407925   PMID:23383183   PMID:23466996   PMID:23747339   PMID:24150765   PMID:24434184  
PMID:24557712   PMID:24828496   PMID:26747426   PMID:27102152   PMID:28527294   PMID:28847650   PMID:30063124   PMID:30786075   PMID:30916584   PMID:32098917   PMID:32325033   PMID:33859252  
PMID:33884443   PMID:35341793  


Genomics

Comparative Map Data
Trpv5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39641,628,595 - 41,658,158 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl641,629,107 - 41,657,703 (-)EnsemblGRCm39 Ensembl
GRCm38641,651,661 - 41,681,224 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl641,652,173 - 41,680,769 (-)EnsemblGRCm38mm10GRCm38
MGSCv37641,602,769 - 41,630,722 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36641,582,737 - 41,610,262 (-)NCBIMGSCv36mm8
Celera641,605,358 - 41,633,307 (-)NCBICelera
Cytogenetic Map6B2.1NCBI
cM Map619.83NCBI
TRPV5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387142,908,101 - 142,933,746 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7142,908,101 - 142,933,746 (-)EnsemblGRCh38hg38GRCh38
GRCh377142,605,267 - 142,630,843 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367142,315,770 - 142,340,942 (-)NCBINCBI36Build 36hg18NCBI36
Build 347142,122,103 - 142,147,742NCBI
Celera7137,442,506 - 137,467,678 (-)NCBICelera
Cytogenetic Map7q34NCBI
HuRef7136,943,932 - 136,969,107 (-)NCBIHuRef
CHM1_17142,542,454 - 142,567,695 (-)NCBICHM1_1
T2T-CHM13v2.07144,263,556 - 144,289,165 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27142,007,517 - 142,032,689 (-)NCBI
Trpv5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8471,503,085 - 71,531,134 (-)NCBIGRCr8
mRatBN7.2470,536,432 - 70,562,743 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl470,536,440 - 70,562,745 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx475,453,937 - 75,480,285 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0471,367,190 - 71,393,540 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0469,775,387 - 69,801,737 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0470,947,615 - 70,974,004 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl470,947,717 - 70,974,006 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04135,734,774 - 135,761,069 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4469,361,051 - 69,387,346 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1469,637,182 - 69,663,476 (-)NCBI
Celera465,501,468 - 65,527,672 (-)NCBICelera
Cytogenetic Map4q23NCBI
TRPV5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1166,647,070 - 6,678,080 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl166,650,574 - 6,676,963 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha167,560,511 - 7,591,662 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0166,557,909 - 6,589,144 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl166,561,502 - 6,588,989 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1166,511,319 - 6,542,465 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0166,362,763 - 6,393,915 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0166,421,480 - 6,452,686 (+)NCBIUU_Cfam_GSD_1.0
Trpv5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511812,503,983 - 12,529,339 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936527375,925 - 399,446 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936527375,922 - 399,446 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRPV5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl187,284,589 - 7,318,392 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1187,285,186 - 7,341,965 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2187,540,598 - 7,549,310 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRPV5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121111,787,214 - 111,816,893 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21111,787,694 - 111,811,847 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660728,510,491 - 8,535,369 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Trpv5
1579 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:516
Count of miRNA genes:322
Interacting mature miRNAs:356
Transcripts:ENSMUST00000031901
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396633110Mouse
4140989Spqq2_msperm quality QTL 2 (mouse)Not determined1771159851711719Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080576983Mouse
1357520Axtq2_manxiety QTL 2 (mouse)Not determined6450382348703611Mouse
10043869Cia6a_mcollagen induced arthritis QTL 6a (mouse)Not determined61211797146118069Mouse
11252142Mom12_mModifier of Min 12 (mouse)63387226167872400Mouse
1301850Fglu_mfasting glucose (mouse)Not determined61771159851711719Mouse
4141749Obrq2_mobesity resistance QTL 2 (mouse)Not determined1275122146751333Mouse
1300959Lxw2_mlupus BXSB x NZW 2 (mouse)Not determined63387226167872400Mouse
1300767Aliq4_macute lung injury QTL 4 (mouse)Not determined63627333270273435Mouse
1301724Pcd4ts1_mp-glycoprotein positive CD4 T cell subset 1 (mouse)Not determined61771159851711719Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396633110Mouse
14746995Manh60_mmandible shape 60 (mouse)63720266271202662Mouse
10412107Desp4_mdespair 4 (mouse)Not determined62004983054049830Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414773364675Mouse
4141094Hrtr1_mheart rate 1 (mouse)Not determined3674146370741463Mouse
4141988Obrq3_mobesity resistance QTL 3 (mouse)Not determined2829099362291115Mouse
11353841Bmiq3_mbody mass index QTL 3 (mouse)6450382348703611Mouse
11353840Bmiq2_mbody mass index QTL 2 (mouse)6450382345291115Mouse
1301326Trbv4c2_mT cell receptor beta variable 4 (mouse)Not determined64086823071356155Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487403016Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63864656092584431Mouse
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396633110Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396633110Mouse
12904940Edlmmq5_mextensor digitorum longus muscle mass QTL 5 (mouse)61961634653616346Mouse
4141782Mrdq5_mmodifier of retinal degeneration QTL 5 (mouse)Not determined3282758578215957Mouse
12904943Tammq4_mtibialis anterior muscle mass QTL 4 (mouse)61961634653616346Mouse
10412213Sxbq2_mSGC/Knj cross B6 QTL 2 (mouse)Not determined61991268571299759Mouse
12880424V25Dq4_mvitamin D inactive form serum level QTL 4 (mouse)64157698575576985Mouse
12880425V25Dq5_mvitamin D inactive form serum level QTL 5 (mouse)63267698066676980Mouse
1302051Sluc7_msusceptibility to lung cancer 7 (mouse)Not determined6929707443297168Mouse
4141454Obrq4_mobesity resistance QTL 4 (mouse)Not determined3170349965703611Mouse
14700690Ccs6_mcolon cancer susceptibility 6 (mouse)62377693457776934Mouse
1357539Bsbob3_mBSB obesity 3 (mouse)Not determined63644845670448576Mouse
27226726Tibmd7_mtibia midshaft diameter 7, 16 week (mouse)61769999953476985Mouse
12904952Gmmq4_mgastrocnemius muscle mass QTL 4 (mouse)61961634653616346Mouse
1357481Aaj2_manxiety in A/J 2 (mouse)Not determined6450382348703611Mouse
1301998Bts2_mbladder tumor susceptibility 2 (mouse)Not determined61275122146751333Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62499999979976983Mouse

Markers in Region
Trpv5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38641,652,660 - 41,652,779UniSTSGRCm38
MGSCv37641,602,659 - 41,602,778UniSTSGRCm37
Celera641,605,248 - 41,605,367UniSTS
Cytogenetic Map6B2.1UniSTS
cM Map619.83UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000031901   ⟹   ENSMUSP00000031901
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl641,629,107 - 41,657,703 (-)Ensembl
GRCm38.p6 Ensembl641,652,173 - 41,680,769 (-)Ensembl
Ensembl Acc Id: ENSMUST00000193503   ⟹   ENSMUSP00000141421
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl641,630,064 - 41,657,589 (-)Ensembl
GRCm38.p6 Ensembl641,653,130 - 41,680,655 (-)Ensembl
RefSeq Acc Id: NM_001007572   ⟹   NP_001007573
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39641,629,704 - 41,657,657 (-)NCBI
GRCm38641,652,770 - 41,680,723 (-)NCBI
MGSCv37641,602,769 - 41,630,722 (-)RGD
Celera641,605,358 - 41,633,307 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006505770   ⟹   XP_006505833
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39641,628,595 - 41,656,860 (-)NCBI
GRCm38641,651,661 - 41,679,926 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006505771   ⟹   XP_006505834
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39641,628,595 - 41,652,912 (-)NCBI
GRCm38641,651,661 - 41,675,978 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017321463   ⟹   XP_017176952
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39641,628,595 - 41,658,052 (-)NCBI
GRCm38641,651,661 - 41,681,118 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017321464   ⟹   XP_017176953
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39641,628,595 - 41,658,158 (-)NCBI
GRCm38641,651,661 - 41,681,224 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001007573   ⟸   NM_001007572
- UniProtKB: Q2TB50 (UniProtKB/Swiss-Prot),   P69744 (UniProtKB/Swiss-Prot),   A0A0A6YW69 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006505833   ⟸   XM_006505770
- Peptide Label: isoform X3
- UniProtKB: A0A0A6YW69 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006505834   ⟸   XM_006505771
- Peptide Label: isoform X4
- UniProtKB: A0A0A6YW69 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017176953   ⟸   XM_017321464
- Peptide Label: isoform X2
- UniProtKB: A0A0A6YW69 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017176952   ⟸   XM_017321463
- Peptide Label: isoform X1
- UniProtKB: Q2TB50 (UniProtKB/Swiss-Prot),   P69744 (UniProtKB/Swiss-Prot),   A0A0A6YW69 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000031901   ⟸   ENSMUST00000031901
Ensembl Acc Id: ENSMUSP00000141421   ⟸   ENSMUST00000193503
Protein Domains
Ion transport

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P69744-F1-model_v2 AlphaFold P69744 1-723 view protein structure

Promoters
RGD ID:6889514
Promoter ID:EPDNEW_M8208
Type:single initiation site
Name:Trpv5_1
Description:Mus musculus transient receptor potential cation channel, subfamilyV, member 5 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38641,680,736 - 41,680,796EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2429764 AgrOrtholog
Ensembl Genes ENSMUSG00000036899 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000031901 ENTREZGENE
  ENSMUST00000031901.11 UniProtKB/Swiss-Prot
  ENSMUST00000193503.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.25.40.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ion_trans_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRPV UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRPV5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRPV5/TRPV6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:194352 UniProtKB/Swiss-Prot
MGD MGI:2429764 ENTREZGENE
NCBI Gene 194352 ENTREZGENE
PANTHER PTHR10582 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL SUBFAMILY V MEMBER 5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ion_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Trpv5 PhenoGen
PRINTS ANKYRIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ECACCHANNEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ECACCHANNEL2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ANK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0A6YW69 ENTREZGENE, UniProtKB/TrEMBL
  P69744 ENTREZGENE
  Q2TB50 ENTREZGENE
  TRPV5_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q2TB50 UniProtKB/Swiss-Prot