Tmem106b (transmembrane protein 106B) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Tmem106b (transmembrane protein 106B) Mus musculus
Analyze
Symbol: Tmem106b
Name: transmembrane protein 106B
RGD ID: 1550447
MGI Page MGI
Description: Enables ATPase binding activity. Acts upstream of or within several processes, including lysosomal lumen acidification; lysosomal protein catabolic process; and positive regulation of dendrite development. Located in lysosome. Is expressed in several structures, including alimentary system; hemolymphoid system gland; integumental system; male reproductive gland or organ; and nervous system. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy 16. Orthologous to human TMEM106B (transmembrane protein 106B).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2310036D22Rik; 5830455K21Rik; 6430519M21Rik; AI428776; AI661344
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39613,069,758 - 13,089,268 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl613,069,758 - 13,089,268 (+)EnsemblGRCm39 Ensembl
GRCm38613,069,759 - 13,089,269 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl613,069,759 - 13,089,269 (+)EnsemblGRCm38mm10GRCm38
MGSCv37613,019,759 - 13,039,269 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36613,019,856 - 13,035,064 (+)NCBIMGSCv36mm8
Celera613,170,992 - 13,190,653 (+)NCBICelera
Cytogenetic Map6A1NCBI
cM Map65.38NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4,6-trinitrotoluene  (ISO)
2-methylcholine  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (EXP)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (EXP,ISO)
aflatoxin M1  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
Benzo[ghi]perylene  (EXP)
bisphenol A  (ISO)
bisphenol F  (EXP)
buspirone  (ISO)
butanal  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
carbon nanotube  (EXP)
clorgyline  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (EXP)
coumestrol  (ISO)
crocidolite asbestos  (EXP)
cyclosporin A  (EXP)
decabromodiphenyl ether  (ISO)
dicrotophos  (ISO)
diquat  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
fipronil  (ISO)
FR900359  (ISO)
glafenine  (ISO)
hydrogen peroxide  (ISO)
ketoconazole  (ISO)
mercury dichloride  (ISO)
methapyrilene  (ISO)
methimazole  (ISO)
methoxychlor  (ISO)
miconazole  (EXP)
nefazodone  (ISO)
nimesulide  (ISO)
Nutlin-3  (ISO)
paracetamol  (EXP)
phenobarbital  (EXP)
pirinixic acid  (EXP)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (EXP)
sodium fluoride  (EXP)
sulfadimethoxine  (ISO)
tebuconazole  (ISO)
testosterone  (ISO)
tetrachloroethene  (EXP)
tetrachloromethane  (EXP)
theophylline  (ISO)
thiram  (ISO)
titanium dioxide  (EXP,ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
trovafloxacin  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:15489334   PMID:15747579   PMID:16141072   PMID:16141073   PMID:17967808   PMID:21677750   PMID:21873635  
PMID:24194600   PMID:24872421   PMID:25066864   PMID:26370502   PMID:27626380   PMID:28378742   PMID:28728022   PMID:29855382   PMID:29929528   PMID:30013069   PMID:30418981   PMID:30496365  
PMID:32160553   PMID:32504082   PMID:32572497   PMID:32761777   PMID:32852886   PMID:32929860   PMID:32985120   PMID:33016371   PMID:33796852   PMID:34480901   PMID:35287730   PMID:36707901  
PMID:37146150   PMID:37421949   PMID:37443768   PMID:37519899   PMID:37901434   PMID:37965143   PMID:38355793   PMID:38526616   PMID:38526799   PMID:38674351   PMID:39237682  


Genomics

Comparative Map Data
Tmem106b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39613,069,758 - 13,089,268 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl613,069,758 - 13,089,268 (+)EnsemblGRCm39 Ensembl
GRCm38613,069,759 - 13,089,269 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl613,069,759 - 13,089,269 (+)EnsemblGRCm38mm10GRCm38
MGSCv37613,019,759 - 13,039,269 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36613,019,856 - 13,035,064 (+)NCBIMGSCv36mm8
Celera613,170,992 - 13,190,653 (+)NCBICelera
Cytogenetic Map6A1NCBI
cM Map65.38NCBI
TMEM106B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38712,211,294 - 12,243,367 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl712,211,270 - 12,243,367 (+)EnsemblGRCh38hg38GRCh38
GRCh37712,250,920 - 12,282,993 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36712,217,451 - 12,243,411 (+)NCBINCBI36Build 36hg18NCBI36
Celera712,228,868 - 12,254,926 (+)NCBICelera
Cytogenetic Map7p21.3NCBI
HuRef712,126,997 - 12,153,058 (+)NCBIHuRef
CHM1_1712,251,533 - 12,277,588 (+)NCBICHM1_1
T2T-CHM13v2.0712,342,181 - 12,373,955 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2712,304,117 - 12,330,178 (+)NCBI
Tmem106b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8442,294,074 - 42,313,426 (+)NCBIGRCr8
mRatBN7.2441,328,125 - 41,347,315 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl441,327,994 - 41,345,619 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx446,306,388 - 46,323,231 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0442,232,496 - 42,249,335 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0440,636,118 - 40,652,956 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0439,517,679 - 39,534,491 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl439,517,548 - 39,535,169 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0439,352,537 - 39,371,725 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4438,398,245 - 38,415,059 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1438,516,785 - 38,533,599 (-)NCBI
Celera436,699,886 - 36,716,700 (+)NCBICelera
Cytogenetic Map4q21NCBI
Tmem106b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543218,619,413 - 18,639,151 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543218,619,418 - 18,644,876 (+)NCBIChiLan1.0ChiLan1.0
TMEM106B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2617,079,998 - 17,105,965 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1765,404,706 - 65,430,681 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0712,905,192 - 12,931,170 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1712,249,919 - 12,275,969 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl712,250,010 - 12,270,693 (+)Ensemblpanpan1.1panPan2
TMEM106B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11427,140,692 - 27,166,652 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1427,140,687 - 27,161,333 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1426,648,942 - 26,678,555 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01426,963,081 - 26,992,754 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1426,966,915 - 26,992,676 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11427,133,462 - 27,163,103 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01426,864,035 - 26,893,704 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01427,115,901 - 27,145,547 (+)NCBIUU_Cfam_GSD_1.0
Tmem106b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511840,542,433 - 40,568,630 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367611,662,738 - 1,685,156 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367611,663,099 - 1,689,580 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM106B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl981,837,667 - 81,864,210 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1981,837,654 - 81,864,215 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2990,000,953 - 90,023,858 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM106B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12145,899,428 - 45,921,500 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2145,900,531 - 45,920,569 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604258,545,396 - 58,568,491 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem106b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248277,014,842 - 7,041,871 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248277,015,267 - 7,043,853 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tmem106b
1104 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1546
Count of miRNA genes:787
Interacting mature miRNAs:1013
Transcripts:ENSMUST00000031556, ENSMUST00000122916, ENSMUST00000124234, ENSMUST00000136742, ENSMUST00000142211, ENSMUST00000142798
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396633110Mouse
11353836Bmiq1_mbody mass index QTL 1 (mouse)6450382329751333Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080576983Mouse
1357520Axtq2_manxiety QTL 2 (mouse)Not determined6450382348703611Mouse
10043869Cia6a_mcollagen induced arthritis QTL 6a (mouse)Not determined61211797146118069Mouse
14746985Manh59_mmandible shape 59 (mouse)6120847193Mouse
4141749Obrq2_mobesity resistance QTL 2 (mouse)Not determined1275122146751333Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396633110Mouse
1301131Chol2_mcholesterol 2 (mouse)Not determined6132144495Mouse
1302024Skull7_mskull morphology 7 (mouse)Not determined6132144495Mouse
11353841Bmiq3_mbody mass index QTL 3 (mouse)6450382348703611Mouse
11353840Bmiq2_mbody mass index QTL 2 (mouse)6450382345291115Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487403016Mouse
12904934Edlmmq4_mextensor digitorum longus muscle mass QTL 4 (mouse)6125514064Mouse
5491191Mobq2_mmultigenic obesity QTL 2 (mouse)Not determined6132144495Mouse
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396633110Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396633110Mouse
1300731Smdq3_msegregation of mitochondrial DNA QTL 3 (mouse)Not determined6424920638249325Mouse
1301178Lith10_mlithogenic gene 10 (mouse)Not determined6121465015Mouse
15039372Nmrs22_mNAFLD-associated magnetic resonance shift 22 (mouse)6147633435476334Mouse
12904942Tammq3_mtibialis anterior muscle mass QTL 3 (mouse)6125514064Mouse
1357503Nhdlq5_mnon-HDL QTL 5 (mouse)Not determined6121465015Mouse
1302051Sluc7_msusceptibility to lung cancer 7 (mouse)Not determined6929707443297168Mouse
10043884Bhr8_mbronchial hyperresponsiveness 8 (mouse)Not determined6121465015Mouse
10044000Mobq9_mmultigenetic obesity QTL 9 (mouse)Not determined6121465015Mouse
1357481Aaj2_manxiety in A/J 2 (mouse)Not determined6450382348703611Mouse
1301998Bts2_mbladder tumor susceptibility 2 (mouse)Not determined61275122146751333Mouse
12904955Gmmq3_mgastrocnemius muscle mass QTL 3 (mouse)6125514064Mouse

Markers in Region
AI428776  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38613,088,791 - 13,089,036UniSTSGRCm38
MGSCv37613,038,791 - 13,039,036UniSTSGRCm37
Celera613,190,175 - 13,190,420UniSTS
Cytogenetic Map6A2UniSTS
AA987036  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38613,084,780 - 13,085,071UniSTSGRCm38
MGSCv37613,034,780 - 13,035,071UniSTSGRCm37
Celera613,186,164 - 13,186,455UniSTS
Cytogenetic Map6A2UniSTS
Whitehead/MRC_RH9637.68UniSTS
AI661344  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38613,087,031 - 13,087,129UniSTSGRCm38
MGSCv37613,037,031 - 13,037,129UniSTSGRCm37
Celera613,188,415 - 13,188,513UniSTS
Cytogenetic Map6A2UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000031556   ⟹   ENSMUSP00000031556
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl613,069,838 - 13,089,268 (+)Ensembl
GRCm38.p6 Ensembl613,069,839 - 13,089,269 (+)Ensembl
Ensembl Acc Id: ENSMUST00000122916   ⟹   ENSMUSP00000122107
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl613,070,250 - 13,081,651 (+)Ensembl
GRCm38.p6 Ensembl613,070,251 - 13,081,652 (+)Ensembl
Ensembl Acc Id: ENSMUST00000124234   ⟹   ENSMUSP00000123208
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl613,069,758 - 13,075,093 (+)Ensembl
GRCm38.p6 Ensembl613,069,759 - 13,075,094 (+)Ensembl
Ensembl Acc Id: ENSMUST00000136742
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl613,069,850 - 13,075,384 (+)Ensembl
GRCm38.p6 Ensembl613,069,851 - 13,075,385 (+)Ensembl
Ensembl Acc Id: ENSMUST00000142211   ⟹   ENSMUSP00000122392
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl613,069,815 - 13,071,952 (+)Ensembl
GRCm38.p6 Ensembl613,069,816 - 13,071,953 (+)Ensembl
Ensembl Acc Id: ENSMUST00000142798
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl613,069,853 - 13,076,369 (+)Ensembl
GRCm38.p6 Ensembl613,069,854 - 13,076,370 (+)Ensembl
RefSeq Acc Id: NM_027992   ⟹   NP_082268
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39613,069,758 - 13,089,268 (+)NCBI
GRCm38613,069,759 - 13,089,269 (+)NCBI
MGSCv37613,019,759 - 13,039,269 (+)RGD
Celera613,170,992 - 13,190,653 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006505169   ⟹   XP_006505232
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39613,069,770 - 13,089,268 (+)NCBI
GRCm38613,069,817 - 13,089,269 (+)NCBI
Sequence:
RefSeq Acc Id: NP_082268   ⟸   NM_027992
- UniProtKB: Q9D737 (UniProtKB/Swiss-Prot),   Q80X71 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006505232   ⟸   XM_006505169
- Peptide Label: isoform X1
- UniProtKB: Q9D737 (UniProtKB/Swiss-Prot),   Q80X71 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000123208   ⟸   ENSMUST00000124234
Ensembl Acc Id: ENSMUSP00000031556   ⟸   ENSMUST00000031556
Ensembl Acc Id: ENSMUSP00000122392   ⟸   ENSMUST00000142211
Ensembl Acc Id: ENSMUSP00000122107   ⟸   ENSMUST00000122916
Protein Domains
Transmembrane protein 106 C-terminal   Transmembrane protein 106 N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q80X71-F1-model_v2 AlphaFold Q80X71 1-275 view protein structure

Promoters
RGD ID:6840078
Promoter ID:MM_KWN:45186
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_027992,   OTTMUST00000058938,   OTTMUST00000058939,   OTTMUST00000058940,   OTTMUST00000058941,   OTTMUST00000058942
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36613,019,526 - 13,020,026 (+)MPROMDB
RGD ID:6889018
Promoter ID:EPDNEW_M7960
Type:initiation region
Name:Tmem106b_1
Description:Mus musculus transmembrane protein 106B , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38613,069,816 - 13,069,876EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1919150 AgrOrtholog
Ensembl Genes ENSMUSG00000029571 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000031556 ENTREZGENE
  ENSMUST00000031556.14 UniProtKB/Swiss-Prot
  ENSMUST00000122916.2 UniProtKB/TrEMBL
  ENSMUST00000124234.8 UniProtKB/TrEMBL
  ENSMUST00000142211.8 UniProtKB/TrEMBL
InterPro DUF1356_TMEM106 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TMEM106_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TMEM106_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:71900 UniProtKB/Swiss-Prot
MGD MGI:1919150 ENTREZGENE
NCBI Gene 71900 ENTREZGENE
PANTHER PTHR28556 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 106B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF1356 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TMEM106_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tmem106b PhenoGen
Superfamily-SCOP LEA14-like UniProtKB/Swiss-Prot
UniProt D3Z0M2_MOUSE UniProtKB/TrEMBL
  D3Z191_MOUSE UniProtKB/TrEMBL
  D3Z6E0_MOUSE UniProtKB/TrEMBL
  Q80X71 ENTREZGENE
  Q9D3D8_MOUSE UniProtKB/TrEMBL
  Q9D737 ENTREZGENE
  T106B_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q9D737 UniProtKB/Swiss-Prot