Tmem106b (transmembrane protein 106B) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References FTP Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner
Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Tmem106b (transmembrane protein 106B) Chinchilla lanigera
Analyze
Symbol: Tmem106b
Name: transmembrane protein 106B
RGD ID: 8733451
Description: ENCODES a protein that exhibits ATPase binding (ortholog); INVOLVED IN dendrite morphogenesis (ortholog); lysosomal lumen acidification (ortholog); lysosomal protein catabolic process (ortholog); ASSOCIATED WITH Frontotemporal Lobar Degeneration (ortholog); Hypomyelinating Leukodystrophy 16 (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN endosome (ortholog); lysosomal membrane (ortholog); lysosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543218,619,413 - 18,639,151 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543218,619,418 - 18,644,876 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References


Genomics

Comparative Map Data
Tmem106b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543218,619,413 - 18,639,151 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543218,619,418 - 18,644,876 (+)NCBIChiLan1.0ChiLan1.0
TMEM106B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl712,211,270 - 12,243,367 (+)EnsemblGRCh38hg38GRCh38
GRCh38712,211,294 - 12,243,367 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37712,250,920 - 12,282,993 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh37712,250,848 - 12,276,890 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36712,217,451 - 12,243,411 (+)NCBINCBI36hg18NCBI36
Celera712,228,868 - 12,254,926 (+)NCBI
Cytogenetic Map7p21.3NCBI
HuRef712,126,997 - 12,153,058 (+)NCBIHuRef
CHM1_1712,251,533 - 12,277,588 (+)NCBICHM1_1
CRA_TCAGchr7v2712,304,117 - 12,330,178 (+)NCBI
Tmem106b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39613,069,758 - 13,089,268 (+)NCBIGRCm39mm39
GRCm38613,069,759 - 13,089,269 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl613,069,759 - 13,089,269 (+)EnsemblGRCm38mm10GRCm38
MGSCv37613,019,759 - 13,039,269 (+)NCBIGRCm37mm9NCBIm37
MGSCv36613,019,856 - 13,035,064 (+)NCBImm8
Celera613,170,992 - 13,190,653 (+)NCBICelera
Cytogenetic Map6A1NCBI
Tmem106b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2441,328,125 - 41,347,315 (+)NCBI
Rnor_6.0 Ensembl439,517,548 - 39,535,169 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0439,517,679 - 39,534,491 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0439,352,537 - 39,371,725 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4438,398,245 - 38,415,059 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1438,516,785 - 38,533,599 (-)NCBI
Celera436,699,886 - 36,716,700 (+)NCBICelera
Cytogenetic Map4q21NCBI
TMEM106B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1712,249,919 - 12,275,969 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl712,250,010 - 12,270,693 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0712,905,192 - 12,931,170 (+)NCBIMhudiblu_PPA_v0panPan3
TMEM106B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1427,140,687 - 27,161,333 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11427,140,692 - 27,166,652 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Tmem106b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049367611,663,099 - 1,689,580 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM106B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl981,837,688 - 81,864,193 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1981,837,654 - 81,864,215 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2990,000,953 - 90,023,858 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM106B
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12145,899,428 - 45,921,500 (-)NCBI
ChlSab1.1 Ensembl2145,900,531 - 45,920,569 (-)Ensembl
Tmem106b
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248277,015,267 - 7,043,853 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000005394   ⟹   ENSCLAP00000005298
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543218,619,413 - 18,639,151 (+)Ensembl
RefSeq Acc Id: XM_005388105   ⟹   XP_005388162
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543218,619,418 - 18,644,876 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005388162 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005388162   ⟸   XM_005388105
- Sequence:
RefSeq Acc Id: ENSCLAP00000005298   ⟸   ENSCLAT00000005394


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000003761 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000005298 ENTREZGENE
Ensembl Transcript ENSCLAT00000005394 ENTREZGENE
NCBI Gene Tmem106b ENTREZGENE