LIPG (lipase G, endothelial type) - Rat Genome Database

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Gene: LIPG (lipase G, endothelial type) Sus scrofa
Analyze
Symbol: LIPG
Name: lipase G, endothelial type
RGD ID: 14287203
Description: ENCODES a protein that exhibits heparin binding (inferred); hydrolase activity (inferred); lipoprotein lipase activity (inferred); INVOLVED IN regulation of lipoprotein metabolic process (ortholog); response to nutrient (ortholog); ASSOCIATED WITH arteriosclerosis (ortholog); cardiovascular system disease (ortholog); cerebral infarction (ortholog); FOUND IN extracellular space (ortholog); INTERACTS WITH (24S)-24-hydroxycholesterol; bezafibrate; deoxynivalenol
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: EL; endothelial lipase; lipase, endothelial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl199,081,938 - 99,110,874 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1199,081,940 - 99,110,671 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21108,638,415 - 108,667,182 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:15953354   PMID:17145712   PMID:22301074  


Genomics

Comparative Map Data
LIPG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl199,081,938 - 99,110,874 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1199,081,940 - 99,110,671 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21108,638,415 - 108,667,182 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LIPG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381849,561,479 - 49,599,185 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1849,560,699 - 49,599,185 (+)EnsemblGRCh38hg38GRCh38
GRCh371847,088,427 - 47,125,555 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361845,342,425 - 45,373,276 (+)NCBINCBI36Build 36hg18NCBI36
Build 341845,342,424 - 45,373,062NCBI
Celera1843,943,480 - 43,974,820 (+)NCBICelera
Cytogenetic Map18q21.1NCBI
HuRef1843,942,649 - 43,973,220 (+)NCBIHuRef
CHM1_11847,083,758 - 47,114,772 (+)NCBICHM1_1
T2T-CHM13v2.01849,759,293 - 49,797,014 (+)NCBIT2T-CHM13v2.0
Lipg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391875,072,393 - 75,095,380 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1875,072,393 - 75,094,334 (-)EnsemblGRCm39 Ensembl
GRCm381874,939,322 - 74,961,263 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1874,939,322 - 74,961,263 (-)EnsemblGRCm38mm10GRCm38
MGSCv371875,098,976 - 75,120,917 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361875,064,728 - 75,086,471 (-)NCBIMGSCv36mm8
Celera1876,168,769 - 76,190,731 (-)NCBICelera
Cytogenetic Map18E2NCBI
cM Map1850.94NCBI
Lipg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81870,790,077 - 70,811,259 (-)NCBIGRCr8
mRatBN7.21868,514,923 - 68,536,105 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1868,514,923 - 68,536,260 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1870,627,517 - 70,648,729 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01871,296,048 - 71,317,297 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01869,153,529 - 69,174,741 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01870,903,528 - 70,924,434 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1870,901,710 - 70,924,708 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01870,043,855 - 70,064,759 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41871,795,150 - 71,816,056 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11871,868,350 - 71,889,257 (-)NCBI
Celera1866,690,471 - 66,711,384 (-)NCBICelera
Cytogenetic Map18q12.2NCBI
Lipg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540234,667,036 - 34,687,568 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540234,666,757 - 34,689,726 (+)NCBIChiLan1.0ChiLan1.0
LIPG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21767,088,437 - 67,118,414 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11852,781,037 - 52,811,017 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01842,942,132 - 42,972,112 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11846,291,051 - 46,320,652 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1846,292,154 - 46,320,652 (+)Ensemblpanpan1.1panPan2
LIPG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1779,201,514 - 79,221,090 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl779,201,496 - 79,222,552 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha778,609,001 - 78,628,250 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0779,270,275 - 79,289,621 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl779,269,933 - 79,289,565 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1778,985,951 - 79,005,300 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0779,014,058 - 79,033,404 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0779,300,625 - 79,319,973 (-)NCBIUU_Cfam_GSD_1.0
Lipg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494438,167,652 - 38,190,835 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649713,406,357 - 13,429,890 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649713,406,402 - 13,429,833 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LIPG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11831,368,189 - 31,395,103 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1831,368,857 - 31,394,278 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660505,524,070 - 5,624,780 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lipg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477813,107,283 - 13,133,270 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477813,107,037 - 13,133,162 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in LIPG
791 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 10 3 5 2 1 2 2 3
Below cutoff 12

Sequence


RefSeq Acc Id: ENSSSCT00000023900   ⟹   ENSSSCP00000027699
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl199,081,938 - 99,110,874 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000029856   ⟹   ENSSSCP00000023372
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl199,081,938 - 99,110,874 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000031390   ⟹   ENSSSCP00000022566
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl199,081,938 - 99,099,041 (+)Ensembl
RefSeq Acc Id: NM_001243029   ⟹   NP_001229958
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1199,081,940 - 99,110,671 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013992843   ⟹   XP_013848297
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1199,081,942 - 99,109,360 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021094488   ⟹   XP_020950147
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1199,082,417 - 99,109,360 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001229958   ⟸   NM_001243029
- Peptide Label: precursor
- UniProtKB: I3LUA0 (UniProtKB/TrEMBL),   A0A8D1TX77 (UniProtKB/TrEMBL),   A0A8D0NSG8 (UniProtKB/TrEMBL),   A0A8D0XL95 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013848297   ⟸   XM_013992843
- Peptide Label: isoform X1
- UniProtKB: A0A8D1D0H0 (UniProtKB/TrEMBL),   A0A8D0XSP4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020950147   ⟸   XM_021094488
- Peptide Label: isoform X2
- UniProtKB: A0A8D1EKL5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000023372   ⟸   ENSSSCT00000029856
RefSeq Acc Id: ENSSSCP00000022566   ⟸   ENSSSCT00000031390
RefSeq Acc Id: ENSSSCP00000027699   ⟸   ENSSSCT00000023900
Protein Domains
Lipase   PLAT


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000004509 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015043688 UniProtKB/TrEMBL
  ENSSSCG00025045852 UniProtKB/TrEMBL
  ENSSSCG00030061062 UniProtKB/TrEMBL
  ENSSSCG00035062281 UniProtKB/TrEMBL
  ENSSSCG00040039575 UniProtKB/TrEMBL
  ENSSSCG00045015051 UniProtKB/TrEMBL
  ENSSSCG00050005349 UniProtKB/TrEMBL
  ENSSSCG00055007085 UniProtKB/TrEMBL
  ENSSSCG00060070451 UniProtKB/TrEMBL
  ENSSSCG00065011644 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000023900 ENTREZGENE
  ENSSSCT00000023900.3 UniProtKB/TrEMBL
  ENSSSCT00000029856.4 UniProtKB/TrEMBL
  ENSSSCT00000031390.4 UniProtKB/TrEMBL
  ENSSSCT00015058327.1 UniProtKB/TrEMBL
  ENSSSCT00015058396.1 UniProtKB/TrEMBL
  ENSSSCT00025062327.1 UniProtKB/TrEMBL
  ENSSSCT00025062446.1 UniProtKB/TrEMBL
  ENSSSCT00025062602.1 UniProtKB/TrEMBL
  ENSSSCT00025062749.1 UniProtKB/TrEMBL
  ENSSSCT00025062912.1 UniProtKB/TrEMBL
  ENSSSCT00030085347.1 UniProtKB/TrEMBL
  ENSSSCT00030085393.1 UniProtKB/TrEMBL
  ENSSSCT00030085446.1 UniProtKB/TrEMBL
  ENSSSCT00030085460.1 UniProtKB/TrEMBL
  ENSSSCT00030085503.1 UniProtKB/TrEMBL
  ENSSSCT00035083725.1 UniProtKB/TrEMBL
  ENSSSCT00035083729.1 UniProtKB/TrEMBL
  ENSSSCT00035083743.1 UniProtKB/TrEMBL
  ENSSSCT00035083764.1 UniProtKB/TrEMBL
  ENSSSCT00035083779.1 UniProtKB/TrEMBL
  ENSSSCT00040052981.1 UniProtKB/TrEMBL
  ENSSSCT00040053086.1 UniProtKB/TrEMBL
  ENSSSCT00040053331.1 UniProtKB/TrEMBL
  ENSSSCT00040053397.1 UniProtKB/TrEMBL
  ENSSSCT00040053521.1 UniProtKB/TrEMBL
  ENSSSCT00040053606.1 UniProtKB/TrEMBL
  ENSSSCT00045025600.1 UniProtKB/TrEMBL
  ENSSSCT00045025770.1 UniProtKB/TrEMBL
  ENSSSCT00045025839.1 UniProtKB/TrEMBL
  ENSSSCT00045025908.1 UniProtKB/TrEMBL
  ENSSSCT00050007297.1 UniProtKB/TrEMBL
  ENSSSCT00050007301.1 UniProtKB/TrEMBL
  ENSSSCT00050007305.1 UniProtKB/TrEMBL
  ENSSSCT00055013779.1 UniProtKB/TrEMBL
  ENSSSCT00055013841.1 UniProtKB/TrEMBL
  ENSSSCT00055013894.1 UniProtKB/TrEMBL
  ENSSSCT00055013972.1 UniProtKB/TrEMBL
  ENSSSCT00055014016.1 UniProtKB/TrEMBL
  ENSSSCT00060096163.1 UniProtKB/TrEMBL
  ENSSSCT00060096176.1 UniProtKB/TrEMBL
  ENSSSCT00060096197.1 UniProtKB/TrEMBL
  ENSSSCT00065015492.1 UniProtKB/TrEMBL
  ENSSSCT00065015497.1 UniProtKB/TrEMBL
  ENSSSCT00065015509.1 UniProtKB/TrEMBL
  ENSSSCT00065015519.1 UniProtKB/TrEMBL
  ENSSSCT00065015524.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1820 UniProtKB/TrEMBL
  PLAT/LH2 domain UniProtKB/TrEMBL
InterPro AB_hydrolase UniProtKB/TrEMBL
  Lipase/vitellogenin UniProtKB/TrEMBL
  Lipase_LIPH UniProtKB/TrEMBL
  Lipase_N UniProtKB/TrEMBL
  Lipo_Lipase UniProtKB/TrEMBL
  PLAT/LH2_dom UniProtKB/TrEMBL
  PLAT/LH2_dom_sf UniProtKB/TrEMBL
  TAG_lipase UniProtKB/TrEMBL
KEGG Report ssc:100155736 UniProtKB/TrEMBL
NCBI Gene LIPG ENTREZGENE
PANTHER ENDOTHELIAL LIPASE UniProtKB/TrEMBL
  PTHR11610 UniProtKB/TrEMBL
Pfam Lipase UniProtKB/TrEMBL
  PLAT UniProtKB/TrEMBL
PIRSF Lipoprotein_lipase_LIPH UniProtKB/TrEMBL
PRINTS LIPOLIPASE UniProtKB/TrEMBL
  TAGLIPASE UniProtKB/TrEMBL
PROSITE PLAT UniProtKB/TrEMBL
SMART LH2 UniProtKB/TrEMBL
Superfamily-SCOP SSF49723 UniProtKB/TrEMBL
  SSF53474 UniProtKB/TrEMBL
UniProt A0A8D0NSG8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0U476_PIG UniProtKB/TrEMBL
  A0A8D0XL95 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0XRI5_PIG UniProtKB/TrEMBL
  A0A8D0XSP4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0XTN9_PIG UniProtKB/TrEMBL
  A0A8D0XTT2_PIG UniProtKB/TrEMBL
  A0A8D1AI37_PIG UniProtKB/TrEMBL
  A0A8D1AR13_PIG UniProtKB/TrEMBL
  A0A8D1D0H0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1EGB9_PIG UniProtKB/TrEMBL
  A0A8D1EJ89_PIG UniProtKB/TrEMBL
  A0A8D1EJM6_PIG UniProtKB/TrEMBL
  A0A8D1EKL5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1HE47_PIG UniProtKB/TrEMBL
  A0A8D1HKC6_PIG UniProtKB/TrEMBL
  A0A8D1KAP1_PIG UniProtKB/TrEMBL
  A0A8D1KB23_PIG UniProtKB/TrEMBL
  A0A8D1LCA5_PIG UniProtKB/TrEMBL
  A0A8D1TX77 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1WMG1_PIG UniProtKB/TrEMBL
  A0A8D1XNR3_PIG UniProtKB/TrEMBL
  I3LES7_PIG UniProtKB/TrEMBL
  I3LH28_PIG UniProtKB/TrEMBL
  I3LUA0 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:89739 ENTREZGENE