Lipg (lipase G, endothelial type) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Lipg (lipase G, endothelial type) Heterocephalus glaber
Analyze
Symbol: Lipg
Name: lipase G, endothelial type
RGD ID: 18930009
Description: ENCODES a protein that exhibits 1-acyl-2-lysophosphatidylserine acylhydrolase activity (inferred); heparin binding (inferred); hydrolase activity (inferred); INVOLVED IN regulation of lipoprotein metabolic process (ortholog); response to nutrient (ortholog); ASSOCIATED WITH arteriosclerosis (ortholog); cardiovascular system disease (ortholog); cerebral infarction (ortholog); FOUND IN extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: endothelial lipase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477813,107,283 - 13,133,270 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477813,107,037 - 13,133,162 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Lipg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477813,107,283 - 13,133,270 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477813,107,037 - 13,133,162 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
LIPG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381849,561,479 - 49,599,185 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1849,560,699 - 49,599,185 (+)EnsemblGRCh38hg38GRCh38
GRCh371847,088,427 - 47,125,555 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361845,342,425 - 45,373,276 (+)NCBINCBI36Build 36hg18NCBI36
Build 341845,342,424 - 45,373,062NCBI
Celera1843,943,480 - 43,974,820 (+)NCBICelera
Cytogenetic Map18q21.1NCBI
HuRef1843,942,649 - 43,973,220 (+)NCBIHuRef
CHM1_11847,083,758 - 47,114,772 (+)NCBICHM1_1
T2T-CHM13v2.01849,759,293 - 49,797,014 (+)NCBIT2T-CHM13v2.0
Lipg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391875,072,393 - 75,095,380 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1875,072,393 - 75,094,334 (-)EnsemblGRCm39 Ensembl
GRCm381874,939,322 - 74,961,263 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1874,939,322 - 74,961,263 (-)EnsemblGRCm38mm10GRCm38
MGSCv371875,098,976 - 75,120,917 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361875,064,728 - 75,086,471 (-)NCBIMGSCv36mm8
Celera1876,168,769 - 76,190,731 (-)NCBICelera
Cytogenetic Map18E2NCBI
cM Map1850.94NCBI
Lipg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81870,790,077 - 70,811,259 (-)NCBIGRCr8
mRatBN7.21868,514,923 - 68,536,105 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1868,514,923 - 68,536,260 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1870,627,517 - 70,648,729 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01871,296,048 - 71,317,297 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01869,153,529 - 69,174,741 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01870,903,528 - 70,924,434 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1870,901,710 - 70,924,708 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01870,043,855 - 70,064,759 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41871,795,150 - 71,816,056 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11871,868,350 - 71,889,257 (-)NCBI
Celera1866,690,471 - 66,711,384 (-)NCBICelera
Cytogenetic Map18q12.2NCBI
Lipg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540234,667,036 - 34,687,568 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540234,666,757 - 34,689,726 (+)NCBIChiLan1.0ChiLan1.0
LIPG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21767,088,437 - 67,118,414 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11852,781,037 - 52,811,017 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01842,942,132 - 42,972,112 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11846,291,051 - 46,320,652 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1846,292,154 - 46,320,652 (+)Ensemblpanpan1.1panPan2
LIPG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1779,201,514 - 79,221,090 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl779,201,496 - 79,222,552 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha778,609,001 - 78,628,250 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0779,270,275 - 79,289,621 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl779,269,933 - 79,289,565 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1778,985,951 - 79,005,300 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0779,014,058 - 79,033,404 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0779,300,625 - 79,319,973 (-)NCBIUU_Cfam_GSD_1.0
Lipg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494438,167,652 - 38,190,835 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649713,406,357 - 13,429,890 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649713,406,402 - 13,429,833 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LIPG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl199,081,938 - 99,110,874 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1199,081,940 - 99,110,671 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21108,638,415 - 108,667,182 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LIPG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11831,368,189 - 31,395,103 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1831,368,857 - 31,394,278 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660505,524,070 - 5,624,780 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000014440   ⟹   ENSHGLP00000014296
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462477813,107,283 - 13,133,270 (+)Ensembl
RefSeq Acc Id: XM_004855128   ⟹   XP_004855185
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477813,107,037 - 13,133,162 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004855185 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000014296
  ENSHGLP00100021388
GenBank Protein JAO02163 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004855185   ⟸   XM_004855128
- UniProtKB: A0A0P6JXQ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000014296   ⟸   ENSHGLT00000014440


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000010224 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLG00100015748 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000014440 ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLT00100021614 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1820 UniProtKB/TrEMBL
  PLAT/LH2 domain UniProtKB/TrEMBL
InterPro AB_hydrolase UniProtKB/TrEMBL
  Lipase/vitellogenin UniProtKB/TrEMBL
  Lipase_LIPH UniProtKB/TrEMBL
  Lipase_N UniProtKB/TrEMBL
  Lipo_Lipase UniProtKB/TrEMBL
  PLAT/LH2_dom UniProtKB/TrEMBL
  PLAT/LH2_dom_sf UniProtKB/TrEMBL
  TAG_lipase UniProtKB/TrEMBL
NCBI Gene Lipg ENTREZGENE
PANTHER ENDOTHELIAL LIPASE UniProtKB/TrEMBL
  PTHR11610 UniProtKB/TrEMBL
Pfam Lipase UniProtKB/TrEMBL
  PLAT UniProtKB/TrEMBL
PIRSF Lipoprotein_lipase_LIPH UniProtKB/TrEMBL
PRINTS LIPOLIPASE UniProtKB/TrEMBL
  TAGLIPASE UniProtKB/TrEMBL
PROSITE PLAT UniProtKB/TrEMBL
SMART LH2 UniProtKB/TrEMBL
Superfamily-SCOP SSF49723 UniProtKB/TrEMBL
  SSF53474 UniProtKB/TrEMBL
UniProt A0A0P6JXQ5 ENTREZGENE, UniProtKB/TrEMBL