MAP1S (microtubule associated protein 1S)

Gene: MAP1S (microtubule associated protein 1S) Sus scrofa

Analyze

Symbol:

MAP1S

Name:

microtubule associated protein 1S

RGD ID:

14246397

Description:

ENCODES a protein that exhibits actin filament binding (ortholog); DNA nuclease activity (ortholog); identical protein binding (ortholog); INVOLVED IN brain development (ortholog); microtubule cytoskeleton organization (ortholog); nervous system development (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN microtubule cytoskeleton (ortholog); INTERACTS WITH deoxynivalenol; ethanol

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

microtubule-associated protein 1S

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	59,999,168 - 60,029,865 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	60,003,116 - 60,043,133 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	59,583,390 - 59,610,014 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

deoxynivalenol (EXP)

ethanol (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axonogenesis (IBA,IEA)

brain development (ISO)

dendrite development (IBA,IEA)

metaphase chromosome alignment (IEA)

microtubule anchoring at centrosome (IEA)

microtubule bundle formation (IEA)

microtubule cytoskeleton organization (IBA,IEA,ISO)

mitotic spindle organization (IEA)

nervous system development (ISO)

neuron projection morphogenesis (IEA)

regulation of microtubule depolymerization (IBA,IEA)

Cellular Component

cell junction (IEA)

cell projection (IEA)

centrosome (IEA)

cytosol (IBA,IEA)

dendrite (IBA,IEA)

microtubule (IBA,IEA)

microtubule associated complex (IBA,IEA)

microtubule cytoskeleton (ISO)

microtubule organizing center (IEA)

mitotic spindle microtubule (IEA)

neuronal cell body (IBA,IEA)

nucleolus (IEA)

nucleoplasm (IEA)

nucleus (IEA)

perinuclear region of cytoplasm (IEA)

spindle (IEA)

synapse (IBA,IEA)

Molecular Function

actin binding (IBA,IEA)

actin filament binding (IEA,ISO)

beta-tubulin binding (IEA)

DNA binding (IEA)

DNA nuclease activity (ISO)

identical protein binding (ISO)

microtubule binding (IBA,IEA)

protein binding (ISO)

tubulin binding (IEA)

References

Additional References at PubMed

PMID:14681463	PMID:30032202

Genomics

Comparative Map Data

MAP1S
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	59,999,168 - 60,029,865 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	60,003,116 - 60,043,133 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	59,583,390 - 59,610,014 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MAP1S
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	17,719,480 - 17,734,513 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	17,719,242 - 17,734,513 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	17,830,289 - 17,845,322 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	17,691,303 - 17,706,324 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	17,691,302 - 17,706,324	NCBI
Celera	19	17,731,926 - 17,747,113 (+)	NCBI		Celera
Cytogenetic Map	19	p13.11	NCBI
HuRef	19	17,396,489 - 17,410,239 (+)	NCBI		HuRef
CHM1_1	19	17,829,827 - 17,844,852 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	17,853,600 - 17,868,633 (+)	NCBI		T2T-CHM13v2.0

Map1s
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	71,358,618 - 71,370,173 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	71,358,576 - 71,370,173 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	70,905,974 - 70,917,529 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	70,905,932 - 70,917,529 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	73,429,873 - 73,441,428 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	73,834,976 - 73,846,514 (+)	NCBI		MGSCv36	mm8
Celera	8	73,467,068 - 73,478,623 (+)	NCBI		Celera
Cytogenetic Map	8	B3.3	NCBI
cM Map	8	34.41	NCBI

Map1s
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	18,551,573 - 18,561,760 (-)	NCBI		GRCr8
mRatBN7.2	16	18,516,759 - 18,527,777 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	18,517,574 - 18,527,988 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	18,559,786 - 18,569,981 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	19,692,464 - 19,702,659 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	18,612,725 - 18,622,920 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	20,268,663 - 20,278,850 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	20,267,581 - 20,278,814 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	20,126,207 - 20,136,394 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	19,017,018 - 19,027,148 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	19,017,014 - 19,027,144 (-)	NCBI
Celera	16	18,710,209 - 18,720,404 (-)	NCBI		Celera
Cytogenetic Map	16	p14	NCBI

MAP1S
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	22,584,448 - 22,599,684 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	21,591,597 - 21,606,728 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	17,201,883 - 17,217,116 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	18,165,267 - 18,192,959 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	18,178,445 - 18,192,873 (+)	Ensembl	panpan1.1		panPan2

MAP1S
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	45,147,720 - 45,162,431 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	45,147,751 - 45,162,408 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	45,059,838 - 45,074,516 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	45,633,065 - 45,647,732 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	45,633,064 - 45,647,741 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	44,869,181 - 44,883,893 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	45,279,496 - 45,294,177 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	45,555,242 - 45,569,965 (-)	NCBI		UU_Cfam_GSD_1.0

Map1s
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	203,736,892 - 203,747,728 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936596	3,286,119 - 3,296,852 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936596	3,286,031 - 3,296,855 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MAP1S
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	16,192,707 - 16,208,729 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	16,192,734 - 16,209,553 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666074	3,188,242 - 3,204,092 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Map1s
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624908	400,577 - 408,129 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624908	400,765 - 408,154 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in MAP1S
1369 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium
Low	9	4	3	5	2	23	2	3	3
Below cutoff	1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001243185	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021079065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK235554	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK391745	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BW981712	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU928970	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01068128	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000015170 ⟹ ENSSSCP00000014764

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	2	59,999,168 - 60,028,888 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000062576 ⟹ ENSSSCP00000035461

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	2	59,999,168 - 60,029,865 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000089011 ⟹ ENSSSCP00000067286

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	2	59,999,168 - 60,027,571 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000103283 ⟹ ENSSSCP00000080771

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	2	59,999,168 - 60,027,745 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000105515 ⟹ ENSSSCP00000075372

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	2	59,999,168 - 60,028,220 (-)	Ensembl

RefSeq Acc Id:

NM_001243185 ⟹ NP_001230114

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	2	60,003,116 - 60,028,880 (-)	NCBI

Sequence:

show sequence

GGGGCGGGCGCCGGGAGCGTCAGGGCGGCGCGAAGATGGCGGCGGCGGTGGCGAGGCCCGGGGC
GTCGGAGGCACCCAGCTCGCTGCTGCTGGTGGTGGGCGGCGAGTGCGGGTCCCCGGGGCTGCTA
GCCTATGTGCTGGAGGAGCTTGAACGAGGCATCCGGTCTTGGGACATTGACTCTGGCATCTGCA
GCCTCAATGAGCAGCTCAAGGTCTTCGTGTCCCGGCACTCGGCCACCTTCTCCAACATTGTGAA
AGGCCAGCGGAGCCTGCACCACCGTGGAGATACCCTGGAGACGCTGGTCCTTCTGAATCCATCA
GACAAATCCCTATGTGACGAGCTCCGGAATCTTCTTTTGGACCCTGCTTCTCACAAGCTGCTGG
TGCTGGCTGGGCCATGCCTGGAGGAGACAGGGGAACTGCTGCTACAGACGGGGGGCTTCTCACC
TCGCCACTTCCTCCAGGTCCTGGGGGACAAAGAGATCCGGGATCTCCTGGCCTCCACACCCCCA
CCTGTGGACCCGCCCAAGCTCACCATCACCTGTCCGACCTTCGGTGACTGGGCCCAGCTGGCAC
CTGAAGTGTCTGGCCTCCAGGGCGTGCTCCAGCTGCAGTTAAACCCTCCCGTGCACCTGCCGGC
TTCCGAAGGCCTGCGTGAGCTCCTGGAGTATGTGGCTGAGTCGCTGGAGCTGCCGTCCCCCTTT
GAGCTGCTCGAGCCTCCGGCCTCCGTGGGCTTCCTCCGGCTCGCCCGGCCCTGCTGCTACATCT
TCCCTGGTGGCCTCGGGGATGCTGCCTTCTTCGCTGTCAACGGCTTCACCGTGCTGGTCAACGG
GGGCTCTAACCCCAAGTCAAGCTTCTGGAAGCTGGTGCGGCACCTCGACCGGGTGGATGCCGTG
CTGGTGACCCACGCGGGCGCCGACAGCCTCCCTGGCCTCAACAGTCTGCTGCGGCGCAAGCTGG
CAGAGCGCGATGAGGCAGCTGCTGGCGGGGGCTCCGGGGACGACCGGCTGCGCAGGCTGATCTC
CCCCAACCTGGGGGTTGTGTTTCTCAATGCCCGGGCGGCCGCCTCGCGGCTGGTGCGTGGCGAG
GACGAGGCAGAGCTGGCCCTGAGTCTCCTGGCCCAGCTGGGGATCACACCCCTGCCCCTGCACC
GCGGGCCGCTGCCGGCCGAGCCCACAGTGCTCTTCCAGAAGATGGGTGTGGGCCGGCTGGACAT
GTACGTGTTGCACCCACCCTCGGCTGCTGCTGACCACACACTGGCCTCCGTGTGCGCCCTGCTG
GTGTGGCACCCAGCAGGCCCCGCTGAGAAGGTGGTACGAGTGCTGTTCCCTGGCTGCACGCCTC
CTGCTCGCCTCCTGGATGGCCTGGTCCGCCTGCAGCACTTGGGGTTCTTGCGGGAGCCTGTGGT
GACCCCCCAGGACCTGGCAGGGCCTCGGCGAGCTGAGAGCAAGGAAAGCGTCGGCTCCCGGGAC
AGCTTGAGGCGAGAGGGCCGGGCCACGGTGCCCTCCAGGCCTGCCCAGGAGCGCCCCGGGGTGA
CCCGAAAGGAGCCCCCGCGGGCCGAGGCCCCTCGCAGGGCTGAAAAAGAAGCCAGGCCCCCCCG
GGAGGTGAAGAAGGACCCCAAGCTGAGTGCCCCTCGGGCAAGGGAGCCAAGGGAGGTACGCCGG
ACGGCCTCCGCTGTGGTCAGCAGCAAGAAGGCGGGTGCCCAAGCTGCTCCCAAGCCCCGCAGAG
CACCCAACACACCACGCCCTGGTGTCCCACCGGCAGAGAATGGGCCCCGCAGCCCTCCCAGCTT
CCGATGTGGAGAGGCCAGCCCCCCCACAGAAGCCTGTGGCTCCCCAGCCCCTCAGCTCGTGGCC
ACCCCCAGCCAGGAGAGCAGCCTGGAGCTGGGGCTGAGCCCGGTTGGGGAGGATGGCGGCAGCT
TGGAGGAGAAGACACTGGAGCTGCTGCTGGCCACCAACACCCCCCAGCCGTGCTCGCCCTCTCC
TGCCGGAGCCCACCAGGGCCAAACTGAGAGCTGTGGGCCACTGTCACTGAGCCCACTGCGTGGT
GGAGAGGCAGGGCCAGATGCCTCCCCCACAGTGACCACGCCCTCATTACCCGCTGAGGTGGGCT
CCCCACACTCCACAGAGGTGGACGAGTCCCTTTCCGTCTCCTTTGAGCAGGTGCTCCCTCCACC
GCCTGCCACCTCGAGCGAAGCCGGGCTGAGCCTCCCACTCTGTGGCCCTCGGGTGCGGCGCTCA
GCCTCCCCGCATGATGTGGACCTGTGCCTGGTGTCACCATGTGAGTTTGAGCACCGCAAGGCCG
TGCCCATGGCACCGGCACCCGTATCTCCTGGCAGCTCCAATGACAGCAGCGCCCGGTCCCAAGA
ACGGGCAGGCGCTCCAGGGGCCGAGGAGACGCCACCCACATCCGTCAGTGAGTCCCTGCCCACC
CTCTCTGACTCGGACCCCCTGCCTGCTGGCCCCGGAACCGCGGACTCAGATGAGGACACAGAGG
GCTTTGGAGTCCCTCGCCGTGACCCACTACCTGATCCCCTCAAGATCCCCCCACCACTACCCGC
CCCACCCAGTATCTGCATGGTGGACCCTGAGATGCTGCCCCCGGAGCAGGCTCGGCTGAGAGAG
GGCCTCAGCCGTACCCGGAAGCCCCTCACTCGCCCCAGCCCCGGCACTGCCGCCCCCAAAGCCA
CTGCAGGGACTGCTGCCAAAACCAAGGGGCTGGCCAGTGGGGACCGGGCCAGTCGGCCACTCAG
CGCCCGGAGCGAGCCCAGTGACAAAGGAAGTCGGGCACCCCTGTCAAGGAAGCCCTCGGTCCCC
AAGATGACCACTCGAGGTTCATCTGGGTCAGCTGGTAGTCGGCCAGGAGGGTCAGCAGCCCCAC
CCGGCTCCCCTGTCTACCTCGACCTGGCCTACCTGCCCAGCGGGGGCAGTGCCCGCCTGGTGGA
CGAGGAGTTCTTCCGGCGGGTGCGAGCGCTCTGCTACGTCATCAGCGGCCAGGACCAGCACAAG
GAAGAGGGCATGCGGGCCGTCTTGGATGCGCTCCTGGCTGGCAAGCAGCAATGGGACCGGGACC
TCCAGGTGACACTGATCCCCACCTTTGATTCGGTGGCGATGCACGAGTGGTACGAGGAGACGCA
CGCCCGGCACCAGGCGCTGGGCATCACAGTGTTGGGCAGCAACAGCACCGTGTCCATGCAGGAC
GAGGCTTTCCCGGCCTGCAAGGTGGAGTTCTAGCCCCGCCCCCTCTGCCCAGCATCAGCCACTG
TCCTGAGATTCACCCATGTCTGAAATAAACCAGGTACTCCGCTCAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_021079065 ⟹ XP_020934724

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	2	60,003,116 - 60,043,133 (-)	NCBI

Sequence:

show sequence

TGACTCCTCTGAGCCCGCACCGGTGCTGAATAAACCTTGCTTTTCCATATCTCTGAGTGCTGTT
TGTCTCCTTCCATTGCCACAGTGTTTGCGGTTTCCGCAACATTTTGCTGCATTGGCCGGGAAGC
CGACAACCGAGCTGGCTTCTTGTGCCACCGTTGTGGGGGAACTGGGGGAGGCCACGGTCACCGG
CCCGGTGACAGGTGGATAGCGCACACCGGCCATTTTGCCGGATCCAGACCCTCACTCAGGCCGT
GCTGGCCTTGGCCCACACCGCTTCCCGAACGGACTCAGAAAGAGAGTGGAAACAGGTTCCTGGA
CAGGACATCGGACTGCTCCAGGAGTATGCCGTAGCCCAGCCCTGACTCCACAGCTTGGGGATAT
CTGTGGCCAGCTCTTCTTCCTACAGACTGGGTCTCCTGGAGGACAAGGAGGGAGACCTCTTGGG
GACACAGGAAAATTGTCAAGAAGTACAGACCCAAGAGAATTGAAAGTGATGCTCGAGAAACACT
TGTACCTGAATGTTTACAGCAGCACGATTCACACCAGCAAAGAGGTGGCAACAACCAAAACATC
TACCAACAGATGAATGGACCAATAAAACATGAAGGAATAAAGTGGTCACACATGATACAACATG
GATGCACCTTGAAAACATTTTGCTGAGTGAAGGAAGTCAGAGAGAATGGGCCATTGTTTGAAAT
GTCCAGAACAGACAAATCCACAAGGACAGAAAACAGGCATCCGGTCTTGGGACATTGACTCTGG
CATCTGCAGCCTCAATGAGCAGCTCAAGGTCTTCGTGTCCCGGCACTCGGCCACCTTCTCCAAC
ATTGTGAAAGGCCAGCGGAGCCTGCACCACCGTGGAGATACCCTGGAGACGCTGGTCCTTCTGA
ATCCATCAGACAAATCCCTATGTGACGAGCTCCGGAATCTTCTTTTGGACCCTGCTTCTCACAA
GCTGCTGGTGCTGGCTGGGCCATGCCTGGAGGAGACAGGGGAACTGCTGCTACAGACGGGGGGC
TTCTCACCTCGCCACTTCCTCCAGGTCCTGGGGGACAAAGAGATCCGGGATCTCCTGGCCTCCA
CACCCCCACCTGTGGACCCGCCCAAGCTCACCATCACCTGTCCGACCTTCGGTGACTGGGCCCA
GCTGGCACCTGAAGTGTCTGGCCTCCAGGGCGTGCTCCAGCTGCAGTTAAACCCTCCCGTGCAC
CTGCCGGCTTCCGAAGGCCTGCGTGAGTTCCTGGAGTATGTGGCTGAGTCGCTGGAGCTGCCGT
CCCCCTTTGAGCTGCTCGAGCCTCCGGCCTCCGTGGGCTTCCTCCGGCTCGCCCGGCCCTGCTG
CTACATCTTCCCTGGTGGCCTCGGGGATGCTGCCTTCTTCGCTGTCAACGGCTTCACCGTGCTG
GTCAACGGGGGCTCTAACCCCAAGTCAAGCTTCTGGAAGCTGGTGCGGCACCTCGACCGGGTGG
ATGCCGTGCTGGTGACCCACGCGGGCGCCGACAGCCTCCCTGGCCTCAACAGTCTGCTGCGGCG
CAAGCTGGCAGAGCGCGATGAGGCAGCTGCTGGCGGGGGCTCCGGGGACGACCGGCTGCGCAGG
CTGATCTCCCCCAACCTGGGGGTTGTGTTTCTCAATGCCCGGGCGGCCGCCTCGCGGCTGGTGC
GTGGCGAGGACGAGGCAGAGCTGGCCCTGAGTCTCCTGGCCCAGCTGGGGATCACACCCCTGCC
CCTGCACCGCGGGCCGCTGCCGGCCGAGCCCACAGTGCTCTTCCAGAAGATGGGTGTGGGCCGG
CTGGACATGTACGTGTTGCACCCACCCTCGGCTGCTGCTGACCACACACTGGCCTCCGTGTGCG
CCCTGCTGGTGTGGCACCCAGCAGGCCCCGCTGAGAAGGTGGTACGAGTGCTGTTCCCTGGCTG
CACGCCTCCTGCTCGCCTCCTGGATGGCCTGGTCCGCCTGCAGCACTTGGGGTTCTTGCGGGAG
CCTGTGGTGACCCCCCAGGACCTGGCAGGGCCTCGGCGAGCTGAGAGCAAGGAAAGCGTCGGCT
CCCGGGACAGCTTGAGGCGAGAGGGCCGGGCCACGGTGCCCTCCAGGCCTGCCCAGGAGCGCCC
CGGGGTGACCCGAAAGGAGCCCCCGCGGGCCGAGGCCCCTCGCAGGGCTGAAAAAGAAGCCAGG
CCCCCCCGGGAGGTGAAGAAGGACCCCAAGCTGAGTGCCCCTCGGGCAAGGGAGCCAAGGGAGG
TACGCCGGACGGCCTCCGCTGTGGTCAGCAGCAAGAAGGCGGGTGCCCAAGCTGCTCCCAAGCC
CCGCAGAGCACCCAACACACCACGCCCTGGTGTCCCACCGGCAGAGAATGGGCCCCGCAGCCCT
CCCAGCTTCCGATGTGGAGAGGCCAGCCCCCCCACAGAAGCCTGTGGCTCCCCAGCCCCTCAGC
TCGTGGCCACCCCCAGCCAGGAGAGCAGCCTGGAGCTGGGGCTGAGCCCGGTTGGGGAGGATGG
CGGCAGCTTGGAGGAGAAGACACTGGAGCTGCTGCTGGCCACCAACACCCCCCAGCCGTGCTCG
CCCTCTCCTGCCGGAGCCCACCAGGGCCAAACTGAGAGCTGTGGGCCACTGTCACTGAGCCCAC
TGCGTGGTGGAGAGGCAGGGCCAGATGCCTCCCCCACAGTGACCACGCCCTCATTACCCGCTGA
GGTGGGCTCCCCACACTCCACAGAGGTGGACGAGTCCCTTTCCGTCTCCTTTGAGCAGGTGCTC
CCTCCACCGCCTGCCACCTCGAGCGAAGCCGGGCTGAGCCTCCCACTCTGTGGCCCTCGGGTGC
GGCGCTCAGCCTCCCCGCATGATGTGGACCTGTGCCTGGTGTCACCATGTGAGTTTGAGCACCG
CAAGGCCGTGCCCATGGCACCGGCACCCGTATCTCCTGGCAGCTCCAATGACAGCAGCGCCCGG
TCCCAAGAACGGGCAGGCGCTCCAGGGGCCGAGGAGACGCCACCCACATCCGTCAGTGAGTCCC
TGCCCACCCTCTCTGACTCGGACCCCCTGCCTGCTGGCCCCGGAACCGCGGACTCAGATGAGGA
CACAGAGGGCTTTGGAGTCCCTCGCCGTGACCCACTACCTGATCCCCTCAAGATCCCCCCACCA
CTACCCACCCCACCCAGTATCTGCATGGTGGACCCTGAGATGCTGCCCCCGGAGCAGGCTCGGC
TGAGAGAGGGCCTCAGCCGTACCCGGAAGCCCCTCACTCGCCCCAGCCCCGGCACTGCCGCCCC
CAAAGCCACTGCAGGGACTGCTGCCAAAACCAAGGGGCTGGCCAGTGGGGACCGGGCCAGTCGG
CCACTCAGCGCCCGGAGCGAGCCCAGTGACAAAGGAAGTCGGGCACCCCTGTCAAGGAAGCCCT
CGGTCCCCAAGATGACCACTCGAGGTTCATCTGGGTCAGCTGGTAGTCGGCCAGGAGGGTCAGC
AGCCCCACCCGGCTCCCCTGTCTACCTCGACCTGGCCTACCTGCCCAGCGGGGGCAGTGCCCGC
CTGGTGGACGAGGAGTTCTTCCGGCGGGTGCGAGCGCTCTGCTACGTCATCAGCGGCCAGGACC
AGCACAAGGAAGAGGGCATGCGGGCCGTCTTGGATGCGCTCCTGGCTGGCAAGCAGCAATGGGA
CCGGGACCTCCAGGTGACACTGATCCCCACCTTTGATTCGGTGGCGATGCACGAGTGGTACGAG
GAGACGCACGCCCGGCACCAGGCGCTGGGCATCACAGTGTTGGGCAGCAACAGCACCGTGTCCA
TGCAGGACGAGGCTTTCCCGGCCTGCAAGGTGGAGTTCTAGCCCCGCCCCCTCTGCCCAGCATC
AGCCACTGTCCTGAGATTCACCCATGTCTGAAATAAACCAGGTACTCCGCTCA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001230114	(Get FASTA)	NCBI Sequence Viewer
	XP_020934724	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000014764
	ENSSSCP00000014764.2
	ENSSSCP00000035461.2
	ENSSSCP00000067286.2
	ENSSSCP00000075372.1
	ENSSSCP00000080771.1
	ENSSSCP00035012699.1
	ENSSSCP00035012710.1
	ENSSSCP00040026574.1
	ENSSSCP00040026605.1
	ENSSSCP00055043059.1
	ENSSSCP00055043150.1
	ENSSSCP00065003790.1
	ENSSSCP00065003793.1
	ENSSSCP00070026184.1
	ENSSSCP00070026196.1

RefSeq Acc Id:	XP_020934724 ⟸ XM_021079065
- Peptide Label:	isoform X1
- UniProtKB:	A0A286ZUZ5 (UniProtKB/TrEMBL), A0A8D1RUY6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGHCLKCPEQTNPQGQKTGIRSWDIDSGICSLNEQLKVFVSRHSATFSNIVKGQRSLHHRGDTL ETLVLLNPSDKSLCDELRNLLLDPASHKLLVLAGPCLEETGELLLQTGGFSPRHFLQVLGDKEI RDLLASTPPPVDPPKLTITCPTFGDWAQLAPEVSGLQGVLQLQLNPPVHLPASEGLREFLEYVA ESLELPSPFELLEPPASVGFLRLARPCCYIFPGGLGDAAFFAVNGFTVLVNGGSNPKSSFWKLV RHLDRVDAVLVTHAGADSLPGLNSLLRRKLAERDEAAAGGGSGDDRLRRLISPNLGVVFLNARA AASRLVRGEDEAELALSLLAQLGITPLPLHRGPLPAEPTVLFQKMGVGRLDMYVLHPPSAAADH TLASVCALLVWHPAGPAEKVVRVLFPGCTPPARLLDGLVRLQHLGFLREPVVTPQDLAGPRRAE SKESVGSRDSLRREGRATVPSRPAQERPGVTRKEPPRAEAPRRAEKEARPPREVKKDPKLSAPR AREPREVRRTASAVVSSKKAGAQAAPKPRRAPNTPRPGVPPAENGPRSPPSFRCGEASPPTEAC GSPAPQLVATPSQESSLELGLSPVGEDGGSLEEKTLELLLATNTPQPCSPSPAGAHQGQTESCG PLSLSPLRGGEAGPDASPTVTTPSLPAEVGSPHSTEVDESLSVSFEQVLPPPPATSSEAGLSLP LCGPRVRRSASPHDVDLCLVSPCEFEHRKAVPMAPAPVSPGSSNDSSARSQERAGAPGAEETPP TSVSESLPTLSDSDPLPAGPGTADSDEDTEGFGVPRRDPLPDPLKIPPPLPTPPSICMVDPEML PPEQARLREGLSRTRKPLTRPSPGTAAPKATAGTAAKTKGLASGDRASRPLSARSEPSDKGSRA PLSRKPSVPKMTTRGSSGSAGSRPGGSAAPPGSPVYLDLAYLPSGGSARLVDEEFFRRVRALCY VISGQDQHKEEGMRAVLDALLAGKQQWDRDLQVTLIPTFDSVAMHEWYEETHARHQALGITVLG SNSTVSMQDEAFPACKVEF hide sequence

RefSeq Acc Id:

NP_001230114 ⟸ NM_001243185

- UniProtKB:

A0A4X1UDP0 (UniProtKB/TrEMBL), F1S939 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAAAVARPGASEAPSSLLLVVGGECGSPGLLAYVLEELERGIRSWDIDSGICSLNEQLKVFVSR
HSATFSNIVKGQRSLHHRGDTLETLVLLNPSDKSLCDELRNLLLDPASHKLLVLAGPCLEETGE
LLLQTGGFSPRHFLQVLGDKEIRDLLASTPPPVDPPKLTITCPTFGDWAQLAPEVSGLQGVLQL
QLNPPVHLPASEGLRELLEYVAESLELPSPFELLEPPASVGFLRLARPCCYIFPGGLGDAAFFA
VNGFTVLVNGGSNPKSSFWKLVRHLDRVDAVLVTHAGADSLPGLNSLLRRKLAERDEAAAGGGS
GDDRLRRLISPNLGVVFLNARAAASRLVRGEDEAELALSLLAQLGITPLPLHRGPLPAEPTVLF
QKMGVGRLDMYVLHPPSAAADHTLASVCALLVWHPAGPAEKVVRVLFPGCTPPARLLDGLVRLQ
HLGFLREPVVTPQDLAGPRRAESKESVGSRDSLRREGRATVPSRPAQERPGVTRKEPPRAEAPR
RAEKEARPPREVKKDPKLSAPRAREPREVRRTASAVVSSKKAGAQAAPKPRRAPNTPRPGVPPA
ENGPRSPPSFRCGEASPPTEACGSPAPQLVATPSQESSLELGLSPVGEDGGSLEEKTLELLLAT
NTPQPCSPSPAGAHQGQTESCGPLSLSPLRGGEAGPDASPTVTTPSLPAEVGSPHSTEVDESLS
VSFEQVLPPPPATSSEAGLSLPLCGPRVRRSASPHDVDLCLVSPCEFEHRKAVPMAPAPVSPGS
SNDSSARSQERAGAPGAEETPPTSVSESLPTLSDSDPLPAGPGTADSDEDTEGFGVPRRDPLPD
PLKIPPPLPAPPSICMVDPEMLPPEQARLREGLSRTRKPLTRPSPGTAAPKATAGTAAKTKGLA
SGDRASRPLSARSEPSDKGSRAPLSRKPSVPKMTTRGSSGSAGSRPGGSAAPPGSPVYLDLAYL
PSGGSARLVDEEFFRRVRALCYVISGQDQHKEEGMRAVLDALLAGKQQWDRDLQVTLIPTFDSV
AMHEWYEETHARHQALGITVLGSNSTVSMQDEAFPACKVEF

hide sequence

RefSeq Acc Id:

ENSSSCP00000014764 ⟸ ENSSSCT00000015170

RefSeq Acc Id:

ENSSSCP00000067286 ⟸ ENSSSCT00000089011

RefSeq Acc Id:

ENSSSCP00000035461 ⟸ ENSSSCT00000062576

RefSeq Acc Id:

ENSSSCP00000075372 ⟸ ENSSSCT00000105515

RefSeq Acc Id:

ENSSSCP00000080771 ⟸ ENSSSCT00000103283

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000013884	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00035024508	UniProtKB/TrEMBL
	ENSSSCG00040046769	UniProtKB/TrEMBL
	ENSSSCG00055027277	UniProtKB/TrEMBL
	ENSSSCG00065006762	UniProtKB/TrEMBL
	ENSSSCG00070015992	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000015170	ENTREZGENE
	ENSSSCT00000015170.5	UniProtKB/TrEMBL
	ENSSSCT00000062576.3	UniProtKB/TrEMBL
	ENSSSCT00000089011.2	UniProtKB/TrEMBL
	ENSSSCT00000103283.1	UniProtKB/TrEMBL
	ENSSSCT00000105515.1	UniProtKB/TrEMBL
	ENSSSCT00035032257.1	UniProtKB/TrEMBL
	ENSSSCT00035032279.1	UniProtKB/TrEMBL
	ENSSSCT00040062992.1	UniProtKB/TrEMBL
	ENSSSCT00040063056.1	UniProtKB/TrEMBL
	ENSSSCT00055053960.1	UniProtKB/TrEMBL
	ENSSSCT00055054067.1	UniProtKB/TrEMBL
	ENSSSCT00065009075.1	UniProtKB/TrEMBL
	ENSSSCT00065009085.1	UniProtKB/TrEMBL
	ENSSSCT00070031414.1	UniProtKB/TrEMBL
	ENSSSCT00070031427.1	UniProtKB/TrEMBL
InterPro	MAP1	UniProtKB/TrEMBL
NCBI Gene	MAP1S	ENTREZGENE
PANTHER	PTHR13843	UniProtKB/TrEMBL
	PTHR13843:SF11	UniProtKB/TrEMBL
UniProt	A0A286ZUZ5	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1UB73_PIG	UniProtKB/TrEMBL
	A0A4X1UDP0	ENTREZGENE, UniProtKB/TrEMBL
	A0A5G2QT14_PIG	UniProtKB/TrEMBL
	A0A8D1RUY6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8W4FAQ4_PIG	UniProtKB/TrEMBL
	A0A8W4FMQ2_PIG	UniProtKB/TrEMBL
	F1S939	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:89980	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar